EWM24282.1, cds6395 (CDS) Nannochloropsis gaditana

Overview
NameEWM24282.1
Unique Namecds6395
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:457996..459021 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24282.1
Producthydrolase
Orig transcript idgnl|cribi|Naga_100020g69.5415.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:457996..459021 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0016888endodeoxyribonuclease activity, producing 5'-phosphomonoesters
Vocabulary: INTERPRO
TermDefinition
IPR018228DNase_TatD-rel_CS
IPR001130TatD_family
Homology
BLAST of EWM24282.1 vs. NCBI_GenBank
Match: gi|585105673|gb|EWM24282.1| (hydrolase [Nannochloropsis gaditana])

HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 0
Query:    1 MSSGRVRAPFSCFTTCMLTLFCRTAGAAAHVSFLTSSQRPLSSSHCNSRILCGSSRMLNMMKAAAGDSSQLNRFVDVHCHIIHEQFAGEEDAVAQRAKDKGLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAWRNPFPPPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQERVLRKLIVVAKKHDLPLILHTRKAELRTFEILQEMGVVKADFHCFCGKTKLGKRIAEAGYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEKNVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENFRRLMRK 341
            MSSGRVRAPFSCFTTCMLTLFCRTAGAAAHVSFLTSSQRPLSSSHCNSRILCGSSRMLNMMKAAAGDSSQLNRFVDVHCHIIHEQFAGEEDAVAQRAKDKGLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAWRNPFPPPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQERVLRKLIVVAKKHDLPLILHTRKAELRTFEILQEMGVVKADFHCFCGKTKLGKRIAEAGYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEKNVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENFRRLMRK
Sbjct:    1 MSSGRVRAPFSCFTTCMLTLFCRTAGAAAHVSFLTSSQRPLSSSHCNSRILCGSSRMLNMMKAAAGDSSQLNRFVDVHCHIIHEQFAGEEDAVAQRAKDKGLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAWRNPFPPPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQERVLRKLIVVAKKHDLPLILHTRKAELRTFEILQEMGVVKADFHCFCGKTKLGKRIAEAGYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEKNVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENFRRLMRK 341          
BLAST of EWM24282.1 vs. NCBI_GenBank
Match: gi|1182762266|emb|SMF54886.1| (TatD DNase family protein [Pseudobacteriovorax antillogorgiicola])

HSP 1 Score: 234.187 bits (596), Expect = 2.202e-72
Identity = 121/267 (45.32%), Postives = 171/267 (64.04%), Query Frame = 0
Query:   74 FVDVHCHIIHEQFAGEEDAVAQRAKDKGLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAWRNPFPPPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQERVLRKLIVVAKKHDLPLILHTRKAELRTFEILQEMGVVKADFHCFCGKTKLGKRIAEA-GYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEKNVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENFRRLM 339
            ++D+H H+ HE+F+ + + V QRAKD  L   VVNGLEP SNR +LK+  +H   + PALGIYP+DA    IN  A   PF    +FDVD E+EFI      G + AVGECGLD Y+  +   F EQERV  KL+ +A  HDLP+I+HTRK E R+ EIL+     + +FHC+ GK KL  R+AE  G++ SIP+   ++++F K++ E+P   +LTETD+P+  PE+  RNEP  V   +  +AE++   L++A   +  NF+RLM
Sbjct:    2 YIDIHTHLTHEKFSADLEQVIQRAKDAQLSAIVVNGLEPASNREILKMAAKH-DVIYPALGIYPIDA----INKLAQDLPFSVA-QFDVDKEIEFIAAQAKAGAIKAVGECGLDGYWVGEET-FTEQERVFIKLLDIAMTHDLPIIIHTRKREKRSIEILEHYKPKRVNFHCYGGKVKLALRVAEEHGWHFSIPANARKNQAFTKMLLELPEASILTETDAPFLAPEQGQRNEPCHVVGTIAYLAELRQWPLDKARELVLNNFKRLM 261          
BLAST of EWM24282.1 vs. NCBI_GenBank
Match: gi|1101215908|gb|OIP64910.1| (hypothetical protein AUK30_05710 [Nitrospirae bacterium CG2_30_70_394])

