rna6412, rna6412 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6412
Unique Name	rna6412
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2180
Alignment location	CM002468.1:459745..461010 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100020g68.5373.mrna
Orig protein id	gnl\|cribi\|Naga_100020g68.5373
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:459745..461010 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g68	gene6196	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6412	rna6412-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24240.1	cds6396	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:459745..461010+
coding sequence from alignment at CM002468.1:459745..461010+

mRNA sequence

>rna6412 ID=rna6412|Name=rna6412|organism=Nannochloropsis gaditana|type=mRNA|length=2180bp
GCCCGTAGACACAGGGACAATGTACAGATCAAAAACATCCACCGCCCCAT
TTGCGACATTGTAAAACAAAAAAACAAGAATATTACCGACGGGAGCGGAC
AGTGGTGGCAGCTGTGTGCTCATGCGCCTTCTTTATCTTCATCCCTCGCT
GCATTTCCCCCGCCGCATGCGCCCCGCTGGGAGGGCTTGCTTCTTGACTG
CGTGTCCTTGCTCCCGTCTGGCTTTCCTTACCCTCAAAATGTATCACTTG
GATGTTTTGAGACTTTAGGCGGCTCTCTTAATATCGTCGCTGTATATAGT
CTTGTAGTGGCGGGGGAAGTGCTCCGACGACAAGCTCTCAGGCTAGGCTA
GTGACACAGACGCTGGATGTCTATAATGGCAACTCGGGTTTCGCAGAAAC
ATCCACGCCCAAAGCTTGCTCCTGTTCAAGCCGGGTGAAGTTTTTGATTC
GAGGCTTCCCACATTTTAGAAAATACGTTTCACACACAGGTTCACATGCG
GTGATTCAGCGGATGTCCAACAAGTACCTGTCTCGGGTGCGATGAGCAAC
TTGATTCCGCCACAAAGCTTTGTGTAGGCTCAAAGGTCCAGGACGCATCT
TCACCACTAGCTCTCCATTGCTCTCTACCTTATTGGGCCAGCGCTGCCTG
CTCTTCTTTGCATGAGCTCTGGTCGTGTCCGAGCTCCCTTCTCCTGTTTT
ACTACTTGCATGCTCACGCTGTTCTGCAGAACAGCAGGAGCTGCAGCCCA
CGTTTCTTTCCTGACATCGTCTCAAAGGCCGTTGTCGTCCTCCCATTGTA
ACAGTCGGATTTTGTGCGGCAGCAGCCGGATGCTCAACATGATGAAGGCC
GCTGCCGGGGACTCGTCCCAATTGAATCGATTTGTTGACGTGCATTGCCA
TATTATCCATGAGCAATTTGCTGGAGAAGAAGACGCCGTGGCTCAAAGAG
CGAAAGATAAGGGACTGGAGTACTGTGTGGTTAACGGATTGGAGCCGCAG
TCGAACCGAGCCGTGCTTAAGCTTTGTGACCGTCACCCTAGCAGCCTCTT
ACCGGCCCTGGGCATCTATCCGCTCGATGCAGCCTGCAATGTAATCAACC
CTGAGGCTTGGAGAAACCCTTTTCCACCCCCCGACAAGTTCGATGTAGAC
GCAGAGGTGGAGTTTATCGACCGGATGTGTGCAGAGGGCAAGGTGGTGGC
CGTCGGGGAGTGCGGTCTGGACGCTTACTATTGCACAGATCCCGTCGAGT
TTGCGGAACAGGAACGCGTGCTCCGGAAGTTGATAGTGGTTGCCAAAAAG
CACGATCTGCCTCTGATACTGCACACACGCAAAGCTGAACTTCGGACTTT
CGAGATTTTGCAGGAGATGGGTGTAGTCAAGGCAGATTTCCACTGCTTTT
GTGGAAAAACAAAACTGGGAAAAAGGATAGCTGAGGCTGGATACTATCTC
TCGATACCCTCTGTGGTTGCGCGAAGTGAGTCCTTCAAAAAGCTCGTGAA
AGAAGTCCCCTTAGATCAACTCTTAACAGAGACCGATTCGCCTTACCAGG
GCCCCGAAAAGAACGTGCGGAATGAGCCCGCCACTGTCCCTATCGGCGTG
CAGGCCATGGCTGAGGTTAAAGGCATTTCATTGGAGGAGGCCATGAACTC
TATACGGGAAAATTTTCGACGTTTGATGAGGAAATAAGTTTGCAAGAGCA
ACTTCCTACCGTGACGCGGATTTCAAAGTTATCTCGCGAGCGGAAAGAAT
ATCGAGCTCCCGCTACTTTTTGTCTATCGCATTGCTTGAATCTAAGAACA
ATCTTTGTTTTTTGAAAGGAAAAACGTCGCGTCGGAAGTCCGATCGTGCT
TCTTGATTCAACAGGAGCGATAAGTTTCCCGCTCCCTGCAGGTCCCGATT
CCTGAAGAAGCAAACAATAAACGTCAAGCCGATCAACCCACAGCATTTTC
TCAGGACTAGTAGATACATTGAAAGTGTGCTCAGTCAAAATCACTTACAC
GTGCCTTGATCTGTTATGTCTAATCAACTCTATCTTAAAGCCCACGACTT
ACACAAAGGTCAGAAAGATGGGAGTCTGGGTTCTCCTTTTACCATTTCAA
ACAATTCATGCCCTATGACTGTGGTGACTTAATGCTGTCATTTCCATCTT
TACCATTTGCTATCTATATTTGGCCGATGC

protein sequence of rna6412

>rna6412-protein ID=rna6412-protein|Name=rna6412|organism=Nannochloropsis gaditana|type=polypeptide|length=332bp
MHSSSGWISLPLQLGVILAVTLRGHCHLAGSSNSIQGMRPHSLAFFGNWA
TQAQASTSSTGTSRSTLATPPPSKLVDKGPSLPKLYGGWFDNTLVNQASA
AINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAARLKGPDNI
LRRQSVAYANVDIASRVAGKTGKRTLILTYDGAVDPNIIKISSKAMLTRI
NALDVEAASRANDIIFALSPGTGSQWSKASGLKTDAPVVAINAPFSLNYD
IAQGGKWEPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGV
VPKLREVSSIVREESQRRGYAALNDRYLTQRL

mRNA from alignment at CM002468.1:459745..461010+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6412 ID=rna6412|Name=rna6412|organism=Nannochloropsis gaditana|type=mRNA|length=1266bp|location=Sequence derived from alignment at CM002468.1:459745..461010+ (Nannochloropsis gaditana)
ATGCATTCCAGTAGCGGCTGGATATCTCTACCTTTGCAGTTAGGAGTGAT
TCTAGCAGTGACGTTGAGAGGGCATTGTCATTTGGCGGGCAGCTCCAACA
GCATCCAGGGCATGAGACCTCACAGTCTGGCATTCTTCGGAAATTGGGCC
ACACAAGCTCAGGCCTCAACGTCGTCAACAGGCACATCGCGCAGTACCCT
TGCCACGCCGCCACCTTCGAAGCTTGTGGATAAAGGGCCCAGTTTGCCCA
AGCTGTATGGCGGATGGTTTGATAACACCCTTGTCAATcaagcctccgcc
gccatAAATGCGGCGGTCAGAGACGGTAAGAGGTACTTGTAATGAATGGC
ACTGTATTTAATCGATGTTTTTCACATTTTGCGCATAACACACCGTCACT
CAGGTGTCAAGACTTCAGAGGTgcttttcccaccccttcctaACATGGAA
GAGCGTGAATTTGGGACTGAGCTTAATAGTAAGTGCAATGTTTGGGATTT
TCCACCTTGCGTTCAGCTTCCTAGTATCTCGTGGTATCCATTTatgtcct
ccttcacacTCTTTTTGAAGgacccctttcttttttaaaaaaagccTCAG
GGCAAATTTTTGAGAATATGTACTGATGTTTCTTTTCTACCTGTTCCTAT
GTCGCAATGATTCACAGTGAATTATAATAAGGCGGTGGCAGCTCGTCTCA
AAGGGCCTGACAACATTTTGAGGAGACAAAGTGTGGCTTACGCAAACGTG
GACATTGCCAGCCGAGTTGCTGGCAAGACGGGCAAACGTACGCTGATCTT
GACATACGACGGGGCCGTGGACCCAAATATCATAAAAATATCTAGCAAGG
CTATGCTTACGCGCATTAATGctctggacgtggaggccgcaTCACGCGCA
AATGATATTATATTCGCCCTTTCCCCGGGGACGGGATCTCAATGGAGCAA
AGCAAGCGGGTTAAAAACGGATGCACCGGTGGTGGCAATCAACGCGCCTT
TTTCATTGAATTATGATATTGCACAGGGTGGGAAATGGGAGCCGATTTAC
GTTGTCAAACGTGTCACGAAAGGTTGGGTATTTAGGGCATACCCTCATGA
GTTTAAGGTCTACCTAGACACGCCGGATGGTTCGGTGGAACTTATCAAGG
AGTTTAGGGGAGGGGTGGTTCCAAAGCTACGTGAGGTGTCATCCATCGTT
CGCGAGGAGAGCCAAAGGCGGGGATATGCTGCACTGAATGATCGATATTT
AACTCAGCGTCTTTAA

Coding sequence (CDS) from alignment at CM002468.1:459745..461010+

>rna6412 ID=rna6412|Name=rna6412|organism=Nannochloropsis gaditana|type=CDS|length=2997bp|location=Sequence derived from alignment at CM002468.1:459745..461010+ (Nannochloropsis gaditana)
ATGCATTCCAGTAGCGGCTGGATATCTCTACCTTTGCAGTTAGGAGTGAT
TCTAGCAGTGACGTTGAGAGGGCATTGTCATTTGGCGGGCAGCTCCAACA
GCATCCAGGGCATGAGACCTCACAGTCTGGCATTCTTCGGAAATTGGGCC
ACACAAGCTCAGGCCTCAACGTCGTCAACAGGCACATCGCGCAGTACCCT
TGCCACGCCGCCACCTTCGAAGCTTGTGGATAAAGGGCCCAGTTTGCCCA
AGCTGTATGGCGGATGGTTTGATAACACCCTTGTCAATcaagcctccgcc
gccatAAATGCGGCGGTCAGAGACGGTGTCAAGACTTCAGAGGTgctttt
cccaccccttcctaACATGGAAGAGCGTGAATTTGGGACTGAGCTTAATA
TGAATTATAATAAGGCGGTGGCAGCTCGTCTCAAAGGGCCTGACAACATT
TTGAGGAGACAAAGTGTGGCTTACGCAAACGTGGACATTGCCAGCCGAGT
TGCTGGCAAGACGGGCAAACGTACGCTGATCTTGACATACGACGGGGCCG
TGGACCCAAATATCATAAAAATATCTAGCAAGGCTATGCTTACGCGCATT
AATGctctggacgtggaggccgcaTCACGCGCAAATGATATTATATTCGC
CCTTTCCCCGGGGACGGGATCTCAATGGAGCAAAGCAAGCGGGTTAAAAA
CGGATGCACCGGTGGTGGCAATCAACGCGCCTTTTTCATTGAATTATGAT
ATTGCACAGGGTGGGAAATGGGAGCCGATTTACGTTGTCAAACGTGTCAC
GAAAGGTTGGGTATTTAGGGCATACCCTCATGAGTTTAAGGTCTACCTAG
ACACGCCGGATGGTTCGGTGGAACTTATCAAGGAGTTTAGGGGAGGGGTG
GTTCCAAAGCTACGTGAGGTGTCATCCATCGTTCGCGAGGAGAGCCAAAG
GCGGGGATATGCTGCACTGAATGATCGATATTTAACTCAGCGTCTTTAAA
TGCATTCCAGTAGCGGCTGGATATCTCTACCTTTGCAGTTAGGAGTGATT
CTAGCAGTGACGTTGAGAGGGCATTGTCATTTGGCGGGCAGCTCCAACAG
CATCCAGGGCATGAGACCTCACAGTCTGGCATTCTTCGGAAATTGGGCCA
CACAAGCTCAGGCCTCAACGTCGTCAACAGGCACATCGCGCAGTACCCTT
GCCACGCCGCCACCTTCGAAGCTTGTGGATAAAGGGCCCAGTTTGCCCAA
GCTGTATGGCGGATGGTTTGATAACACCCTTGTCAATcaagcctccgccg
ccatAAATGCGGCGGTCAGAGACGGTGTCAAGACTTCAGAGGTgcttttc
ccaccccttcctaACATGGAAGAGCGTGAATTTGGGACTGAGCTTAATAT
GAATTATAATAAGGCGGTGGCAGCTCGTCTCAAAGGGCCTGACAACATTT
TGAGGAGACAAAGTGTGGCTTACGCAAACGTGGACATTGCCAGCCGAGTT
GCTGGCAAGACGGGCAAACGTACGCTGATCTTGACATACGACGGGGCCGT
GGACCCAAATATCATAAAAATATCTAGCAAGGCTATGCTTACGCGCATTA
ATGctctggacgtggaggccgcaTCACGCGCAAATGATATTATATTCGCC
CTTTCCCCGGGGACGGGATCTCAATGGAGCAAAGCAAGCGGGTTAAAAAC
GGATGCACCGGTGGTGGCAATCAACGCGCCTTTTTCATTGAATTATGATA
TTGCACAGGGTGGGAAATGGGAGCCGATTTACGTTGTCAAACGTGTCACG
AAAGGTTGGGTATTTAGGGCATACCCTCATGAGTTTAAGGTCTACCTAGA
CACGCCGGATGGTTCGGTGGAACTTATCAAGGAGTTTAGGGGAGGGGTGG
TTCCAAAGCTACGTGAGGTGTCATCCATCGTTCGCGAGGAGAGCCAAAGG
CGGGGATATGCTGCACTGAATGATCGATATTTAACTCAGCGTCTTTAAAT
GCATTCCAGTAGCGGCTGGATATCTCTACCTTTGCAGTTAGGAGTGATTC
TAGCAGTGACGTTGAGAGGGCATTGTCATTTGGCGGGCAGCTCCAACAGC
ATCCAGGGCATGAGACCTCACAGTCTGGCATTCTTCGGAAATTGGGCCAC
ACAAGCTCAGGCCTCAACGTCGTCAACAGGCACATCGCGCAGTACCCTTG
CCACGCCGCCACCTTCGAAGCTTGTGGATAAAGGGCCCAGTTTGCCCAAG
CTGTATGGCGGATGGTTTGATAACACCCTTGTCAATcaagcctccgccgc
catAAATGCGGCGGTCAGAGACGGTGTCAAGACTTCAGAGGTgcttttcc
caccccttcctaACATGGAAGAGCGTGAATTTGGGACTGAGCTTAATATG
AATTATAATAAGGCGGTGGCAGCTCGTCTCAAAGGGCCTGACAACATTTT
GAGGAGACAAAGTGTGGCTTACGCAAACGTGGACATTGCCAGCCGAGTTG
CTGGCAAGACGGGCAAACGTACGCTGATCTTGACATACGACGGGGCCGTG
GACCCAAATATCATAAAAATATCTAGCAAGGCTATGCTTACGCGCATTAA
TGctctggacgtggaggccgcaTCACGCGCAAATGATATTATATTCGCCC
TTTCCCCGGGGACGGGATCTCAATGGAGCAAAGCAAGCGGGTTAAAAACG
GATGCACCGGTGGTGGCAATCAACGCGCCTTTTTCATTGAATTATGATAT
TGCACAGGGTGGGAAATGGGAGCCGATTTACGTTGTCAAACGTGTCACGA
AAGGTTGGGTATTTAGGGCATACCCTCATGAGTTTAAGGTCTACCTAGAC
ACGCCGGATGGTTCGGTGGAACTTATCAAGGAGTTTAGGGGAGGGGTGGT
TCCAAAGCTACGTGAGGTGTCATCCATCGTTCGCGAGGAGAGCCAAAGGC
GGGGATATGCTGCACTGAATGATCGATATTTAACTCAGCGTCTTTAA

Synonyms

Publications