EWM24217.1, cds6403 (CDS) Nannochloropsis gaditana

Overview
NameEWM24217.1
Unique Namecds6403
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:476110..476180 +
Alignment locationCM002468.1:476524..476942 +
Alignment locationCM002468.1:477087..477484 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24217.1
ProductCyclophilin-like peptidyl-prolyl cis-trans isomerase domain protein
Orig transcript idgnl|cribi|Naga_100020g62.5350.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:476110..476180 +
CM002468.1supercontigCM002468.1:476524..476942 +
CM002468.1supercontigCM002468.1:477087..477484 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
GO:0006457protein folding
GO:0000413protein peptidyl-prolyl isomerization
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0005515protein binding
GO:0003755peptidyl-prolyl cis-trans isomerase activity
Vocabulary: INTERPRO
TermDefinition
IPR020892Cyclophilin-type_PPIase_CS
IPR024936Cyclophilin-type_PPIase
IPR029000Cyclophilin-like_dom
IPR001478PDZ
IPR002130Cyclophilin-type_PPIase_dom
Homology
BLAST of EWM24217.1 vs. NCBI_GenBank
Match: gi|585105608|gb|EWM24217.1| (Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain protein [Nannochloropsis gaditana])

HSP 1 Score: 608.216 bits (1567), Expect = 0.000e+0
Identity = 295/295 (100.00%), Postives = 295/295 (100.00%), Query Frame = 0
Query:    1 MWKQVLLFVTLFSQAAGFLPGHSRISVTRSSIRSRYARKALAMEFVDVMLQKPMGIVLEENDPKLQGVYVKSLSQGGAAAASGKIQAGDHLVSVQGEMVTGKDLDAVLSTVGNAPSESVQMRFYRGALGDLINPQVWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGEKGFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQLS 295
            MWKQVLLFVTLFSQAAGFLPGHSRISVTRSSIRSRYARKALAMEFVDVMLQKPMGIVLEENDPKLQGVYVKSLSQGGAAAASGKIQAGDHLVSVQGEMVTGKDLDAVLSTVGNAPSESVQMRFYRGALGDLINPQVWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGEKGFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQLS
Sbjct:    1 MWKQVLLFVTLFSQAAGFLPGHSRISVTRSSIRSRYARKALAMEFVDVMLQKPMGIVLEENDPKLQGVYVKSLSQGGAAAASGKIQAGDHLVSVQGEMVTGKDLDAVLSTVGNAPSESVQMRFYRGALGDLINPQVWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGEKGFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQLS 295          
BLAST of EWM24217.1 vs. NCBI_GenBank
Match: gi|551678347|ref|XP_005841926.1| (hypothetical protein GUITHDRAFT_83873, partial [Guillardia theta CCMP2712] >gi|428186095|gb|EKX54946.1| hypothetical protein GUITHDRAFT_83873, partial [Guillardia theta CCMP2712])

HSP 1 Score: 321.242 bits (822), Expect = 4.933e-106
Identity = 151/276 (54.71%), Postives = 194/276 (70.29%), Query Frame = 0
Query:   22 HSRISVTRSSIRSRYARKALAMEFVDVMLQKPMGIVLEENDPKLQGVYVKSLSQGGAAAAS-----GKIQAGDHLVSVQGEMVTGKDLDAVLSTVGNAPSESVQMRFYRGALGDLINPQVWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGEKGFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCG 292
              R +  R++  SR+       E   V ++KPMG+V EEND + +G+ VK + +  A  A+      KI   D+L+ V GE   GK  D   + +   P++ +++ F RG +  + NP+VWFDI+IGGE+AGRI   LRKD  PKT ENFR LC+GE+G+GYK   FHRVIPGFMCQGGDFT+GDG GG+SIYG  F DENF+L HD  GILSMANAGPNTNGSQFF+CTV TP+LDGKHVVFG+V +G++++K IEAVGS  GKT+  V+IADCG
Sbjct:   65 QKRKAKARAAFDSRF-------EAYTVTMKKPMGLVFEENDSQAKGILVKKIDKASADQANLFNLENKISIRDYLLRVNGESCLGKSFDEAFAMIAENPAQELELTFARGGVEAVYNPRVWFDIEIGGEKAGRIKIELRKDAAPKTVENFRKLCSGEEGYGYKGCTFHRVIPGFMCQGGDFTNGDGTGGRSIYGKTFADENFDLKHDKAGILSMANAGPNTNGSQFFICTVPTPFLDGKHVVFGEVEDGMEVVKAIEAVGSSSGKTAAKVVIADCG 333          
BLAST of EWM24217.1 vs. NCBI_GenBank
Match: gi|299471368|emb|CBN79323.1| (cyclophilin [Ectocarpus siliculosus])

