rna6410, rna6410 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6410
Unique Name	rna6410
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1728
Alignment location	CM002468.1:455061..457959 +

Link to JBrowse

Properties


Property Name	Value
Product	major facilitator superfamily mfs_1
Orig transcript id	gnl\|cribi\|Naga_100020g70.5391.mrna
Orig protein id	gnl\|cribi\|Naga_100020g70.5391
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:455061..457959 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g70	gene6194	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6410	rna6410-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24258.1	cds6394	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:455061..457959+
coding sequence from alignment at CM002468.1:455061..457959+

mRNA sequence

>rna6410 ID=rna6410|Name=rna6410|organism=Nannochloropsis gaditana|type=mRNA|length=1728bp
AAAATATTCCGTCCGAAAATCCCCCGTGCGCAAGTATCCTCCCTTCGAAG
CGAGCCGCCTCTCTCTGCGACGTCATGCCTCGCCCGCTCGCCCAGTCCAT
GGACCATGGCCCCTGTGCAACCTGTCGTGCATCACAGTCGCGGACCAGAA
ATTTCCCCCTGTCACCCCTCGCACGCCCTGCCCTCCTTCAAGTGACGACA
GTTTTCGACATGGTCGGCCGCTCCACTGTGCCTGCTCGAATTTTGGAAAG
CCGTGGGGGGCAGAGGAGACGACGATACGCAGGGCGGAAAACATTTATGT
GCCTTCAACTTGGACGATTAAACACATTTTTCTTTGGGACCGCCGTATCG
CGCCTCTTCGTCTCGGCACTAGTGTACCTTGTCTTTGCTGGGTCCATTGT
ACAAGCATTCTTGGTGCCGCGTCTGCCTTGTCCATTTCACTCGCTTTCCG
CGCCGCTTCTGCGTGACAAAATTTCCGCGCCATCATCTGCCTTTGTCCCG
AGATTGCCGTATGCAGCAGACTATACATATTCAATGCACAGCAGCGTGCG
TTGGTCCAAGCCTCAAAGATCGCAAGACGACGTGCGGTACTCAACAAAAC
AAAATGTGCTCGAAGATTTCGAACAACGATTGAGGGGCAGCAACGCACAA
AGTGAGGAATCTCCAGCTTACGTAGCTGAAACACCCAGAGGGAAGCAACG
CATTCCACTTCCTCCAGGTCCAAATCGGTTGCTCATCCTCTTCAGCATTA
TCATGGCAGCAGCTCTTGCGGCTCTGGGTGTGACAGTTGGTCAGTTTGTG
GACGTCTCCCCCCTGGCAACACTCAGCCTCCAACCCGCGATGTTCCTCTT
GGGCGCCGTCTTGGCTATGCCTCTCTTTGGTATCGACGCGCTGCTGCAGA
ATGTGCAAGAAGACACGGCCAGTGAGGTCTACAGCCTCTCCATCTTTGGG
ACGACGACACCCGTACTCTCTGTCGTGGCTCTCGCCGCGGCCGTGACACT
GGCGACCGGCGTGGGAGAGGAAACTCTTTTTCGGGGCTTGATCCAGCAAG
GCATCGCCTCCCTTGCGGGCCCCTGGGTAGGTCTTGTGGTGGGTGCAGGA
GTCTTTGGTCTGGCACACAAGATGGGGCCGTCAGACGTCTTGTTCATATC
TCTGTCGGGGGCCTACATGGGCTTGGTGTTCCTGCAGTACGGCGACTTGA
CCGTTCCAATAGCCACGCACGCCACCTATGACTTCTTGATCTTGTGCGGG
GCATACTTCCGGGCAAAAAAGCGCATGTCTCGGTCCTCTGTCAATTTAAA
GGAGCATCAGGGCAAAGGACGGGGGAGGTAGAAGGCATGGCTGGGATGCA
CAGGAGGATGATAGTCTGTGGTGAACTTTACTTGCTACGAATGAAAGCGT
TTGTTTTCTAGGAAAGCATACTGTGTTCGAATCGGACCATCTGTTCACCT
TTACAATGTCTTTCCTCTTGGTGTGCGCCTCTGCATGGCGAGATGTATAC
CAGGTTTGAAATTGTCGTCATGTACAGGAGTGTGAAAATTTGTGTCGAAG
AATCATTACAGTGTGAGGGAAGGAAATATGAGGTAAAGACGCTCAGTCAT
ACAGAGAGGACAGACCACACTTGCAAGTTCACTTCAATAAGTGCAGATAA
GCGAGTATGATCCTATCAGTTCTGCGTTGTAATGCTGTCGATCGAGCAGG
AAAAATGATACAAAAACCAAGTCCGTTT

protein sequence of rna6410

>rna6410-protein ID=rna6410-protein|Name=rna6410|organism=Nannochloropsis gaditana|type=polypeptide|length=682bp
MNASLRQRPSRRREEGVSPLVAHYVSESASCKDTTSPSQSTVDRKNSNTF
GKVDVIEDSPPLLRSPRSHSDGGENVGGTAYLYGGGMKRSRSFLDLINEK
IEQEPSTNPDTVSLYLKFIVALDFLAVATVVPLLPQYLARTGCCNEQLAF
ISSAYSLAQLVGGVLLGWVSDGIMTRKTILMTSLLGSAAAYGMVGASSSR
PLLILSRIVVGLVKQTMTMTTALISDLPLDRSRRTKHMSHLTAAVTVSWI
LGPALGGYLFWLSPRLPPLVAAFIFTLAALVCLIGVPNHPDRGPPGYSPL
STSISSPDLLGMIGQGNGSQYKPKSKSLHAFLFTLKNNFREAFNDPTIIR
IVSIRLLYSFTIISLMPTNFIGYLEARYGLKSHEVAYLHSYRATLSFLAQ
TFLVSAVVRHHTFSEEATARVAIVLGVFLKYSEVLNRDRLVFLFLTTPAI
VAIFSLFDCSLQGIYTDSIPAGHRGAALGSMSALQSLVKIAAPLYGGEIF
QRVGHERRPEIIFFHYIVLATVVWLVFPPGRHRPKRPPLAPSASAGSLSQ
IVEGKEEGSSGRSKGSSCRTDGKRDSSTNDREGKHLHAQDMSVPTPYANL
SSVSVSESAPFRGPAAAAEKAAAAPAVPSAALTDMGNPQAKNREEGSGVI
RRGGMTSLPSSERLHPIRGRFDRGSRVRIGQI

mRNA from alignment at CM002468.1:455061..457959+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6410 ID=rna6410|Name=rna6410|organism=Nannochloropsis gaditana|type=mRNA|length=2899bp|location=Sequence derived from alignment at CM002468.1:455061..457959+ (Nannochloropsis gaditana)
TATCCAGACAGGCTCATCAACGTATAGCTGGGAGAAGTAATTGAGTCGGA
GGCCGGTGAGAGACATTCATTATCCTCATGAATGCGTCGCTGCGACAACG
CCCCTCGCGccgacgggaggagggcgtgtcCCCTCTGGTAGCACACTATG
TCTCGGAGTCTGCGAGTTGCAAAGGTGCGTGTAAAGTAAAATAGAATCTT
GTAGGATGCTCATATGATGAGGTAGTCCGAGACGATTTCAATATCATTTT
TCAGCCCGTATccatctttccttcttcgcaTTGGTCACATCCCAAACCAG
CGAGCACAACTCCGAGACCTTTGTTCGTATTCCAAATTATTAGCGGACAA
CTGTGCTTCAATTAAACCACTTTCTTTTCATCATGAGCAGCATGCTCAAA
TAACGAGCGCTGGCAGAAGTTTGTCTTGTCTCTCAACTCTTCACGCTGCT
TTCTGTAGAGCAAGCACGGCACATCAATTCACGCTGTTACATATATTCCG
CACACAGATACGACTTCTCCTTCGCAAAGCACCGTTGACAGAAAAAATAG
TAATACGTTTGGCAAAGTTGATGTCATAGAGGACTCTCCACCATTACTGA
GGAGTCCACGATCTCACAGCGACGGCGGCGAAAATGTCGGAGGCACCGCT
TACCTGTACGGTGGTGGTATGAAAAGGTCTCGCTCGTTCCTGGACCTGAT
TAATGAAAAAATCGAGCAAGAGCCTTCCACGAATCCAGACACGGTCTCTC
TTTATCTCAAATTTATCGTCGCGCTCGATTTCCTGGCAGTAGCCACGGTC
GTGCCGCTGCTTCCGCAGTACCTTGCTCGCACCGGCTGTTGCAACGAGCA
GCTggccttcatctcctccgcctacAGCCTTGCGCAGCTTGTGGGCGGCG
TCCTCTTAGGCTGGGTCTCTGACGGTATCATGACTCGGAAGACGATACTT
ATGACCTCGCTGCTCGGGTCCGCCGCCGCCTACGGCATGGtgggcgcctc
ctcctcgcgccctctcctcatcctctctcgCATTGTCGTCGGCCTCGTCA
AGCAGACGATGACCATGACCACGGCCCTCATCTCGGACCTGCCGCTCGAT
CGATCGCGTCGCACGAAGCACATGAGCCACCTGACCGCCGCTGTGACCGT
GTCCTGGATCCTGGGGCCTGCCCTTGGGGGCTATCTCTTCTGGCTCTCCC
CGCGCCTCCCACCActcgtcgccgccttcaTATTCACCCTGGCAGCCTTA
GTCTGCCTTATAGGCGTGCCCAACCACCCCGACCGCGGCCCTCCGGGCta
ctcccctctctccacctccatctcctccccagACCTCCTAGGTATGATAG
GCCAGGGTAACGGGAGTCAGTACAAGCCCAAGTCCAAAAgcctccacgcc
ttcctcttcacatTGAAGAATAACTTCCGGGAGGCTTTCAACGACCCCAC
CATCATCCGCATCGTCAGCATCCGCCTTCTGTATAGCTTCACCATCATCT
CGCTCATGCCCACAAATTTTATCGGATACCTGGAGGCCCGGTACGGACTC
AAATCCCACGAGGTCGCATACCTCCACTCCTATCgcgccaccctctcctt
tctggCGCAGACCTTTCTTGTCAGCGCGGTGGTGCGGCACCATACGTTCT
CAGAGgaggccacggccagggtCGCGATCGTCCTGGGCGTGTTCCTCAAG
TACTCCGAGGTCCTAAATCGGGACAGGctggtcttcctctttctcaccAC
TCCGGCGATCGTGGCCATTTTCTCGCTCTTTGACTGCTCCTTGCAGGGCA
TCTACACGGACAGTATCCCTGCGGGACACCGCGGCGCAGCCTTGGGCTCC
ATGAGTGCGCTGCAGTCGCTCGTCAAGATCGCGGCCCCCCTCTACGGCGG
TGAGATTTTCCAGCGTGTGGGCCACGAGCGTCGGCCTGAGatcatcttct
tccactACATAGTGCTTGCCACAGTGGTGTggcttgtctttcctccAGGG
CGGCATCGACCGAAACGCCCGCCCTTAGCCCCGTCGGCCTCGGCGGGGTC
GCTGTCACAGatcgtggaagggaaggaggagggaagttcTGGGCGTAGCA
AGGGAAGCTCCTGCAGGACCGATGGCAAGCGTGACAGCAGTACAAATGat
agggaaggaaagcactTACATGCCCAAGACATGAGCGTGCCCACTCCCTA
CGCAAATCTTTCCTCGGTTAGTGTCAGCGAAAGTGCGCCTTTCCGTGGTC
CCGCTGCCGCAGCTGAGAAAGCTGCCGCCGCACCGGCCGTCCCGTCGGCC
GCACTGACAGATATGGGCAATCCCCAGGCAAAGaatagggaggagggatc
agGGGTCATAAGGCGTGGGGGAATGACAAGCTTGCCCTCCTCAGAGAGAT
TGCATCCCATTCGAGGTCGATTTGACCGCGGAAGTCGGGTTCGCATCGGC
CAAATATAGATAGCAAATGGTAAAGATGGAAATGACAGCATTAAGTCACC
ACAGTCATAGGGCATGAATTGTTTGAAATGGTAAAAGGAGAACCCAGACT
CCCATCTTTCTGACCTTTGTGTAAGTCGTGGGCTTTAAGATAGAGTTGAT
TAGACATAACAGATCAAGGCACGTGTAAGTGATTTTGACTGAGCACACTT
TCAATGTATCTACTAGTCCTGAGAAAATGCTGTGGGTTGATCGGCTTGAC
GTTTATTGTTTGCTTCTTCAGGAATCGGGACCTGCAGGGAGCGGGAAACT
TATCGCTCCTGTTGAATCAAGAAGCACGATCGGACTTCCGACGCGACGTT
TTTCCTTTCAAAAAACAAAGATTGTTCTTAGATTCAAGCAATGCGATAGA
CAAAAAGTAGCGGGAGCTCGATATTCTTTCCGCTCGCGAGATAACTTTG

Coding sequence (CDS) from alignment at CM002468.1:455061..457959+

>rna6410 ID=rna6410|Name=rna6410|organism=Nannochloropsis gaditana|type=CDS|length=4098bp|location=Sequence derived from alignment at CM002468.1:455061..457959+ (Nannochloropsis gaditana)
ATGAATGCGTCGCTGCGACAACGCCCCTCGCGccgacgggaggagggcgt
gtcCCCTCTGGTAGCACACTATGTCTCGGAGTCTGCGAGTTGCAAAGATA
CGACTTCTCCTTCGCAAAGCACCGTTGACAGAAAAAATAGTAATACGTTT
GGCAAAGTTGATGTCATAGAGGACTCTCCACCATTACTGAGGAGTCCACG
ATCTCACAGCGACGGCGGCGAAAATGTCGGAGGCACCGCTTACCTGTACG
GTGGTGGTATGAAAAGGTCTCGCTCGTTCCTGGACCTGATTAATGAAAAA
ATCGAGCAAGAGCCTTCCACGAATCCAGACACGGTCTCTCTTTATCTCAA
ATTTATCGTCGCGCTCGATTTCCTGGCAGTAGCCACGGTCGTGCCGCTGC
TTCCGCAGTACCTTGCTCGCACCGGCTGTTGCAACGAGCAGCTggccttc
atctcctccgcctacAGCCTTGCGCAGCTTGTGGGCGGCGTCCTCTTAGG
CTGGGTCTCTGACGGTATCATGACTCGGAAGACGATACTTATGACCTCGC
TGCTCGGGTCCGCCGCCGCCTACGGCATGGtgggcgcctcctcctcgcgc
cctctcctcatcctctctcgCATTGTCGTCGGCCTCGTCAAGCAGACGAT
GACCATGACCACGGCCCTCATCTCGGACCTGCCGCTCGATCGATCGCGTC
GCACGAAGCACATGAGCCACCTGACCGCCGCTGTGACCGTGTCCTGGATC
CTGGGGCCTGCCCTTGGGGGCTATCTCTTCTGGCTCTCCCCGCGCCTCCC
ACCActcgtcgccgccttcaTATTCACCCTGGCAGCCTTAGTCTGCCTTA
TAGGCGTGCCCAACCACCCCGACCGCGGCCCTCCGGGCtactcccctctc
tccacctccatctcctccccagACCTCCTAGGTATGATAGGCCAGGGTAA
CGGGAGTCAGTACAAGCCCAAGTCCAAAAgcctccacgccttcctcttca
catTGAAGAATAACTTCCGGGAGGCTTTCAACGACCCCACCATCATCCGC
ATCGTCAGCATCCGCCTTCTGTATAGCTTCACCATCATCTCGCTCATGCC
CACAAATTTTATCGGATACCTGGAGGCCCGGTACGGACTCAAATCCCACG
AGGTCGCATACCTCCACTCCTATCgcgccaccctctcctttctggCGCAG
ACCTTTCTTGTCAGCGCGGTGGTGCGGCACCATACGTTCTCAGAGgaggc
cacggccagggtCGCGATCGTCCTGGGCGTGTTCCTCAAGTACTCCGAGG
TCCTAAATCGGGACAGGctggtcttcctctttctcaccACTCCGGCGATC
GTGGCCATTTTCTCGCTCTTTGACTGCTCCTTGCAGGGCATCTACACGGA
CAGTATCCCTGCGGGACACCGCGGCGCAGCCTTGGGCTCCATGAGTGCGC
TGCAGTCGCTCGTCAAGATCGCGGCCCCCCTCTACGGCGGTGAGATTTTC
CAGCGTGTGGGCCACGAGCGTCGGCCTGAGatcatcttcttccactACAT
AGTGCTTGCCACAGTGGTGTggcttgtctttcctccAGGGCGGCATCGAC
CGAAACGCCCGCCCTTAGCCCCGTCGGCCTCGGCGGGGTCGCTGTCACAG
atcgtggaagggaaggaggagggaagttcTGGGCGTAGCAAGGGAAGCTC
CTGCAGGACCGATGGCAAGCGTGACAGCAGTACAAATGatagggaaggaa
agcactTACATGCCCAAGACATGAGCGTGCCCACTCCCTACGCAAATCTT
TCCTCGGTTAGTGTCAGCGAAAGTGCGCCTTTCCGTGGTCCCGCTGCCGC
AGCTGAGAAAGCTGCCGCCGCACCGGCCGTCCCGTCGGCCGCACTGACAG
ATATGGGCAATCCCCAGGCAAAGaatagggaggagggatcagGGGTCATA
AGGCGTGGGGGAATGACAAGCTTGCCCTCCTCAGAGAGATTGCATCCCAT
TCGAGGTCGATTTGACCGCGGAAGTCGGGTTCGCATCGGCCAAATATAGA
TGAATGCGTCGCTGCGACAACGCCCCTCGCGccgacgggaggagggcgtg
tcCCCTCTGGTAGCACACTATGTCTCGGAGTCTGCGAGTTGCAAAGATAC
GACTTCTCCTTCGCAAAGCACCGTTGACAGAAAAAATAGTAATACGTTTG
GCAAAGTTGATGTCATAGAGGACTCTCCACCATTACTGAGGAGTCCACGA
TCTCACAGCGACGGCGGCGAAAATGTCGGAGGCACCGCTTACCTGTACGG
TGGTGGTATGAAAAGGTCTCGCTCGTTCCTGGACCTGATTAATGAAAAAA
TCGAGCAAGAGCCTTCCACGAATCCAGACACGGTCTCTCTTTATCTCAAA
TTTATCGTCGCGCTCGATTTCCTGGCAGTAGCCACGGTCGTGCCGCTGCT
TCCGCAGTACCTTGCTCGCACCGGCTGTTGCAACGAGCAGCTggccttca
tctcctccgcctacAGCCTTGCGCAGCTTGTGGGCGGCGTCCTCTTAGGC
TGGGTCTCTGACGGTATCATGACTCGGAAGACGATACTTATGACCTCGCT
GCTCGGGTCCGCCGCCGCCTACGGCATGGtgggcgcctcctcctcgcgcc
ctctcctcatcctctctcgCATTGTCGTCGGCCTCGTCAAGCAGACGATG
ACCATGACCACGGCCCTCATCTCGGACCTGCCGCTCGATCGATCGCGTCG
CACGAAGCACATGAGCCACCTGACCGCCGCTGTGACCGTGTCCTGGATCC
TGGGGCCTGCCCTTGGGGGCTATCTCTTCTGGCTCTCCCCGCGCCTCCCA
CCActcgtcgccgccttcaTATTCACCCTGGCAGCCTTAGTCTGCCTTAT
AGGCGTGCCCAACCACCCCGACCGCGGCCCTCCGGGCtactcccctctct
ccacctccatctcctccccagACCTCCTAGGTATGATAGGCCAGGGTAAC
GGGAGTCAGTACAAGCCCAAGTCCAAAAgcctccacgccttcctcttcac
atTGAAGAATAACTTCCGGGAGGCTTTCAACGACCCCACCATCATCCGCA
TCGTCAGCATCCGCCTTCTGTATAGCTTCACCATCATCTCGCTCATGCCC
ACAAATTTTATCGGATACCTGGAGGCCCGGTACGGACTCAAATCCCACGA
GGTCGCATACCTCCACTCCTATCgcgccaccctctcctttctggCGCAGA
CCTTTCTTGTCAGCGCGGTGGTGCGGCACCATACGTTCTCAGAGgaggcc
acggccagggtCGCGATCGTCCTGGGCGTGTTCCTCAAGTACTCCGAGGT
CCTAAATCGGGACAGGctggtcttcctctttctcaccACTCCGGCGATCG
TGGCCATTTTCTCGCTCTTTGACTGCTCCTTGCAGGGCATCTACACGGAC
AGTATCCCTGCGGGACACCGCGGCGCAGCCTTGGGCTCCATGAGTGCGCT
GCAGTCGCTCGTCAAGATCGCGGCCCCCCTCTACGGCGGTGAGATTTTCC
AGCGTGTGGGCCACGAGCGTCGGCCTGAGatcatcttcttccactACATA
GTGCTTGCCACAGTGGTGTggcttgtctttcctccAGGGCGGCATCGACC
GAAACGCCCGCCCTTAGCCCCGTCGGCCTCGGCGGGGTCGCTGTCACAGa
tcgtggaagggaaggaggagggaagttcTGGGCGTAGCAAGGGAAGCTCC
TGCAGGACCGATGGCAAGCGTGACAGCAGTACAAATGatagggaaggaaa
gcactTACATGCCCAAGACATGAGCGTGCCCACTCCCTACGCAAATCTTT
CCTCGGTTAGTGTCAGCGAAAGTGCGCCTTTCCGTGGTCCCGCTGCCGCA
GCTGAGAAAGCTGCCGCCGCACCGGCCGTCCCGTCGGCCGCACTGACAGA
TATGGGCAATCCCCAGGCAAAGaatagggaggagggatcagGGGTCATAA
GGCGTGGGGGAATGACAAGCTTGCCCTCCTCAGAGAGATTGCATCCCATT
CGAGGTCGATTTGACCGCGGAAGTCGGGTTCGCATCGGCCAAATATAG

Synonyms

Publications