rna6417, rna6417 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6417
Unique Name	rna6417
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1677
Alignment location	CM002468.1:470943..473231 -

Link to JBrowse

Properties


Property Name	Value
Product	urease accessory protein ureg
Orig transcript id	gnl\|cribi\|Naga_100020g64.5369.mrna
Orig protein id	gnl\|cribi\|Naga_100020g64.5369
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:470943..473231 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g64	gene6200	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6417	rna6417-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24236.1	cds6401	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:470943..473231-
coding sequence from alignment at CM002468.1:470943..473231-

mRNA sequence

>rna6417 ID=rna6417|Name=rna6417|organism=Nannochloropsis gaditana|type=mRNA|length=1677bp
CGCAAACTGGCCAAGACTTAAGCCGTCTTCAGCTTACTTCTCCTTTCTCC
TCAACTCCCCATGTTTGAAGGAAGTTTACACACCAGGGCAGGACCTGTGT
AAAAATGAGCTCCACGCCTCATTCGAAGCACGTCAGTACCGAGGGCAGGG
AGAAGGTCTCGACCGCGCGACATCCTGAAAAGGACAACGGGCACCACCAT
CAGCATGAGCACCACCACTCCACCTCCCGTGGCGATGAGCATTGCGACGC
GCACAATAAAGTTGTAGAAGACCAACGCAAGCATATCCACGATCATGATT
ACCACCATCACCATCATCACCATTACCATGACAACAGCATGAGCGCTCAG
CAAAAGGGCGATCATTTACCATCCAAGAGACATTCACACAATTATGATGA
GCACGGTCATACTCACGAGCCGATGGAGTCTCCCGGCGCTTTCCACACGC
GCGACCAGCCCTTGAAAAGGGATTATTTAGAGCGCGCTTTTACAGTAGGC
GTGGGTGGGCCGGTAGGATCTGGTAAGACAGCTTTATTGTATGCTCTCTG
CAAGGCACTTCGTCATGATTACAGCATCGCCGCGATAACCAATGACATCT
TCACGCAAGAGGACGGGGAGTTTCTTTTACGGCACTCAGCCCTCGAGCCT
GATCGTATCCTGGCAATTGAGACCGGTGGTTGCCCCCACGCGGCGATCCG
GGAGGATATTTCAGCGAACCTGGCCGGGTGCGAGGGTATGACCGGCAAGC
ACAACGCAGATATAATTCTCGTGGAATCAGGTGGCGACAACCTAGCCGCC
AACTTCAGCCGGGAACTCGCGGACTATATTATCTACGTCATAGATGTAGC
GGGTGGGGACAAGGTGCCCCGCAAAGGGGGACCGGGTATCACCCAGTCGG
ATCTCCTCGTCATTAATAAGACCGATCTGGCTGACTCGGTGGGTGCCGAT
TTGGAGCGCATGGCCCGTGAGGCGGCTGTGATGCGCGGGGACGGGCCTGT
TGTTATGGCTCAAGTGAAGTTTGACATTGGCGTTCAGGACATTATCGCGC
ACATCCTCAAGGCGTGGAAGTTAGCTACTGGAGTCATACGCCCCAAGAAA
ACATCAGGAATCAGGGACGTGGCGGAGAAAAGCTCCTGAGGTGCAAAAAG
CCATCTTGCTTGAGATGGAAGATCGGTCAAGATAAATGCATGCGAGTTCA
AGTTGTCTTTATCAGTCAACATGCTGATTCACAGAGAATGAGTCGGTTGA
AAGTAAGGCATCTGACTGGGATAGGTCGAATAAATTGGGGTAGTGCTTGT
TAGTACCGCGTCATGTCGCACGTAATGAGTGATATGGAGAGCTGAGTCCG
CGTGCGCTTAAACTCGGGGCGCGATCCAATTTGTTATCCTCTATCGGCGT
ATTTTCTATTGTAAATACTCTGCTAAAGATCAATCTGGGGTCGAGGGTAG
AATTTGGTGAGAGTCCTTTTGAAACACATCCGAGCAATCGCCTGGCCCCG
ACTATCCCTCTCACTGAGAAATGGACAAGGTTTCAGCTTTCTTATGCCGT
TGCTCGCAACGAAATGCACTATTATGCAGGAAAGGAAAGAAGGGCTCGAT
AACGAACAGGGCAAACTCTTATCAAGGAGCATTCGGGAGCGAGAAGTCAT
GGGAATGAACCAGAGCATTTTTTTTCA

protein sequence of rna6417

>rna6417-protein ID=rna6417-protein|Name=rna6417|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MLIFQGHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHH
YHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRD
YLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEF
LLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILV
ESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKT
DLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKL
ATGVIRPKKTSGIRDVAEKSS

mRNA from alignment at CM002468.1:470943..473231-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6417 ID=rna6417|Name=rna6417|organism=Nannochloropsis gaditana|type=mRNA|length=2289bp|location=Sequence derived from alignment at CM002468.1:470943..473231- (Nannochloropsis gaditana)
CGCAAACTGGCCAAGACTTAAGCCGTCTTCAGCTTACTTCTCCTTTCTCC
TCAACTCCCCATGTTTGAAGGAAGTTTACACACCAGGGCAGGACCTGTGT
AAAAATGAGCTCCACGCCTCATTCGAAGCACGTCAGTACCGAGGGCAGGG
AGAAGGTCTCGACCGCGCGACATCCTGAAAAGGACAACGGTATGCACATG
AGATACCACATTGCCCTTCCTGACATTAAGAGCTGCTTATGCATTGAAAA
CATACCATGCATATACGGTCAATCCATGGCATTTATGTCGCAAAACATGC
TTGCAGTCAGTAACACAGGGTATGCCAATAGCCCGTGAGAGGACCAATTC
CATCTGCGATGTACCATATTCCCTGTGATAAAATGCTAAAAATGTCCCAG
GAAACAGAAAGCTGTGGGGTGGGGTGCAAGAATGGTCAATTAAATGTGTG
AGCAAATGTCTAAAGCCAGAAAGGAAGACCGATGATGAGAGGATGATCAG
TCTCACGAGCATGCTGAGGGTCCCTTCACGAAGTCTCCAGATGCCCCGTT
CACTTTTCCCACCCTTTTCTCATGTTGATCTTTCAAGGGCACCACCATCA
GCATGAGCACCACCACTCCACCTCCCGTGGCGATGAGCATTGCGACGCGC
ACAATAAAGTTGTAGAAGACCAACGCAAGCATATCCACGATCATGATTAC
CACCATCACCATCATCACCATTACCATGACAACAGCATGAGCGCTCAGCA
AAAGGGCGATCATTTACCATCCAAGAGACATTCACACAATTATGATGAGC
ACGGTCATACTCACGAGCCGATGGAGTCTCCCGGCGCTTTCCACACGCGC
GACCAGCCCTTGAAAAGGGATTATTTAGAGCGCGCTTTTACAGTAGGCGT
GGGTGGGCCGGTAGGATCTGGTAAGACAGCTTTATTGTATGCTCTCTGCA
AGGCACTTCGTCATGATTACAGCATCGCCGCGGTAAGCAAGCGCGTGGGT
GGGGAAAATGCAAAATTCACATAGCGGCGGCAGGGAGGACCTCTACCTCT
AGGACCGTGTTGACAGACGTGAAGCTTGCCGAGGATCCGTCAAGAGGAAT
CATTTTCTTGCAATTTCTATAGACAAAGTGGTCGTCATATGTAAGCGAGA
TGCACCCAGCAAAGTTCTTAACCTTTGGGCCCCTTTCCTTGAACAGATAA
CCAATGACATCTTCACGCAAGAGGACGGGGAGTTTCTTTTACGGCACTCA
GCCCTCGAGCCTGATCGTATCCTGGCAATTGAGACCGGTGGTTGCCCCCA
CGCGGCGATCCGGGAGGATATTTCAGCGAACCTGGCCGGGTGCGAGGGTA
TGACCGGCAAGCACAACGCAGATATAATTCTCGTGGAATCAGGTGGCGAC
AACCTAGCCGCCAACTTCAGCCGGGAACTCGCGGACTATATTATCTACGT
CATAGATGTAGCGGGTGGGGACAAGGTGCCCCGCAAAGGGGGACCGGGTA
TCACCCAGTCGGATCTCCTCGTCATTAATAAGACCGATCTGGCTGACTCG
GTGGGTGCCGATTTGGAGCGCATGGCCCGTGAGGCGGCTGTGATGCGCGG
GGACGGGCCTGTTGTTATGGCTCAAGTGAAGTTTGACATTGGCGTTCAGG
ACATTATCGCGCACATCCTCAAGGCGTGGAAGTTAGCTACTGGAGTCATA
CGCCCCAAGAAAACATCAGGAATCAGGGACGTGGCGGAGAAAAGCTCCTG
AGGTGCAAAAAGCCATCTTGCTTGAGATGGAAGATCGGTCAAGATAAATG
CATGCGAGTTCAAGTTGTCTTTATCAGTCAACATGCTGATTCACAGAGAA
TGAGTCGGTTGAAAGTAAGGCATCTGACTGGGATAGGTCGAATAAATTGG
GGTAGTGCTTGTTAGTACCGCGTCATGTCGCACGTAATGAGTGATATGGA
GAGCTGAGTCCGCGTGCGCTTAAACTCGGGGCGCGATCCAATTTGTTATC
CTCTATCGGCGTATTTTCTATTGTAAATACTCTGCTAAAGATCAATCTGG
GGTCGAGGGTAGAATTTGGTGAGAGTCCTTTTGAAACACATCCGAGCAAT
CGCCTGGCCCCGACTATCCCTCTCACTGAGAAATGGACAAGGTTTCAGCT
TTCTTATGCCGTTGCTCGCAACGAAATGCACTATTATGCAGGAAAGGAAA
GAAGGGCTCGATAACGAACAGGGCAAACTCTTATCAAGGAGCATTCGGGA
GCGAGAAGTCATGGGAATGAACCAGAGCATTTTTTTTCA

Coding sequence (CDS) from alignment at CM002468.1:470943..473231-

>rna6417 ID=rna6417|Name=rna6417|organism=Nannochloropsis gaditana|type=CDS|length=1932bp|location=Sequence derived from alignment at CM002468.1:470943..473231- (Nannochloropsis gaditana)
ATAACCAATGACATCTTCACGCAAGAGGACGGGGAGTTTCTTTTACGGCA
CTCAGCCCTCGAGCCTGATCGTATCCTGGCAATTGAGACCGGTGGTTGCC
CCCACGCGGCGATCCGGGAGGATATTTCAGCGAACCTGGCCGGGTGCGAG
GGTATGACCGGCAAGCACAACGCAGATATAATTCTCGTGGAATCAGGTGG
CGACAACCTAGCCGCCAACTTCAGCCGGGAACTCGCGGACTATATTATCT
ACGTCATAGATGTAGCGGGTGGGGACAAGGTGCCCCGCAAAGGGGGACCG
GGTATCACCCAGTCGGATCTCCTCGTCATTAATAAGACCGATCTGGCTGA
CTCGGTGGGTGCCGATTTGGAGCGCATGGCCCGTGAGGCGGCTGTGATGC
GCGGGGACGGGCCTGTTGTTATGGCTCAAGTGAAGTTTGACATTGGCGTT
CAGGACATTATCGCGCACATCCTCAAGGCGTGGAAGTTAGCTACTGGAGT
CATACGCCCCAAGAAAACATCAGGAATCAGGGACGTGGCGGAGAAAAGCT
CCTGAATGTTGATCTTTCAAGGGCACCACCATCAGCATGAGCACCACCAC
TCCACCTCCCGTGGCGATGAGCATTGCGACGCGCACAATAAAGTTGTAGA
AGACCAACGCAAGCATATCCACGATCATGATTACCACCATCACCATCATC
ACCATTACCATGACAACAGCATGAGCGCTCAGCAAAAGGGCGATCATTTA
CCATCCAAGAGACATTCACACAATTATGATGAGCACGGTCATACTCACGA
GCCGATGGAGTCTCCCGGCGCTTTCCACACGCGCGACCAGCCCTTGAAAA
GGGATTATTTAGAGCGCGCTTTTACAGTAGGCGTGGGTGGGCCGGTAGGA
TCTGGTAAGACAGCTTTATTGTATGCTCTCTGCAAGGCACTTCGTCATGA
TTACAGCATCGCCGCGATAACCAATGACATCTTCACGCAAGAGGACGGGG
AGTTTCTTTTACGGCACTCAGCCCTCGAGCCTGATCGTATCCTGGCAATT
GAGACCGGTGGTTGCCCCCACGCGGCGATCCGGGAGGATATTTCAGCGAA
CCTGGCCGGGTGCGAGGGTATGACCGGCAAGCACAACGCAGATATAATTC
TCGTGGAATCAGGTGGCGACAACCTAGCCGCCAACTTCAGCCGGGAACTC
GCGGACTATATTATCTACGTCATAGATGTAGCGGGTGGGGACAAGGTGCC
CCGCAAAGGGGGACCGGGTATCACCCAGTCGGATCTCCTCGTCATTAATA
AGACCGATCTGGCTGACTCGGTGGGTGCCGATTTGGAGCGCATGGCCCGT
GAGGCGGCTGTGATGCGCGGGGACGGGCCTGTTGTTATGGCTCAAGTGAA
GTTTGACATTGGCGTTCAGGACATTATCGCGCACATCCTCAAGGCGTGGA
AGTTAGCTACTGGAGTCATACGCCCCAAGAAAACATCAGGAATCAGGGAC
GTGGCGGAGAAAAGCTCCTGAATGTTGATCTTTCAAGGGCACCACCATCA
GCATGAGCACCACCACTCCACCTCCCGTGGCGATGAGCATTGCGACGCGC
ACAATAAAGTTGTAGAAGACCAACGCAAGCATATCCACGATCATGATTAC
CACCATCACCATCATCACCATTACCATGACAACAGCATGAGCGCTCAGCA
AAAGGGCGATCATTTACCATCCAAGAGACATTCACACAATTATGATGAGC
ACGGTCATACTCACGAGCCGATGGAGTCTCCCGGCGCTTTCCACACGCGC
GACCAGCCCTTGAAAAGGGATTATTTAGAGCGCGCTTTTACAGTAGGCGT
GGGTGGGCCGGTAGGATCTGGTAAGACAGCTTTATTGTATGCTCTCTGCA
AGGCACTTCGTCATGATTACAGCATCGCCGCG

Synonyms

Publications