HSP 1 Score: 303.523 bits (776), Expect = 3.602e-99
Identity = 147/253 (58.10%), Postives = 181/253 (71.54%), Query Frame = 0
Query:   44 EFVDVMLQKPMGIVLEENDPKLQGVYVKSLSQGGAAAASGKIQAGDHLVSVQGEMVTGKDLDAVLSTVGNAPSESVQMRFYRGALGDLINPQVWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGE--KGFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQL 294
            E ++V L+KPMG+VLEEN     G+ VK ++ GG+A   G ++ GD L+ VQGE V G D D  +  + +AP + V+++ +RG   DL NPQV+FDI+I GE  GRI  +LR DVVPKTAENFR LCTGE   G  +K + FHRVIPGFM QGGDF + DG GG SIYGAKF+DENF L H GPG+LSMANAGP TNGSQFF+C  +TPWLD KHVVFG+V +G   +K IE +GS  GK S  + I DCGQL
Sbjct:   84 EKLEVSLKKPMGLVLEENVGGFGGLRVKEVADGGSAQEDGTVRVGDQLLEVQGENVKGIDFDEGMKKLMDAPEDGVKLKLFRGLTADLYNPQVYFDIEINGEDKGRILMQLRSDVVPKTAENFRQLCTGEAPDGKSFKGTIFHRVIPGFMLQGGDFDNADGTGGSSIYGAKFEDENFNLKHTGPGVLSMANAGPGTNGSQFFICVAKTPWLDDKHVVFGEVVDGARTVKDIELLGSSGGKPSKKIKIVDCGQL 336          
BLAST of EWM24217.1 vs. NCBI_GenBank
Match: gi|289064183|gb|ADC80505.1| (peptidyl prolyl cis-trans isomerase A (II) [Conus novaehollandiae])

HSP 1 Score: 270.781 bits (691), Expect = 8.431e-89
Identity = 126/164 (76.83%), Postives = 142/164 (86.59%), Query Frame = 0
Query:  131 LINPQVWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGEKGFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQL 294
            + NPQV+FDI IGG+ AGRI   LR DVVPKTAENFRALCTGEKGFGYK S+FHRVIPGFMCQGGDFT+ +G GGKSIYG KF+DENF+L H  PGILSMANAGPNTNGSQFFLCTV+T WLDGKHVVFG V EG+D++K +E +GSQ G TS+ V+IADCGQL
Sbjct:    1 MANPQVFFDITIGGQPAGRIVMELRADVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGGDFTNHNGTGGKSIYGNKFEDENFKLKHTEPGILSMANAGPNTNGSQFFLCTVKTTWLDGKHVVFGSVVEGMDVVKAMEKLGSQSGATSLKVVIADCGQL 164          
BLAST of EWM24217.1 vs. NCBI_GenBank
Match: gi|224010722|ref|XP_002294318.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220969813|gb|EED88152.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 269.626 bits (688), Expect = 2.377e-88
Identity = 125/162 (77.16%), Postives = 138/162 (85.19%), Query Frame = 0
Query:  133 NPQVWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGEKGFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQL 294
            NPQV+FDI IGG+ AGR+   LR DVVPKTAENFRALCTGEKGFGY  S+FHRVIPGFMCQGGDFT+ +G GGKSIYG KF DENF+LTH GPGILSMANAGPNTNGSQFFLCT ET WLDGKH VFG+VT+G+D++K IE+VGS  G T  PVMIA  GQL
Sbjct:    2 NPQVYFDITIGGKPAGRVIMELRADVVPKTAENFRALCTGEKGFGYAGSSFHRVIPGFMCQGGDFTNHNGTGGKSIYGTKFPDENFKLTHTGPGILSMANAGPNTNGSQFFLCTAETGWLDGKHTVFGKVTQGMDVVKAIESVGSNSGATKAPVMIAASGQL 163          
BLAST of EWM24217.1 vs. NCBI_GenBank
Match: gi|303285834|ref|XP_003062207.1| (predicted protein [Micromonas pusilla CCMP1545] >gi|226456618|gb|EEH53919.1| predicted protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 269.24 bits (687), Expect = 3.897e-88
Identity = 124/165 (75.15%), Postives = 141/165 (85.45%), Query Frame = 0
Query:  131 LINPQVWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGEKGFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQLS 295
            + NP V+FD+ +GG  AGRI   LR DV PKTAENFRALCTGEKGFG+K S+FHRVIP FMCQGGDFT+ +G GGKSIYG KF DENF+L H GPG+LSMANAGPNTNGSQFFLCTV+T WLDGKHVVFG VT+G+D++K IEAVG+  GKT+ PVMIADCGQLS
Sbjct:    1 MANPVVFFDMTVGGAPAGRIEMTLRADVAPKTAENFRALCTGEKGFGFKASSFHRVIPDFMCQGGDFTNHNGTGGKSIYGEKFADENFQLKHTGPGVLSMANAGPNTNGSQFFLCTVQTAWLDGKHVVFGNVTKGMDVVKAIEAVGTSSGKTTKPVMIADCGQLS 165          
BLAST of EWM24217.1 vs. NCBI_GenBank
Match: gi|1146076000|gb|AQQ10877.1| (peptidyl prolyl cis trans isomerase A, partial [Conus miles])