HSP 1 Score: 205.297 bits (521), Expect = 6.785e-61
Identity = 110/267 (41.20%), Postives = 155/267 (58.05%), Query Frame = 0
Query:   74 FVDVHCHIIHEQFAGEEDAVAQRAKDKGLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAWRNPFPPPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQERVLRKLIVVAKKHDLPLILHTRKAELRTFEILQEMGVVKADFHCFCGKTKLGKRIAEAGYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEKNVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENFRRLMR 340
              D H H+    FAG+ DAV  RA+  G+ + V NG +  +NRA L L   HP  +LPALGIYP+DA  N +       P+      DV AE+ FID   +    VA+GECGLD ++    ++   Q  V   LI +A +HD PLI+H+R+AE    E+L   G  + D HCF G+ KL +R   AG+Y SIP+ +   E F+K+ +++PL  LLTETD+PY  P +  RNEPA V   V A+AE++ + ++E   ++  NF RL R
Sbjct:    2 LFDCHTHLTDPAFAGDLDAVLARARAAGVRWMVTNGTDGPTNRAALALAATHPE-ILPALGIYPVDAVANEVLASGPTLPWTQA-PCDVAAELAFIDAHAS--AAVAIGECGLDGHWVATHLD--RQREVFAALIDLALRHDRPLIVHSRRAEAEAVEMLLARGATRVDLHCFSGRFKLAQRACAAGFYCSIPATLPHHELFQKMARDLPLTSLLTETDAPYLAPVRGERNEPAHVAATVAAIAELRHLPVDEVEATLEANFCRLFR 262          
BLAST of EWM24282.1 vs. NCBI_GenBank
Match: gi|735012722|gb|KHO46788.1| (TatD DNase family protein [archaeon GW2011_AR3])

HSP 1 Score: 195.667 bits (496), Expect = 2.435e-57
Identity = 107/270 (39.63%), Postives = 166/270 (61.48%), Query Frame = 0
Query:   68 SSQLNRFVDVHCHIIHEQFAGEEDAVAQRAKDKGLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAWRNPFPPPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQERVLRKLIVVAKKHDLPLILHTRKAELRTFEILQEMGVVKADFHCFCGKTKLGKRIAEAGYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEKNVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENFRR 337
            S  +   VDVH H+  E+F  + D V +RA++ GL++ V NGL+ +SNR VL+L  ++   +  ALGIYP++A          R+        ++DAE+ FI +   +GK++ +GE G+D ++   P   A Q+ +  K I +A++ D+PLI+H+R AE  T +IL+  G  K   HCF G  +L +RI +  + LSIP+ V  S  F+K+VK+V + QLLTETD+PY GPE+  RNEPA V   V+ +AE+KG++ EE   +I  N+++
Sbjct:    5 SLSMGLLVDVHAHLDSEKFKTDLDEVMERARNAGLKHIVSNGLDAKSNRRVLELAGKY-GEIKAALGIYPIEAL-------KLRDD-------EIDAEIGFIRQ--NKGKIIGIGEVGVDYHWDKTPEGHARQKGIFSKFISLAREIDVPLIVHSRDAEADTVDILEHEGCKKVVMHCFGGSMELVERIEKNRWVLSIPANVVVSGHFQKIVKKVSITQLLTETDAPYLGPERGKRNEPANVSGAVKKIAELKGMTEEETAKNIYMNYQK 257          
BLAST of EWM24282.1 vs. NCBI_GenBank
Match: gi|1101104468|gb|OIO63147.1| (hypothetical protein AUJ83_01680 [Candidatus Woesearchaeota archaeon CG1_02_33_12])

HSP 1 Score: 195.282 bits (495), Expect = 3.266e-57
Identity = 104/266 (39.10%), Postives = 157/266 (59.02%), Query Frame = 0
Query:   74 FVDVHCHIIHEQFAGEEDAVAQRAKDKGLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAWRNPFPPPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQERVLRKLIVVAKKHDLPLILHTRKAELRTFEILQEMGVVKADFHCFCGKTKLGKRIAEAGYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEKNVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENFRRLM 339
             VDVH H+   +F  + D V +RA+  G++  + NGL P+SNR  L+L  ++   + PA G+YP D A  +   E             +++E+ FI++   + K+ A+GE GLD  YC    E   Q+ +  K+I ++KK + PLI+H+RKAE     IL+     K   HCF GK +L KR A  GYY S+P+ V RS  F+KLV+ V +++LLTETDSPY  P KN RNEP+ +   ++ +AE+K IS+ E  N+I  N++++ 
Sbjct:    3 LVDVHAHLDLNEFDSDLDEVIKRAETAGVKAIISNGLNPESNRKTLELSKKY-KIVKPAFGLYP-DDALKLTEKE-------------IESELNFIEK--NKDKIAAIGEVGLDYKYCKKKQEQELQKEIFLKIINLSKKINKPLIIHSRKAEQEIISILENSDAKKVVLHCFSGKLRLIKRAAGLGYYFSVPTNVVRSNQFQKLVEIVDINKLLTETDSPYLSPYKNKRNEPSFIIEAIKKIAEIKNISINETANNIFMNYQKIF 251          
BLAST of EWM24282.1 vs. NCBI_GenBank
Match: gi|1176152459|gb|OQX69993.1| (hypothetical protein B6A08_02175 [Sorangiineae bacterium NIC37A_2])

HSP 1 Score: 194.897 bits (494), Expect = 6.789e-57
Identity = 109/269 (40.52%), Postives = 157/269 (58.36%), Query Frame = 0
Query:   73 RFVDVHCHIIHEQFAGEEDAVAQRAKDKGLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAWRNPFPPPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQERVLRKLIVVAKKHDLPLILHTRKAELRTFEILQEMGVVKADFHCFCGKTKLGKRIAEAGYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEKNVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENFRRLMRK 341
            R  DVH H+   +F GE  AV +RAK+ G+   + NGL  + N  VL L  R  S + PALG+YP+DA    +       P         +A V +I    ++   +A+GE GLD ++  +   +A QE+V R L+ VA + D P+I+HTRKAE R FEIL E+GV + ++HC+  + KL ++IA+ G++LSIPS V RSE+F  +++ +P  QLL ETD PY  P    R+EP  V       +E+ G+ LEEA  +  ENF RL R+
Sbjct:    2 RLFDVHAHLTSPKFQGEVPAVLERAKEAGVTKIISNGLNRKDNEKVLALA-RESSLVRPALGLYPVDAVLPEMTEAGVDYPREDTQIEPAEAVVAWIAENASDA--IAIGEIGLDHHWVPEQF-WARQEQVFRSLVQVALELDKPIIIHTRKAEARCFEILVELGVKRVNWHCYSSRLKLARQIADYGHFLSIPSNVRRSETFTGMLRTLPRSQLLLETDCPYLAPVPGERSEPMHVRGTATFASELWGVPLEEAARTFEENFERLFRE 266          
BLAST of EWM24282.1 vs. NCBI_GenBank
Match: gi|735015831|gb|KHO49852.1| (TatD DNase family protein [archaeon GW2011_AR9])

HSP 1 Score: 183.726 bits (465), Expect = 1.246e-52
Identity = 107/272 (39.34%), Postives = 159/272 (58.46%), Query Frame = 0
Query:   74 FVDVHCHIIHEQFAGEEDAVAQRAKDKGLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAWRNPFPPPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQERVLRKLIVVAKKHDLPLILHTRKAELRTFEIL------QEMGVVKADFHCFCGKTKLGKRIAEAGYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEKNVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENFRRLM 339
             +DVHCH+ H  F  + D+V  RAK  G+   +V+G+ P++NR VL+   R+P  L  +LGIYP+DA    + P+    PF    K +++ E  FI++   + KV A+GE G+D ++      + EQ    RK+I  AKK   PL++H+RKAE    EIL       ++ VV    HCF GK    K+ A  G+Y SIP+ V +S SF+ L+K V ++QLLTETDSP+  P    R+EPA V   ++ +A++K I+ EEA   + EN+ R+ 
Sbjct:    3 LIDVHCHLNHVLFKPDLDSVIARAKQAGVVRILVSGVNPEANREVLEYVKRYPDILRASLGIYPIDALG--LTPDEVGLPF-HKGKINLEEEFAFIEK--NQDKVTAIGEVGMDFHWAEKEKTYLEQADNFRKIIRFAKKIKKPLVIHSRKAEAECIEILSQEIQHHQVAVVN---HCFSGKKNTIKQAASLGHYFSIPANVIKSSSFQTLIKLVDINQLLTETDSPWLTPYGQ-RSEPAYVLESIKMIAQIKEITPEEAATKVWENYARVF 265          
BLAST of EWM24282.1 vs. NCBI_GenBank
Match: gi|1084210788|gb|OGM02083.1| (hypothetical protein A3K72_00015 [Candidatus Woesearchaeota archaeon RBG_13_36_6])

HSP 1 Score: 183.341 bits (464), Expect = 1.475e-52
Identity = 100/269 (37.17%), Postives = 160/269 (59.48%), Query Frame = 0
Query:   74 FVDVHCHIIHEQFAGEEDAVAQRAKDKGLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAWRNPFP-PPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQERVLRKLIVVAKKHDLPLILHTRKAELRTFEILQEMGVVKADFHCFCGKTKLGKRIAEAGYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEKNVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENFRRLMRK 341
             VDVH H+ H  F  + D V QRAK  G++  + NG+ P++NR+ L++  ++   +  ALGIYP+DA    +  E+     P  P+ FDVD E++FI+    + K+VAV E GLD  Y        EQ++V  KL+ +A+K + P+++H+R AE    EILQ   + K   HCF GK  L K+  + G++ SIP+ + RS+ F+K+ +   L Q+ TETD+PY  P +  RNE + +   ++ +A++K ++ EE  N+I  N++R+  K
Sbjct:    3 LVDVHAHLDHIDFKEDLDLVIQRAKQAGVKAIISNGINPETNRSTLEIAKKY-DIVKAALGIYPIDA----LQKESEIGECPLKPNVFDVDKEIKFIE--ANKNKIVAVAEIGLDFKYSKKK---DEQKQVFEKLLALAEKLNKPVMVHSRGAEQDCVEILQTTRLKKIILHCFSGKLTLVKKGLDNGWFFSIPTNIVRSQQFQKIAEVSSLSQIFTETDAPYLSPFRGTRNESSFIIETIKKIAKIKNLTQEEVANNIYMNYQRVFGK 261          
BLAST of EWM24282.1 vs. NCBI_GenBank
Match: gi|1083785334|gb|OGI64482.1| (hypothetical protein A2642_01810 [Candidatus Nomurabacteria bacterium RIFCSPHIGHO2_01_FULL_39_10])

HSP 1 Score: 178.333 bits (451), Expect = 1.520e-50
Identity = 97/268 (36.19%), Postives = 154/268 (57.46%), Query Frame = 0
Query:   74 FVDVHCHIIHEQFAGEEDAVAQRAKDKGLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAWRNPFPPPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQERVLRKLIVVAKKHDLPLILHTRKAELRTFEIL------QEMGVVKADFHCFCGKTKLGKRIAEAGYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEKNVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENF 335
             +D HCH+ H  +  + + V +RAK   ++  +V+G+ P SNR VLKL  +HP  L  +LGIYP+DA               P    D+DAE++FI++   + ++ A+GE G+D ++      + +Q    RK+I  AK+   P+++H+RKAE    +IL      +E+ +V+   HCF GK  L K+  E G+Y SIP+ + +S+ F+ L+K VPL Q+ TETD P+  P K+ +NEPA V   ++ +AE+K +S       I EN+
Sbjct:    3 LIDDHCHLTHVLYKDDLNDVLKRAKAANIKRILVSGVNPPSNREVLKLVQQHPGILRASLGIYPIDALGLAEGDSGLPLQKTP---IDIDAELQFINQH--KDQITAIGEIGMDFHWADKETTYQQQSDNFRKIIRFAKQIKKPIVIHSRKAEAECIQILAEEIPNKEIPIVQ---HCFSGKKSLIKQAQELGHYFSIPTNLIKSDQFQTLIKMVPLQQITTETDGPWLSPYKDQKNEPAFVLDAIKKIAELKQLSETAVAQQIWENY 262          
BLAST of EWM24282.1 vs. NCBI_GenBank
Match: gi|735011928|gb|KHO46008.1| (TatD DNase family protein [archaeon GW2011_AR4])

HSP 1 Score: 176.407 bits (446), Expect = 6.315e-50
Identity = 97/266 (36.47%), Postives = 156/266 (58.65%), Query Frame = 0
Query:   74 FVDVHCHIIHEQFAGEEDAVAQRAKDKGLEYCVVNGLEPQSNRAVLKLCDRHPSSLLPALGIYPLDAACNVINPEAWRNPFPPPDKFDVDAEVEFIDRMCAEGKVVAVGECGLDAYYCTDPVEFAEQERVLRKLIVVAKKHDLPLILHTRKAELRTFEILQEMGVVKADFHCFCGKTKLGKRIAEAGYYLSIPSVVARSESFKKLVKEVPLDQLLTETDSPYQGPEKNVRNEPATVPIGVQAMAEVKGISLEEAMNSIRENFRRLM 339
             +D+H H+  EQF  + D V QRA+D G+   + NGL+ Q+NR+VL L  ++   + PALG+YP D A  ++  + +              E++FI++   + K++A+GE GLD  +  D ++  EQ+     +I +A + + PLI+H+R+AE    ++L +    K  FHCF G  +  K I   G+Y SIP ++ R++SF+ LV+    D+LLTETDSPY    K  RNEPA +P+ ++ +AE++G+S  E  N I +N+  L 
Sbjct:    3 LLDIHAHLDDEQFKPDLDEVLQRARDAGVTTIITNGLDIQTNRSVLLLAKKY-HLIKPALGLYP-DEAIRLVPSQLYE-------------EIDFIEK--NKNKIIAIGEVGLDGKHHKDRLD--EQKEAFSLMIDLAMRINKPLIVHSRQAEQECIDLLTKKAPKKVVFHCFGGSLEQAKDIKRKGWYFSIPPIILRNQSFQDLVQLAGPDRLLTETDSPYLSSVKGKRNEPAEIPLVIKKIAELEGLSAGEVENIIYKNYSTLF 249          
The following BLAST results are available for this feature:
BLAST of EWM24282.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105673|gb|EWM24282.1|0.000e+0100.00hydrolase [Nannochloropsis gaditana][more]
gi|1182762266|emb|SMF54886.1|2.202e-7245.32TatD DNase family protein [Pseudobacteriovorax ant... [more]
gi|1101215908|gb|OIP64910.1|6.785e-6141.20hypothetical protein AUK30_05710 [Nitrospirae bact... [more]
gi|735012722|gb|KHO46788.1|2.435e-5739.63TatD DNase family protein [archaeon GW2011_AR3][more]
gi|1101104468|gb|OIO63147.1|3.266e-5739.10hypothetical protein AUJ83_01680 [Candidatus Woese... [more]
gi|1176152459|gb|OQX69993.1|6.789e-5740.52hypothetical protein B6A08_02175 [Sorangiineae bac... [more]
gi|735015831|gb|KHO49852.1|1.246e-5239.34TatD DNase family protein [archaeon GW2011_AR9][more]
gi|1084210788|gb|OGM02083.1|1.475e-5237.17hypothetical protein A3K72_00015 [Candidatus Woese... [more]
gi|1083785334|gb|OGI64482.1|1.520e-5036.19hypothetical protein A2642_01810 [Candidatus Nomur... [more]
gi|735011928|gb|KHO46008.1|6.315e-5036.47TatD DNase family protein [archaeon GW2011_AR4][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6411rna6411Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications