EWM24240.1, cds6396 (CDS) Nannochloropsis gaditana

Overview
NameEWM24240.1
Unique Namecds6396
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:459745..460069 +
Alignment locationCM002468.1:460148..460222 +
Alignment locationCM002468.1:460412..461010 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24240.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100020g68.5373.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:459745..460069 +
CM002468.1supercontigCM002468.1:460148..460222 +
CM002468.1supercontigCM002468.1:460412..461010 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM24240.1 vs. NCBI_GenBank
Match: gi|585105631|gb|EWM24240.1| (hypothetical protein Naga_100020g68 [Nannochloropsis gaditana])

HSP 1 Score: 681.404 bits (1757), Expect = 0.000e+0
Identity = 332/332 (100.00%), Postives = 332/332 (100.00%), Query Frame = 0
Query:    1 MHSSSGWISLPLQLGVILAVTLRGHCHLAGSSNSIQGMRPHSLAFFGNWATQAQASTSSTGTSRSTLATPPPSKLVDKGPSLPKLYGGWFDNTLVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAARLKGPDNILRRQSVAYANVDIASRVAGKTGKRTLILTYDGAVDPNIIKISSKAMLTRINALDVEAASRANDIIFALSPGTGSQWSKASGLKTDAPVVAINAPFSLNYDIAQGGKWEPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRYLTQRL 332
            MHSSSGWISLPLQLGVILAVTLRGHCHLAGSSNSIQGMRPHSLAFFGNWATQAQASTSSTGTSRSTLATPPPSKLVDKGPSLPKLYGGWFDNTLVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAARLKGPDNILRRQSVAYANVDIASRVAGKTGKRTLILTYDGAVDPNIIKISSKAMLTRINALDVEAASRANDIIFALSPGTGSQWSKASGLKTDAPVVAINAPFSLNYDIAQGGKWEPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRYLTQRL
Sbjct:    1 MHSSSGWISLPLQLGVILAVTLRGHCHLAGSSNSIQGMRPHSLAFFGNWATQAQASTSSTGTSRSTLATPPPSKLVDKGPSLPKLYGGWFDNTLVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAARLKGPDNILRRQSVAYANVDIASRVAGKTGKRTLILTYDGAVDPNIIKISSKAMLTRINALDVEAASRANDIIFALSPGTGSQWSKASGLKTDAPVVAINAPFSLNYDIAQGGKWEPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRYLTQRL 332          
BLAST of EWM24240.1 vs. NCBI_GenBank
Match: gi|223999173|ref|XP_002289259.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974467|gb|EED92796.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 177.563 bits (449), Expect = 4.724e-50
Identity = 104/275 (37.82%), Postives = 163/275 (59.27%), Query Frame = 0
Query:   75 LVDKGPSLPKLYGGWFDNTLVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAAR---LKG---PDNILRRQSVAYANVDIASRVAGKT------GKRTLILTYDGAVDPNIIKISSKAMLTRINALDVEAA---SRANDIIFALSPGTGSQWSK--ASGLKTDAPVVAINAPFSLNYDIAQGGKWEPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRYLTQRL 332
            L+D G  +PK+Y  WF++ +  QA+AAI+ AV  G +  EV FPP+PN++E +FGT LN  + ++  AR    KG   P + L R  + YAN+  A R+AG        GK   +LT + AVD +  +I +   LTR   +  + A    R+N+ +  ++PG    W +  ++  + + P+V +N  +S  YD+     +E +Y +KR++KGWVFR++P +++ YL+ PDG+VEL+K ++    P LREVS +V E S +R YA  NDRY+  RL
Sbjct:   25 LIDGGKGMPKIYDAWFNDQITKQANAAISRAVASGKRIMEVQFPPVPNVDEVKFGTPLNQKFGQSQLARDLKCKGGYKPGSKLSRNLLPYANIYWAKRIAGAVKGGALGGKPVGVLTAE-AVDFD--EIGNLGDLTRTGKIFTDKARKEGRSNEAMICINPGGEETWERLVSAHGQPNCPLVVLNNSYSTTYDLGNKKNFEEVYYLKRISKGWVFRSFPGDWEAYLEKPDGNVELLKSYK--TKPSLREVSELVGETSFQR-YAMFNDRYMGGRL 293          
BLAST of EWM24240.1 vs. NCBI_GenBank
Match: gi|219128063|ref|XP_002184242.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217404473|gb|EEC44420.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 174.096 bits (440), Expect = 1.074e-48
Identity = 102/273 (37.36%), Postives = 158/273 (57.88%), Query Frame = 0
Query:   75 LVDKGPSLPKLYGGWFDNTLVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAARLKG------PDNILRRQSVAYANVDIASRVAGKT------GKRTLILTYDGAVDPNIIKISSKAMLTRINALDVEAASR-ANDIIFALSPGTGSQWSKASGLKT--DAPVVAINAPFSLNYDIAQGGKWEPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRYLTQRL 332
            LVD G ++P LY GW ++ +  QAS A+  A+  GVK  EV FPP+PN+EE +FGT LN  +   V AR  G      P + + RQ +AY+N+  A ++A         G +  +LT + AV+  +I+ S    + R  +L   A+    N+ +  ++PG   QW +   +    D P V +N  +S  YD+     +E  Y +KR++KGWVFRA+P  ++ YL+ PDG+VEL+  ++  + P L+EV++ VREES +R YA  NDR+++ RL
Sbjct:   26 LVDGGKNMPALYNGWMNDQIAKQASTAVGKAIASGVKQIEVNFPPVPNVEEAKFGTPLNQLFGTKVVAREIGFTGGYKPGSDVSRQLIAYSNMYWAKKIAPAIGGGIMGGSKVTVLTAE-AVNLKLIQNSG---VGRTASLSPRASQEFQNEAVIVVNPGGEEQWERIRAVHASDDIPFVILNNAYSTTYDLGNKRGYEEAYFLKRISKGWVFRAFPGPWQAYLEKPDGNVELLASYK--IKPSLKEVATAVREESFKR-YAMGNDRWMSGRL 291          
BLAST of EWM24240.1 vs. NCBI_GenBank
Match: gi|1210516909|dbj|GAX24398.1| (hypothetical protein FisN_4Lh533 [Fistulifera solaris])

HSP 1 Score: 158.303 bits (399), Expect = 1.388e-42
Identity = 98/275 (35.64%), Postives = 151/275 (54.91%), Query Frame = 0
Query:   75 LVDKGPSLPKLYGGWFDNTLVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAAR-LK-----GPDNILRRQSVAYANVDIASRVA-----GKTGKRTLILTYDGAVDPNIIKISSKAMLTRINALDVEAA--SRANDIIFALSPGTGSQWSK-ASGLKTDAPVVAINAPFSLNYDIAQGGKWEPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRYL---TQRL 332
            L+D G  +PK Y  WFD+ +V QAS A+  A+  G K  EV FP +PN+EE +FGT LN  +   V AR LK      P + + R  +AY+NV  A ++A     G  G R + +     V  N+ +I S+  +++I +L +      +    + A++PG    W +  S     +P+V +N  +S  Y +     +E  Y VKR++KGW+FR +P  +K YL+ PDGS EL++ +     P+L  V+++VR+ES +R YA  NDR+     QRL
Sbjct:   20 LIDGGTDIPKFYKSWFDDQIVKQASTAVEKAIAAGNKKIEVNFPAVPNVEEAKFGTSLNQKFGTTVVARELKIAGGYTPGSDIARNLIAYSNVYWAKKIAPAVGGGLLGGRPVTVVTPEQV--NMKQIQSRGAMSQILSLKMSKGVEVKQGGALIAINPGGEETWDRIQSAFGNGSPMVVLNNAYSTTYGLGNKRGYEEAYFVKRISKGWIFRCFPGPWKAYLEKPDGSCELLETYSSK--PELNVVATLVRDESFKR-YAINNDRWFPGQGQRL 289          
BLAST of EWM24240.1 vs. NCBI_GenBank
Match: gi|1072225180|gb|OEU09928.1| (hypothetical protein FRACYDRAFT_248179 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 158.303 bits (399), Expect = 2.841e-42
Identity = 96/280 (34.29%), Postives = 153/280 (54.64%), Query Frame = 0
Query:   75 LVDKGPSLPKLYGGWFDNTLVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAAR---LKG---PDNILRRQSVAYANVDIASRVAGKTG--------KRTLILTYDGAVDPNIIKISSKAMLTRINALDVEAAS-----RANDIIFALSPGTGSQWSKASGLKT---DAPVVAINAPFSLNYDIAQGGKWEPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRYLTQRL 332
             +D G  +PKLY G+FD+ +  QA+ A+ AA+  G K  EV  P +PN+EE +FGT LN  ++K +  +   +KG   P + + RQ ++YAN+  A +++G           K   +L+ +  +D  +IK  +K  + +I  +     S       +D    ++PG    W +     T   + P V +N  +S  Y +    K+E  Y +KR+TKGW++RAYP  +K YL+ PDGS EL+K F     P+LR  + +VREES +R YA  NDR+++ R+
Sbjct:   45 FLDGGKDIPKLYNGYFDSQIAKQAATAVGAAISSGKKNIEVNLPAVPNLEEVKFGTPLNQKFSKTIVTKDLKVKGGYYPGSDIARQQLSYANMYWAKQISGAVSGGIGGIGGKSVTVLSAE-PLDYELIK--NKGGMNKIGPIRTGLGSGNKKDTLSDACIVINPGGEETWDRLRQSLTKNKNCPFVVLNNAYSTTYGLGNKRKYEEAYYLKRITKGWIYRAYPGPWKAYLEAPDGSTELLKTFN--TKPELRVAAELVREESFKR-YAISNDRWMSGRM 318          
BLAST of EWM24240.1 vs. NCBI_GenBank
Match: gi|1210515020|dbj|GAX25983.1| (hypothetical protein FisN_4Hh533 [Fistulifera solaris])

HSP 1 Score: 155.606 bits (392), Expect = 1.439e-41
Identity = 98/275 (35.64%), Postives = 149/275 (54.18%), Query Frame = 0
Query:   75 LVDKGPSLPKLYGGWFDNTLVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAAR-LK-----GPDNILRRQSVAYANVDIASRVA-----GKTGKRTLILTYDGAVDPNIIKISSKAMLTRINALDVEAA--SRANDIIFALSPGTGSQWSK-ASGLKTDAPVVAINAPFSLNYDIAQGGKWEPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRYL---TQRL 332
            L+D G  +P  Y  WFD+ +V QAS A+  A+  G K  EV FP +PN+EE +FGT LN  +   V AR LK      P + + R  +AY+NV  A ++A     G  G R + +     V  NI +I S+  +++I +L +      +    + A++PG    W +  S     +P+V +N  +S  Y +     +E  Y VKR++KGW+FR +P  +K YL+ PDGS EL++ +     P+L  V++ VR+ES +R YA  NDR+     QRL
Sbjct:   20 LIDGGTDIPTFYKSWFDDQIVKQASTAVEKAIAAGNKKIEVNFPAVPNVEEAKFGTSLNQKFGTTVVARELKIAGGYTPGSDIARNLIAYSNVYWAKKIAPAVGGGLLGGRPVTVVTPEQV--NIKQIQSRGAMSQILSLKMSKGVEVKQGGALIAINPGGEETWDRIQSAFGNGSPMVVLNNAYSTTYGLGNKRGYEEAYFVKRISKGWIFRCFPGPWKAYLEKPDGSCELLETYS--TKPELNVVATRVRDESFKR-YAINNDRWFPGQGQRL 289          
BLAST of EWM24240.1 vs. NCBI_GenBank
Match: gi|298711618|emb|CBJ32675.1| (immunophilin [Ectocarpus siliculosus])

HSP 1 Score: 133.265 bits (334), Expect = 6.994e-33
Identity = 87/263 (33.08%), Postives = 136/263 (51.71%), Query Frame = 0
Query:   79 GPS--LPKLYGGWFDNT--LVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAARLK----GPDNILRRQSVAYANVDIASRVAGKTGKRTLILTYDG-AVDPNIIKISSKAMLTRINALDVEAASRANDIIFALSPGTGSQWSKASGLKTDAPVVAINAPFSLNYDIAQGGK-WEPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRYLTQR 331
            GPS  +PKLY GWF  T  +     A   +A+R G K  E+ F P+PN+EE +FGT  N  +   VA  L      P + +R   V Y+N+  A ++A   G    + T DG   D ++IK   KA    +   +  AA +  D +  ++PG  ++W+  +    +  V+ +NAP S  YD+    K  E  Y +KRV+KG+VFR  P  ++  L+ P G +E++ ++     P LR V+ +VR ES +R +   NDR+   +
Sbjct:   51 GPSGVMPKLYEGWFKKTGQIEKDIVAGAKSALRTG-KPVEICFFPVPNLEEVQFGTATNKAFGTEVAKDLGMGEYKPGSTIRTYLVQYSNIYWAKKLADGLGGTCWVATSDGLKKDTSVIKKPGKAKFCSLRKPETFAAMKKGDTVIVVAPGPTAEWASCAQRFKEQKVIFLNAPLSETYDLGGPLKDLEQGYYLKRVSKGYVFRVSPKPWEALLEKPGGGLEILGKYN--EKPLLRNVAKVVRSESMKR-FGMSNDRWTNDK 309          
BLAST of EWM24240.1 vs. NCBI_GenBank
Match: gi|676391477|ref|XP_009039016.1| (hypothetical protein AURANDRAFT_65647 [Aureococcus anophagefferens] >gi|323450564|gb|EGB06445.1| hypothetical protein AURANDRAFT_65647 [Aureococcus anophagefferens])

HSP 1 Score: 130.954 bits (328), Expect = 8.902e-32
Identity = 91/282 (32.27%), Postives = 144/282 (51.06%), Query Frame = 0
Query:   80 PSLPKLYGGWFDNTLVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAARL---KGPDN-------------------ILRRQSVAYANVDIASRVAGKTG--KRTLILTYDGAVDPN-IIKISSKAMLTRINALDVEAASRANDIIFALSPGTGSQWSKAS--GLKTDAPVVAINAPFSLNYDIAQGGKW---EPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRYLTQR 331
            PS PK+Y  WF + +     A + A +R G++  EV   P+PN+EE +FGT LN  +   VA  L    GP                     +++R  V+YANV+ A RVA   G  ++  +L  +G VD +   K+    ++  + + DV+  S   D +  ++PG  + W++    G    APVV +N+  S  Y +  GG     E +Y +K V+KG+V+RA+P+ ++V+LD PDG+ E +K F     P L E+S I R  SQ +  A  N+++   R
Sbjct:   58 PSFPKIYESWFGDDMAGAMRAGVGAGLRSGLQFMEVRTQPVPNLEEAKFGTPLNERFQIEVARNLGLSDGPSAYVDDEAARKNVRRFDKNYMLVKRDPVSYANVEWARRVAPAFGSKRKIWVLLAEGRVDTSGCAKLPKNFVVKPLESPDVDVQS--GDAVIVVAPGVTASWTRGYDIGAAAGAPVVFLNSQLSEKYQL--GGPLADVEEVYYLKPVSKGFVYRAWPNPWEVWLDKPDGTQERLKVF-SDERPTLGELSQITRSASQSKYGAIFNEKFTNDR 334          
BLAST of EWM24240.1 vs. NCBI_GenBank
Match: gi|546314037|ref|XP_005715468.1| (unnamed protein product [Chondrus crispus] >gi|507111946|emb|CDF35649.1| unnamed protein product [Chondrus crispus])

HSP 1 Score: 128.257 bits (321), Expect = 1.867e-30
Identity = 86/267 (32.21%), Postives = 137/267 (51.31%), Query Frame = 0
Query:   81 SLPKLYGGWF--DNTLVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAARL----KGPDNILRRQSVAYANVDIASRVAGKTGKRTLILTYDGAVDPNIIKISSKAMLTRINALDVEAASRA-----NDIIFALSPGTGSQWSKASGL---KTDAPVVAINAPFSLNYDIA--QGGKW---EPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRYL 328
            S+PKLY  WF  D+ L +QA  A++ A   GV+  E+ +P +PN+EE E GT+LN  + K V+  L    +    +++R    + N+  A R+A     R   +      D  + K  ++  L  +    V    +      +D++  L P   S W K + L     +  VV +N+ F+  Y +   + G     EP+Y +KRVT+G+VFR++P  +  YL+ PD SVE++ EF    +PKL E++ +VRE S  R     NDRY+