HSP 1 Score: 267.314 bits (682), Expect = 1.939e-87
Identity = 124/164 (75.61%), Postives = 140/164 (85.37%), Query Frame = 0
Query:  131 LINPQVWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGEKGFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQL 294
            +  P+ +FDI IGG+ +GRI   LR DVVPKTAENFRALCTGEKGFGYK S+FHRVIP FMCQGGDFT+ +G GGKSIYG KF DENF+L H GPGILSMANAGPNTNGSQFFLCT +T WLDGKHVVFG V EG+D++KKIE+VGSQ GKT+  V+IADCGQL
Sbjct:    1 MSKPKCYFDIAIGGQNSGRIVMELRADVVPKTAENFRALCTGEKGFGYKGSSFHRVIPDFMCQGGDFTNHNGTGGKSIYGEKFADENFQLKHTGPGILSMANAGPNTNGSQFFLCTAKTQWLDGKHVVFGSVVEGMDLVKKIESVGSQSGKTTKKVVIADCGQL 164          
BLAST of EWM24217.1 vs. NCBI_GenBank
Match: gi|551611911|ref|XP_005787022.1| (peptidyl-prolyl cis-trans isomerase [Emiliania huxleyi CCMP1516] >gi|485640346|gb|EOD34593.1| peptidyl-prolyl cis-trans isomerase [Emiliania huxleyi CCMP1516])

HSP 1 Score: 266.929 bits (681), Expect = 2.781e-87
Identity = 125/160 (78.12%), Postives = 140/160 (87.50%), Query Frame = 0
Query:  136 VWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGEKGFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQLS 295
            V+FD+ IGG  AGRI   LR D+VPKTAENFRALCTGEKGFGYK SAFHRVI  FMCQGGDFT+G+G GGKSIYGAKF DENF+L H GPGILSMANAGP TNGSQFFLCTV+T WLDGKHVVFG VT+G++++K IEAVGSQ GKT+ PV+IADCGQ+S
Sbjct:    5 VYFDMTIGGAPAGRIEMTLRDDIVPKTAENFRALCTGEKGFGYKGSAFHRVITNFMCQGGDFTAGNGTGGKSIYGAKFADENFQLKHTGPGILSMANAGPGTNGSQFFLCTVKTDWLDGKHVVFGSVTKGMEVVKAIEAVGSQSGKTAKPVVIADCGQIS 164          
BLAST of EWM24217.1 vs. NCBI_GenBank
Match: gi|551573513|ref|XP_005772560.1| (hypothetical protein EMIHUDRAFT_369290 [Emiliania huxleyi CCMP1516] >gi|485624006|gb|EOD20131.1| hypothetical protein EMIHUDRAFT_369290 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 266.544 bits (680), Expect = 3.988e-87
Identity = 126/160 (78.75%), Postives = 140/160 (87.50%), Query Frame = 0
Query:  136 VWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGEKGFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQLS 295
            V+FD+ IGG  AGRI   LR DVVPKTAENFRALCTGEKGFGYK SAFHRVI  FMCQGGDFT+G+G GGKSIYGAKF DENF+L H GPGILSMANAGP TNGSQFFLCTV+T WLDGKHVVFG VT+G++++K IEAVGSQ GKT+ PV+IADCGQ+S
Sbjct:    5 VFFDMTIGGAPAGRIEMTLRDDVVPKTAENFRALCTGEKGFGYKGSAFHRVITNFMCQGGDFTAGNGTGGKSIYGAKFADENFQLKHTGPGILSMANAGPGTNGSQFFLCTVKTDWLDGKHVVFGSVTKGMEVVKAIEAVGSQSGKTAKPVVIADCGQIS 164          
BLAST of EWM24217.1 vs. NCBI_GenBank
Match: gi|557133082|gb|AGZ87977.1| (peptidyl-prolyl cis-trans isomerase A [Conus textile])

HSP 1 Score: 266.544 bits (680), Expect = 4.305e-87
Identity = 125/164 (76.22%), Postives = 138/164 (84.15%), Query Frame = 0
Query:  131 LINPQVWFDIDIGGERAGRITCRLRKDVVPKTAENFRALCTGEKGFGYKNSAFHRVIPGFMCQGGDFTSGDGRGGKSIYGAKFDDENFELTHDGPGILSMANAGPNTNGSQFFLCTVETPWLDGKHVVFGQVTEGLDILKKIEAVGSQVGKTSVPVMIADCGQL 294
            + NP+V+FD+ IGG  AGRI   LR DV PKTAENFRALCTGEKGFGYK S+FHRVIP FMCQGGDFT+ +G GGKSIYG KF+DENF L H GPGILSMANAGP TNGSQFFLCT ET WLDGKHVVFG V EG+D+++KIEA GSQ GKTS  V+IADCGQL
Sbjct:    1 MSNPRVFFDMTIGGSPAGRIVMELRADVAPKTAENFRALCTGEKGFGYKGSSFHRVIPQFMCQGGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGILSMANAGPGTNGSQFFLCTAETAWLDGKHVVFGTVVEGMDVVQKIEAKGSQSGKTSAKVVIADCGQL 164          
The following BLAST results are available for this feature:
BLAST of EWM24217.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105608|gb|EWM24217.1|0.000e+0100.00Cyclophilin-like peptidyl-prolyl cis-trans isomera... [more]
gi|551678347|ref|XP_005841926.1|4.933e-10654.71hypothetical protein GUITHDRAFT_83873, partial [Gu... [more]
gi|299471368|emb|CBN79323.1|3.602e-9958.10cyclophilin [Ectocarpus siliculosus][more]
gi|289064183|gb|ADC80505.1|8.431e-8976.83peptidyl prolyl cis-trans isomerase A (II) [Conus ... [more]
gi|224010722|ref|XP_002294318.1|2.377e-8877.16predicted protein, partial [Thalassiosira pseudona... [more]
gi|303285834|ref|XP_003062207.1|3.897e-8875.15predicted protein [Micromonas pusilla CCMP1545] >g... [more]
gi|1146076000|gb|AQQ10877.1|1.939e-8775.61peptidyl prolyl cis trans isomerase A, partial [Co... [more]
gi|551611911|ref|XP_005787022.1|2.781e-8778.13peptidyl-prolyl cis-trans isomerase [Emiliania hux... [more]
gi|551573513|ref|XP_005772560.1|3.988e-8778.75hypothetical protein EMIHUDRAFT_369290 [Emiliania ... [more]
gi|557133082|gb|AGZ87977.1|4.305e-8776.22peptidyl-prolyl cis-trans isomerase A [Conus texti... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6419rna6419Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications