EWM24236.1, cds6401 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM24236.1
Unique Name	cds6401
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002468.1:472250..472660 -
Alignment location	CM002468.1:471481..472035 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM24236.1
Product	urease accessory protein ureg
Orig transcript id	gnl\|cribi\|Naga_100020g64.5369.mrna
Gbkey	CDS
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:472250..472660 -
CM002468.1	supercontig	CM002468.1:471481..472035 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity
GO:0005488	binding
GO:0003924	GTPase activity
GO:0016151	nickel cation binding

Vocabulary: **Biological Process**
Term	Definition
GO:0008152	metabolic process
GO:0006807	nitrogen compound metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR004400	UreG
IPR027417	P-loop_NTPase
IPR003495	CobW/HypB/UreG_dom

Homology

[Close]

BLAST of EWM24236.1 vs. NCBI_GenBank
Match: gi|585105627|gb|EWM24236.1| (urease accessory protein ureg [Nannochloropsis gaditana])

HSP 1 Score: 657.522 bits (1695), Expect = 0.000e+0
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0

Query:    1 MLIFQGHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTSGIRDVAEKSS 321
            MLIFQGHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTSGIRDVAEKSS
Sbjct:    1 MLIFQGHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTSGIRDVAEKSS 321

[Close]

BLAST of EWM24236.1 vs. NCBI_GenBank
Match: gi|585105626|gb|EWM24235.1| (urease accessory protein ureg [Nannochloropsis gaditana])

HSP 1 Score: 648.662 bits (1672), Expect = 0.000e+0
Identity = 316/317 (99.68%), Postives = 316/317 (99.68%), Query Frame = 0

Query:    5 QGHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTSGIRDVAEKSS 321
             GHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTSGIRDVAEKSS
Sbjct:   28 NGHHHQHEHHHSTSRGDEHCDAHNKVVEDQRKHIHDHDYHHHHHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLKRDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIRPKKTSGIRDVAEKSS 344

[Close]

BLAST of EWM24236.1 vs. NCBI_GenBank
Match: gi|953487802|emb|CEG48630.1| (urease accessory protein [Plasmopara halstedii])

HSP 1 Score: 336.265 bits (861), Expect = 1.428e-112
Identity = 166/254 (65.35%), Postives = 199/254 (78.35%), Query Frame = 0

Query:   47 HHHHYHDNSMSAQQKGDHLPSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 299
            +H H  D   +  +     P+    ++  EHGHTHE +E  G FH RD     RD+++RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+ED EFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +  ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINKTDLA  VGADL+ MAR+A +MRGDGP V +Q+  D GVQDII H++K WK
Sbjct:   20 NHSHIDDLIQNFTRSHGRAPTLDEENHLREHGHTHEHLEHAGIFHERDTAKSDRDWVQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDSEFLVRHDALPKERIRAIETGGCPHAAIREDISANLQACEDLTEEFHPQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKTDLAPHVGADLDVMARDAKLMRGDGPTVFSQINQDKGVQDIIEHMIKTWK 273

[Close]

BLAST of EWM24236.1 vs. NCBI_GenBank
Match: gi|568036057|gb|ETM33674.1| (urease accessory protein UreG [Phytophthora parasitica])

HSP 1 Score: 330.102 bits (845), Expect = 5.613e-110
Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 0

Query:   66 PSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 299
            P+        EHGHTHE ME  G FH RD     RD+ +RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+EDGEFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +A ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  VGADL+ M R+A +MRG+GP V +Q+    GVQDI+ H++  WK
Sbjct:   47 PTTDEEKQLREHGHTHEHMEHAGVFHERDAAKSGRDWTQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDGEFLVRHDALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVGADLDVMDRDAKLMRGEGPTVFSQINQGKGVQDIVDHVIGTWK 281

[Close]

BLAST of EWM24236.1 vs. NCBI_GenBank
Match: gi|568006192|gb|ETL80462.1| (urease accessory protein UreG [Phytophthora parasitica])