Sbjct:   95 SMPKLYDAWFEPDHELASQACCAVDRAYSSGVRKMELQWPTVPNLEEIEAGTKLNFEFGKQVSRNLGMATQSDYPLIKRYLAQFCNLYWAKRIASCESFRDRTVWALSCDD--VSKNRAEGYLENVRPGSVRNPPKKGEIGKDDVVMILDPRDTSAWVKGAKLLPQGGEGVVVFLNSQFNETYGLTGPRNGVLKGTEPVYFLKRVTRGYVFRSFPEPWLAYLEKPDMSVEVVGEFEK--LPKLSEIAKVVREVSNNRYGGFYNDRYV 357          
BLAST of EWM24240.1 vs. NCBI_GenBank
Match: gi|551650521|ref|XP_005828043.1| (hypothetical protein GUITHDRAFT_48967, partial [Guillardia theta CCMP2712] >gi|428172152|gb|EKX41063.1| hypothetical protein GUITHDRAFT_48967, partial [Guillardia theta CCMP2712])

HSP 1 Score: 119.783 bits (299), Expect = 2.040e-28
Identity = 81/253 (32.02%), Postives = 129/253 (50.99%), Query Frame = 0
Query:   82 LPKLYGGWF-DNTLVNQASAAINAAVRDGVKTSEVLFPPLPNMEEREFGTELNMNYNKAVAARLKGPDNI----LRRQSVAYANVDIASRVAGKTGKRTLILTY-DGAVDPNIIKISSKAMLTRINALDVEAASRANDIIFALSPGTGSQWSKA-SGLKTDAPVVAINAPFSLNYDIAQGGKWEPIYVVKRVTKGWVFRAYPHEFKVYLDTPDGSVELIKEFRGGVVPKLREVSSIVREESQRRGYAALNDRY 327
            +P LY GWF    + +Q   A+  A+ DG+   EV FPP+PN+EE +FGT LN  +   +   L   D      +RR  + +AN+  +  +A   G + + + Y D     N         + R+  +      R  ++   ++PG  SQW KA S     +P++ +N       D +  G  E +Y +KR++KGWVFR YP  ++  ++ PDG+VE +  +     P LREVS +VRE S ++ ++  NDRY
Sbjct:    1 MPTLYNGWFWTGEVRDQMLKAVGQALADGLTRMEVNFPPVPNLEEVDFGTALNQQFAIEIRDVLGMEDQKYKIEVRRSLIDFANLYWSRALAAVAGGQPVYVQYCDQTSKKNANSPGENVWIGRLETIPRTLTER-QELSIVVNPGDVSQWKKALSYSGPSSPLIFLNRESFAQRDGSTKGV-EQVYYLKRISKGWVFRQYPGPWQALVEKPDGTVECVATYNKR--PLLREVSKVVREYSFQQ-FSIFNDRY 248          
The following BLAST results are available for this feature:
BLAST of EWM24240.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105631|gb|EWM24240.1|0.000e+0100.00hypothetical protein Naga_100020g68 [Nannochlorops... [more]
gi|223999173|ref|XP_002289259.1|4.724e-5037.82predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|219128063|ref|XP_002184242.1|1.074e-4837.36predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210516909|dbj|GAX24398.1|1.388e-4235.64hypothetical protein FisN_4Lh533 [Fistulifera sola... [more]
gi|1072225180|gb|OEU09928.1|2.841e-4234.29hypothetical protein FRACYDRAFT_248179 [Fragilario... [more]
gi|1210515020|dbj|GAX25983.1|1.439e-4135.64hypothetical protein FisN_4Hh533 [Fistulifera sola... [more]
gi|298711618|emb|CBJ32675.1|6.994e-3333.08immunophilin [Ectocarpus siliculosus][more]
gi|676391477|ref|XP_009039016.1|8.902e-3232.27hypothetical protein AURANDRAFT_65647 [Aureococcus... [more]
gi|546314037|ref|XP_005715468.1|1.867e-3032.21unnamed protein product [Chondrus crispus] >gi|507... [more]
gi|551650521|ref|XP_005828043.1|2.040e-2832.02hypothetical protein GUITHDRAFT_48967, partial [Gu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6412rna6412Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications