rna6411, rna6411 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6411
Unique Name	rna6411
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2566
Alignment location	CM002468.1:457503..459682 -

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Properties


Property Name	Value
Product	hydrolase
Orig transcript id	gnl\|cribi\|Naga_100020g69.5415.mrna
Orig protein id	gnl\|cribi\|Naga_100020g69.5415
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:457503..459682 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g69	gene6195	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24282.1	cds6395	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6411	rna6411-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:457503..459682-
coding sequence from alignment at CM002468.1:457503..459682-

mRNA sequence

>rna6411 ID=rna6411|Name=rna6411|organism=Nannochloropsis gaditana|type=mRNA|length=2566bp
TATCCAGACAGGCTCATCAACGTATAGCTGGGAGAAGTAATTGAGTCGGA
GGCCGGTGAGAGACATTCATTATCCTCATGAATGCGTCGCTGCGACAACG
CCCCTCGCGCCGACGGGAGGAGGGCGTGTCCCCTCTGGTAGCACACTATG
TCTCGGAGTCTGCGAGTTGCAAAGATACGACTTCTCCTTCGCAAAGCACC
GTTGACAGAAAAAATAGTAATACGTTTGGCAAAGTTGATGTCATAGAGGA
CTCTCCACCATTACTGAGGAGTCCACGATCTCACAGCGACGGCGGCGAAA
ATGTCGGAGGCACCGCTTACCTGTACGGTGGTGGTATGAAAAGGTCTCGC
TCGTTCCTGGACCTGATTAATGAAAAAATCGAGCAAGAGCCTTCCACGAA
TCCAGACACGGTCTCTCTTTATCTCAAATTTATCGTCGCGCTCGATTTCC
TGGCAGTAGCCACGGTCGTGCCGCTGCTTCCGCAGTACCTTGCTCGCACC
GGCTGTTGCAACGAGCAGCTGGCCTTCATCTCCTCCGCCTACAGCCTTGC
GCAGCTTGTGGGCGGCGTCCTCTTAGGCTGGGTCTCTGACGGTATCATGA
CTCGGAAGACGATACTTATGACCTCGCTGCTCGGGTCCGCCGCCGCCTAC
GGCATGGTGGGCGCCTCCTCCTCGCGCCCTCTCCTCATCCTCTCTCGCAT
TGTCGTCGGCCTCGTCAAGCAGACGATGACCATGACCACGGCCCTCATCT
CGGACCTGCCGCTCGATCGATCGCGTCGCACGAAGCACATGAGCCACCTG
ACCGCCGCTGTGACCGTGTCCTGGATCCTGGGGCCTGCCCTTGGGGGCTA
TCTCTTCTGGCTCTCCCCGCGCCTCCCACCACTCGTCGCCGCCTTCATAT
TCACCCTGGCAGCCTTAGTCTGCCTTATAGGCGTGCCCAACCACCCCGAC
CGCGGCCCTCCGGGCTACTCCCCTCTCTCCACCTCCATCTCCTCCCCAGA
CCTCCTAGGTATGATAGGCCAGGGTAACGGGAGTCAGTACAAGCCCAAGT
CCAAAAGCCTCCACGCCTTCCTCTTCACATTGAAGAATAACTTCCGGGAG
GCTTTCAACGACCCCACCATCATCCGCATCGTCAGCATCCGCCTTCTGTA
TAGCTTCACCATCATCTCGCTCATGCCCACAAATTTTATCGGATACCTGG
AGGCCCGGTACGGACTCAAATCCCACGAGGTCGCATACCTCCACTCCTAT
CGCGCCACCCTCTCCTTTCTGGCGCAGACCTTTCTTGTCAGCGCGGTGGT
GCGGCACCATACGTTCTCAGAGGAGGCCACGGCCAGGGTCGCGATCGTCC
TGGGCGTGTTCCTCAAGTACTCCGAGGTCCTAAATCGGGACAGGCTGGTC
TTCCTCTTTCTCACCACTCCGGCGATCGTGGCCATTTTCTCGCTCTTTGA
CTGCTCCTTGCAGGGCATCTACACGGACAGTATCCCTGCGGGACACCGCG
GCGCAGCCTTGGGCTCCATGAGTGCGCTGCAGTCGCTCGTCAAGATCGCG
GCCCCCCTCTACGGCGGTGAGATTTTCCAGCGTGTGGGCCACGAGCGTCG
GCCTGAGATCATCTTCTTCCACTACATAGTGCTTGCCACAGTGGTGTGGC
TTGTCTTTCCTCCAGGGCGGCATCGACCGAAACGCCCGCCCTTAGCCCCG
TCGGCCTCGGCGGGGTCGCTGTCACAGATCGTGGAAGGGAAGGAGGAGGG
AAGTTCTGGGCGTAGCAAGGGAAGCTCCTGCAGGACCGATGGCAAGCGTG
ACAGCAGTACAAATGATAGGGAAGGAAAGCACTTACATGCCCAAGACATG
AGCGTGCCCACTCCCTACGCAAATCTTTCCTCGGTTAGTGTCAGCGAAAG
TGCGCCTTTCCGTGGTCCCGCTGCCGCAGCTGAGAAAGCTGCCGCCGCAC
CGGCCGTCCCGTCGGCCGCACTGACAGATATGGGCAATCCCCAGGCAAAG
AATAGGGAGGAGGGATCAGGGGTCATAAGGCGTGGGGGAATGACAAGCTT
GCCCTCCTCAGAGAGATTGCATCCCATTCGAGGTCGATTTGACCGCGGAA
GTCGGGTTCGCATCGGCCAAATATAGATAGCAAATGGTAAAGATGGAAAT
GACAGCATTAAGTCACCACAGTCATAGGGCATGAATTGTTTGAAATGGTA
AAAGGAGAACCCAGACTCCCATCTTTCTGACCTTTGTGTAAGTCGTGGGC
TTTAAGATAGAGTTGATTAGACATAACAGATCAAGGCACGTGTAAGTGAT
TTTGACTGAGCACACTTTCAATGTATCTACTAGTCCTGAGAAAATGCTGT
GGGTTGATCGGCTTGACGTTTATTGTTTGCTTCTTCAGGAATCGGGACCT
GCAGGGAGCGGGAAACTTATCGCTCCTGTTGAATCAAGAAGCACGATCGG
ACTTCCGACGCGACGTTTTTCCTTTCAAAAAACAAAGATTGTTCTTAGAT
TCAAGCAATGCGATAGACAAAAAGTAGCGGGAGCTCGATATTCTTTCCGC
TCGCGAGATAACTTTG

protein sequence of rna6411

>rna6411-protein ID=rna6411-protein|Name=rna6411|organism=Nannochloropsis gaditana|type=polypeptide|length=341bp
MSSGRVRAPFSCFTTCMLTLFCRTAGAAAHVSFLTSSQRPLSSSHCNSRI
LCGSSRMLNMMKAAAGDSSQLNRFVDVHCHIIHEQFAGEEDAVAQRAKDK
GLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAW
RNPFPPPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQ
ERVLRKLIVVAKKHDLPLILHTRKAELRTFEILQEMGVVKADFHCFCGKT
KLGKRIAEAGYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEK
NVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENFRRLMRK

mRNA from alignment at CM002468.1:457503..459682-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6411 ID=rna6411|Name=rna6411|organism=Nannochloropsis gaditana|type=mRNA|length=2180bp|location=Sequence derived from alignment at CM002468.1:457503..459682- (Nannochloropsis gaditana)
GCCCGTAGACACAGGGACAATGTACAGATCAAAAACATCCACCGCCCCAT
TTGCGACATTGTAAAACAAAAAAACAAGAATATTACCGACGGGAGCGGAC
AGTGGTGGCAGCTGTGTGCTCATGCGCCTTCTTTATCTTCATCCCTCGCT
GCATTTCCCCCGCCGCATGCGCCCCGCTGGGAGGGCTTGCTTCTTGACTG
CGTGTCCTTGCTCCCGTCTGGCTTTCCTTACCCTCAAAATGTATCACTTG
GATGTTTTGAGACTTTAGGCGGCTCTCTTAATATCGTCGCTGTATATAGT
CTTGTAGTGGCGGGGGAAGTGCTCCGACGACAAGCTCTCAGGCTAGGCTA
GTGACACAGACGCTGGATGTCTATAATGGCAACTCGGGTTTCGCAGAAAC
ATCCACGCCCAAAGCTTGCTCCTGTTCAAGCCGGGTGAAGTTTTTGATTC
GAGGCTTCCCACATTTTAGAAAATACGTTTCACACACAGGTTCACATGCG
GTGATTCAGCGGATGTCCAACAAGTACCTGTCTCGGGTGCGATGAGCAAC
TTGATTCCGCCACAAAGCTTTGTGTAGGCTCAAAGGTCCAGGACGCATCT
TCACCACTAGCTCTCCATTGCTCTCTACCTTATTGGGCCAGCGCTGCCTG
CTCTTCTTTGCATGAGCTCTGGTCGTGTCCGAGCTCCCTTCTCCTGTTTT
ACTACTTGCATGCTCACGCTGTTCTGCAGAACAGCAGGAGCTGCAGCCCA
CGTTTCTTTCCTGACATCGTCTCAAAGGCCGTTGTCGTCCTCCCATTGTA
ACAGTCGGATTTTGTGCGGCAGCAGCCGGATGCTCAACATGATGAAGGCC
GCTGCCGGGGACTCGTCCCAATTGAATCGATTTGTTGACGTGCATTGCCA
TATTATCCATGAGCAATTTGCTGGAGAAGAAGACGCCGTGGCTCAAAGAG
CGAAAGATAAGGGACTGGAGTACTGTGTGGTTAACGGATTGGAGCCGCAG
TCGAACCGAGCCGTGCTTAAGCTTTGTGACCGTCACCCTAGCAGCCTCTT
ACCGGCCCTGGGCATCTATCCGCTCGATGCAGCCTGCAATGTAATCAACC
CTGAGGCTTGGAGAAACCCTTTTCCACCCCCCGACAAGTTCGATGTAGAC
GCAGAGGTGGAGTTTATCGACCGGATGTGTGCAGAGGGCAAGGTGGTGGC
CGTCGGGGAGTGCGGTCTGGACGCTTACTATTGCACAGATCCCGTCGAGT
TTGCGGAACAGGAACGCGTGCTCCGGAAGTTGATAGTGGTTGCCAAAAAG
CACGATCTGCCTCTGATACTGCACACACGCAAAGCTGAACTTCGGACTTT
CGAGATTTTGCAGGAGATGGGTGTAGTCAAGGCAGATTTCCACTGCTTTT
GTGGAAAAACAAAACTGGGAAAAAGGATAGCTGAGGCTGGATACTATCTC
TCGATACCCTCTGTGGTTGCGCGAAGTGAGTCCTTCAAAAAGCTCGTGAA
AGAAGTCCCCTTAGATCAACTCTTAACAGAGACCGATTCGCCTTACCAGG
GCCCCGAAAAGAACGTGCGGAATGAGCCCGCCACTGTCCCTATCGGCGTG
CAGGCCATGGCTGAGGTTAAAGGCATTTCATTGGAGGAGGCCATGAACTC
TATACGGGAAAATTTTCGACGTTTGATGAGGAAATAAGTTTGCAAGAGCA
ACTTCCTACCGTGACGCGGATTTCAAAGTTATCTCGCGAGCGGAAAGAAT
ATCGAGCTCCCGCTACTTTTTGTCTATCGCATTGCTTGAATCTAAGAACA
ATCTTTGTTTTTTGAAAGGAAAAACGTCGCGTCGGAAGTCCGATCGTGCT
TCTTGATTCAACAGGAGCGATAAGTTTCCCGCTCCCTGCAGGTCCCGATT
CCTGAAGAAGCAAACAATAAACGTCAAGCCGATCAACCCACAGCATTTTC
TCAGGACTAGTAGATACATTGAAAGTGTGCTCAGTCAAAATCACTTACAC
GTGCCTTGATCTGTTATGTCTAATCAACTCTATCTTAAAGCCCACGACTT
ACACAAAGGTCAGAAAGATGGGAGTCTGGGTTCTCCTTTTACCATTTCAA
ACAATTCATGCCCTATGACTGTGGTGACTTAATGCTGTCATTTCCATCTT
TACCATTTGCTATCTATATTTGGCCGATGC

Coding sequence (CDS) from alignment at CM002468.1:457503..459682-

>rna6411 ID=rna6411|Name=rna6411|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002468.1:457503..459682- (Nannochloropsis gaditana)
ATGAGCTCTGGTCGTGTCCGAGCTCCCTTCTCCTGTTTTACTACTTGCAT
GCTCACGCTGTTCTGCAGAACAGCAGGAGCTGCAGCCCACGTTTCTTTCC
TGACATCGTCTCAAAGGCCGTTGTCGTCCTCCCATTGTAACAGTCGGATT
TTGTGCGGCAGCAGCCGGATGCTCAACATGATGAAGGCCGCTGCCGGGGA
CTCGTCCCAATTGAATCGATTTGTTGACGTGCATTGCCATATTATCCATG
AGCAATTTGCTGGAGAAGAAGACGCCGTGGCTCAAAGAGCGAAAGATAAG
GGACTGGAGTACTGTGTGGTTAACGGATTGGAGCCGCAGTCGAACCGAGC
CGTGCTTAAGCTTTGTGACCGTCACCCTAGCAGCCTCTTACCGGCCCTGG
GCATCTATCCGCTCGATGCAGCCTGCAATGTAATCAACCCTGAGGCTTGG
AGAAACCCTTTTCCACCCCCCGACAAGTTCGATGTAGACGCAGAGGTGGA
GTTTATCGACCGGATGTGTGCAGAGGGCAAGGTGGTGGCCGTCGGGGAGT
GCGGTCTGGACGCTTACTATTGCACAGATCCCGTCGAGTTTGCGGAACAG
GAACGCGTGCTCCGGAAGTTGATAGTGGTTGCCAAAAAGCACGATCTGCC
TCTGATACTGCACACACGCAAAGCTGAACTTCGGACTTTCGAGATTTTGC
AGGAGATGGGTGTAGTCAAGGCAGATTTCCACTGCTTTTGTGGAAAAACA
AAACTGGGAAAAAGGATAGCTGAGGCTGGATACTATCTCTCGATACCCTC
TGTGGTTGCGCGAAGTGAGTCCTTCAAAAAGCTCGTGAAAGAAGTCCCCT
TAGATCAACTCTTAACAGAGACCGATTCGCCTTACCAGGGCCCCGAAAAG
AACGTGCGGAATGAGCCCGCCACTGTCCCTATCGGCGTGCAGGCCATGGC
TGAGGTTAAAGGCATTTCATTGGAGGAGGCCATGAACTCTATACGGGAAA
ATTTTCGACGTTTGATGAGGAAATAA

Synonyms

Publications