HSP 1 Score: 330.102 bits (845), Expect = 5.690e-110
Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 0

Query:   66 PSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 299
            P+        EHGHTHE ME  G FH RD     RD+ +RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+EDGEFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +A ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  VGADL+ M R+A +MRG+GP V +Q+    GVQDI+ H++  WK
Sbjct:   49 PTTDEEKQLREHGHTHEHMEHAGVFHERDAAKSGRDWTQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDGEFLVRHDALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVGADLDVMDRDAKLMRGEGPTVFSQINQGKGVQDIVDHVIGTWK 283

[Close]

BLAST of EWM24236.1 vs. NCBI_GenBank
Match: gi|567976698|gb|ETL27215.1| (urease accessory protein UreG [Phytophthora parasitica] >gi|570938040|gb|ETP03297.1| urease accessory protein UreG [Phytophthora parasitica CJ01A1])

HSP 1 Score: 329.717 bits (844), Expect = 9.995e-110
Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 0

Query:   66 PSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 299
            P+        EHGHTHE ME  G FH RD     RD+ +RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+EDGEFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +A ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  VGADL+ M R+A +MRG+GP V +Q+    GVQDI+ H++  WK
Sbjct:   54 PTTDEEKQLREHGHTHEHMEHAGVFHERDAAKSGRDWTQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDGEFLVRHDALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVGADLDVMDRDAKLMRGEGPTVFSQINQGKGVQDIVDHVIGTWK 288

[Close]

BLAST of EWM24236.1 vs. NCBI_GenBank
Match: gi|970639311|gb|KUF82424.1| (Urease accessory protein UreG [Phytophthora nicotianae] >gi|970647570|gb|KUF87359.1| Integrator complex subunit 9 [Phytophthora nicotianae])

HSP 1 Score: 329.331 bits (843), Expect = 1.477e-109
Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 0

Query:   66 PSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 299
            P+        EHGHTHE ME  G FH RD     RD+ +RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+EDGEFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +A ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  VGADL+ M R+A +MRG+GP V +Q+    GVQDI+ H++  WK
Sbjct:   52 PTPDEEKQLREHGHTHEHMEHAGVFHERDAAKSGRDWTQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDGEFLVRHDALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVGADLDVMDRDAKLMRGEGPTVFSQINQGKGVQDIVDHVIGTWK 286

[Close]

BLAST of EWM24236.1 vs. NCBI_GenBank
Match: gi|570968337|gb|ETP31456.1| (urease accessory protein UreG [Phytophthora parasitica P10297])

HSP 1 Score: 328.946 bits (842), Expect = 1.790e-109
Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 0

Query:   66 PSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 299
            P+        EHGHTHE ME  G FH RD     RD+ +RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+EDGEFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +A ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  VGADL+ M R+A +MRG+GP V +Q+    GVQDI+ H++  WK
Sbjct:   49 PTPDEEKQLREHGHTHEHMEHAGVFHERDADKSGRDWTQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDGEFLVRHDALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVGADLDVMDRDAKLMRGEGPTVFSQINQGKGVQDIVDHVIGTWK 283

[Close]

BLAST of EWM24236.1 vs. NCBI_GenBank
Match: gi|566010543|gb|ETI33454.1| (urease accessory protein UreG [Phytophthora parasitica P1569])

HSP 1 Score: 329.717 bits (844), Expect = 2.140e-109
Identity = 160/235 (68.09%), Postives = 188/235 (80.00%), Query Frame = 0

Query:   66 PSKRHSHNYDEHGHTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWK 299
            P+        EHGHTHE ME  G FH RD     RD+ +RAFTVG+GGPVGSGKTAL+ ALC+AL+  +S+AA+TNDIFT+EDGEFL+RH AL  +RI AIETGGCPHAAIREDISANL  CE +T + +A ++LVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQ+DLLVINK DLA  VGADL+ M R+A +MRG+GP V +Q+    GVQDI+ H++  WK
Sbjct:   71 PTTDEEKQLREHGHTHEHMEHAGVFHERDAAKSGRDWTQRAFTVGIGGPVGSGKTALMLALCRALKDKFSLAAVTNDIFTREDGEFLVRHDALPEERIRAIETGGCPHAAIREDISANLQACEDLTDEFDAQLLLVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQADLLVINKIDLAPHVGADLDVMDRDAKLMRGEGPTVFSQINQGKGVQDIVDHVIGTWK 305

[Close]

BLAST of EWM24236.1 vs. NCBI_GenBank
Match: gi|470114702|ref|XP_004293549.1| (PREDICTED: urease accessory protein G [Fragaria vesca subsp. vesca])

HSP 1 Score: 326.635 bits (836), Expect = 1.121e-108
Identity = 158/229 (69.00%), Postives = 190/229 (82.97%), Query Frame = 0

Query:   79 HTHEPMESPGAFHTRDQPLK-RDYLERAFTVGVGGPVGSGKTALLYALCKALRHDYSIAAITNDIFTQEDGEFLLRHSALEPDRILAIETGGCPHAAIREDISANLAGCEGMTGKHNADIILVESGGDNLAANFSRELADYIIYVIDVAGGDKVPRKGGPGITQSDLLVINKTDLADSVGADLERMAREAAVMRGDGPVVMAQVKFDIGVQDIIAHILKAWKLATGVIR 306
            H+HEP+ SPG F  R  PL+ RD+ ERAFT+G+GGPVG+GKTAL+ ALCK LR  YS+AA+TNDIFT+EDGEFL++H AL  +RI A+ETGGCPHAAIREDIS NL   E ++  + ADI+L ESGGDNLAANFSRELADYIIY+IDV+GGDK+PRKGGPGITQ+DLLVINKTDLA++VGADL  M R+A  MR  GP V AQVK   GV++I+ HIL+AW+LATG+ R
Sbjct:   49 HSHEPIYSPGFFSRRAPPLQTRDFKERAFTIGIGGPVGTGKTALMLALCKLLRDKYSLAAVTNDIFTKEDGEFLVKHGALPEERIRAVETGGCPHAAIREDISINLGPLEELSNLYKADILLCESGGDNLAANFSRELADYIIYIIDVSGGDKIPRKGGPGITQADLLVINKTDLAEAVGADLAVMERDALRMRDGGPFVFAQVKHGKGVEEIVHHILQAWELATGMKR 277

The following BLAST results are available for this feature:

BLAST of EWM24236.1 vs. NCBI_GenBank

BLAST of EWM24236.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585105627\|gb\|EWM24236.1\|	0.000e+0	100.00	urease accessory protein ureg [Nannochloropsis gad...	[more]
gi\|585105626\|gb\|EWM24235.1\|	0.000e+0	99.68	urease accessory protein ureg [Nannochloropsis gad...	[more]
gi\|953487802\|emb\|CEG48630.1\|	1.428e-112	65.35	urease accessory protein [Plasmopara halstedii]	[more]
gi\|568036057\|gb\|ETM33674.1\|	5.613e-110	68.09	urease accessory protein UreG [Phytophthora parasi...	[more]
gi\|568006192\|gb\|ETL80462.1\|	5.690e-110	68.09	urease accessory protein UreG [Phytophthora parasi...	[more]
gi\|567976698\|gb\|ETL27215.1\|	9.995e-110	68.09	urease accessory protein UreG [Phytophthora parasi...	[more]
gi\|970639311\|gb\|KUF82424.1\|	1.477e-109	68.09	Urease accessory protein UreG [Phytophthora nicoti...	[more]
gi\|570968337\|gb\|ETP31456.1\|	1.790e-109	68.09	urease accessory protein UreG [Phytophthora parasi...	[more]
gi\|566010543\|gb\|ETI33454.1\|	2.140e-109	68.09	urease accessory protein UreG [Phytophthora parasi...	[more]
gi\|470114702\|ref\|XP_004293549.1\|	1.121e-108	69.00	PREDICTED: urease accessory protein G [Fragaria ve...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna6417	rna6417	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications