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Properties
| Property Name | Value |
|---|
| Product | abortive infection protein |
| Orig transcript id | gnl|cribi|Naga_100020g71.5402.mrna |
| Orig protein id | gnl|cribi|Naga_100020g71.5402 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:452989..455033 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6409 ID=rna6409|Name=rna6409|organism=Nannochloropsis gaditana|type=mRNA|length=2868bp
GACGTGCAGTAGCTTTGCAATCAACGTGCCTTTCATGCAAATCTAAACAA
CATGTATCCTCAATGATGTAGGGATCCCACGGTTGACAGCCACACAGATC
TCGGCTTCTGTCCGCTTGGGTGCCGTGGGTGCGAGTGGGGGAGGCCAGGT
AAGGGGCATCCGCGTTGAACATAGGCGGCATCCAGCAGCAAGGTAGCAGC
AGCGTCGCCAGCCATTTTATACATGCGGACAATAAGTCTTTGGTATGCAG
GTGTGTTGGGCATAGCGGGTTGGAGCCCACAACAAATGTCTGGGCTAGCA
GCATTTGTTTTCAGTTCAGCAAACCAGTGTTGGAGAACAGCAGCGCGACA
AGTCACGCATGGCGCAACATTTGCGCCCGCACGGAGTTCCCGCCAGCCGA
TATCATTTCAGGGCCTCCCGGGGGCCTCGTCTCTTAGGAGCAGGAGCGTG
TTATTTGTAAAGCCGTTATACTCGGTGGTGGAAGGCAGGGGTGAGCGGCT
GAAAACAGGGCGTGGTGACGAGGAGAGAGGAGGGGGAATGTCTGCAGCGC
CAGTCGTTGTGGGTGTTCCCAGCCCTGGCACGGCAAAGGAATCAGGCGTG
TCCAAGGAGAGCGAGGTAGCCAATAGTAACTTATCGGCCTCTGACCAGGA
AGAGGACTCCGGAGGGGGCGGTGAGGGCCGGGAAGTGGAGGAGAAGACGG
GGTCGGGAGAAAACAAGGACGGGGAGAGCCCGGATCTCTCAGCGGAACTG
GCGCGTCTGGAGGAGCTCGCAGGCACTATCTTTCAGATGGCCGGCCGTGA
GTTTAAGATCACCTCGTATGTGGAGCTCTCACGGGTTTTGTTCGAGGACC
TGAAGCTGCCCGTGGTGAAGCAACCCAGCAATAAGGTCTTGGGGGGGTAC
TACTCCACCTCCAACGCGGTCCTAAACGAGCTCTCTGCCATGGGATACGA
GCTCCCCGCCAAGGTACTAGACTACCGAGCGCTTTTATATCTGATTCGGA
GCAAGCAAGGGAAGAAGAAAAAGAAGAAGGGCGCCGGGGAAGGGAAAGGC
CAGGGGGGCGCTTCGGGCGAAGAGGCAAGCTCGGAGGGCGGAGGCCGGGG
GGAACGGATGTCTCCGGAGGAGAAGTTGATGATGAGCATGCTCAAGGAAG
ACTCAGGGGTCGATGCGCTGGACCGAACTATGGTAAGAGTCGGTGTGGAC
ATCGAGAAGGTGATGGAGCGAGTGCAGACGATGAGCACCGGGGGGGGGCT
GCGAACCGCGGGGGGCGCCACCGAATTTAAGGAAGAGAGCTTCGTGCCGG
AGGAAGGGGGCTTCGAAGAGACAGACCTGGCCGCCCCGATCCCGATGCTG
ATGCAGGCGGAGGAGGAGGAAGCTGAGAACTTGGAGGGCGGGTCCCCCGT
CTCCCTGTACGACAAAGGGTGGGGGGCGGCCAACAACCTGGTCCTCGTGG
ACGCGGCCAGCATCCTTTACCGCACCTACCACGCCATGCCCCGGCTGACG
GGGCCCGACGGCACTCCCGTTAATGCGGTCCTGGGTTTCTGCAATGTCCT
GAACAAGCTTCTGCTTCCGGCCCTGGCGCGGAGCAGGGTGCGGCCCTACG
TGCTGGTCGTCTTCGACGGGCACGCGCCGGCCTACCGGCAGACGGCCCTC
TACCCCAGCTATAAAGCCAATCGTGCCGCCACGCCCGAGGAGTTGGTGGC
CCAATTTCCCCTCGCCCAGGAAGCGGCGATGGCGTTCGGGGCCATCAATG
TGACGGCGCCGGAGGGGCTGGAGGCGGACGACGTGATCGCGACCTTTGCC
CAGGTGGCGGTGGAGCAGGTCTCCGACCTGAAGGTGACTATCGTCTCGTC
GGACAAGGACTTCTTGCAGCTGGTGGGCGAGGATATCACAGTTTTTGACC
CCTTCAACATGGTGAGGCTGGGGCCCAACGAGGTGTTCGAAAAGTACGGC
TTGGAGCCTGCTCAGCTGCTCGATTATTTCGCCATGGTGGGCGATGCCGC
AGACAATGTCCCGGGCATACCAGGCATCGGGCCCAAGACGGCGCAGGAGC
TCTTGGAGGAGTTTGAGAGCTTCGAGGAACTTTGGGAGTTCAAGGACGAG
GTCGAGTCGCCACGGCTTCGCAAGATCGTGGAGGATAACGTGGAAAAGTT
CTTGCTGTCCCGGAGGCTCATAAGACTGAAGAAGCTTTTTGAACCTCCCT
CCATGACGATGATGCCCAAGGCCCGTTTTTCTGAACAAAGGCTGACGGAC
TTCTGCACGCGCTTCGGGTTCAAGACCCTGGCCCTCCGCGTGAAGAGCAC
TTTAGCCCGGGTTGAGGCAGCGAAGGATGCGGAGGCCGTGCAGGACGGGA
ACGGTGGAAGGGAAGGGGGTGGGGGCCACTCCTTCTTCTCCTAATGGATT
AGAGCGACATCACGGTCTGCAGCAACTCATCCTAGAACCCCGATACCCGA
TGTAGAGAGTCATGAAATAAATGACATGCAAATTAATGGCGAAATGTCGT
GTTGAACACGCGCACTTGCAGGCTGCAGAGAGCCGCCCTTGTATGAGTAG
ACCTCAGAAACATGAACGGAAAAAGGAATTAGATGAGGAGCTTGGATCGA
AAAGTCAGCGTCAAGCAATGAGTCGATGAAGTAAGAGTGATAGGATCTTG
CTCTCGAGTTGGCTTATCTCTCCGGAGGCGAGACCTGGATCCATGTGAGT
GGCGTGGCTGGGAGGATGTGCGAAGACAGAGGATTGCTTGGCCCCGGGAG
GATGTCTCGAGAATGCACGGAGGGGGATGTCCGGGTTTAATGCCTGTGCT
GCAAACGATGAACAGACGATCCTTAAGTCTCTATGAAAAAAAAAATGCAA
TAATTTACAAACGGACTT back to topprotein sequence of rna6409 >rna6409-protein ID=rna6409-protein|Name=rna6409|organism=Nannochloropsis gaditana|type=polypeptide|length=418bp
MPRPLAQSMDHGPCATCRASQSRTRNFPLSPLARPALLQVTTVFDMVGRS
TVPARILESRGGQRRRRYAGRKTFMCLQLGRLNTFFFGTAVSRLFVSALV
YLVFAGSIVQAFLVPRLPCPFHSLSAPLLRDKISAPSSAFVPRLPYAADY
TYSMHSSVRWSKPQRSQDDVRYSTKQNVLEDFEQRLRGSNAQSEESPAYV
AETPRGKQRIPLPPGPNRLLILFSIIMAAALAALGVTVGQFVDVSPLATL
SLQPAMFLLGAVLAMPLFGIDALLQNVQEDTASEVYSLSIFGTTTPVLSV
VALAAAVTLATGVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKM
GPSDVLFISLSGAYMGLVFLQYGDLTVPIATHATYDFLILCGAYFRAKKR
MSRSSVNLKEHQGKGRGR back to topmRNA from alignment at CM002468.1:452989..455033- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6409 ID=rna6409|Name=rna6409|organism=Nannochloropsis gaditana|type=mRNA|length=2045bp|location=Sequence derived from alignment at CM002468.1:452989..455033- (Nannochloropsis gaditana)
AAAATATTCCGTCCGAAAATCCCCCGTGCGCAAGTATCCTCCCTTCGAAG
CGAGCCGCCTCTCTCTGCGACGTCATGCCTCGCCCGCTCGCCCAGTCCAT
GGACCATGGCCCCTGTGCAACCTGTCGTGCATCACAGTCGCGGACCAGAA
ATTTCCCCCTGTCACCCCTCGCACGCCCTGCCCTCCTTCAAGTGACGACA
GTTTTCGACATGGTCGGCCGCTCCACTGTGCCTGCTCGAATTTTGGAAAG
CCGTGGGGGGCAGAGGAGACGACGATACGCAGGGCGGAAAACATTTATGT
GCCTTCAACTTGGACGATTAAACACATTTTTCTTTGGGACCGCCGTATCG
CGCCTCTTCGTCTCGGCACTAGTGTACCTTGTCTTTGCTGGGTCCATTGT
ACAAGCATTCTTGGTGCCGCGTCTGCCTTGTCCATTTCACTCGCTTTCCG
CGCCGCTTCTGCGTGACAAAATTTCCGCGCCATCATCTGCCTTTGTCCCG
AGATTGCCGTATGCAGCAGACTATACATATTCAATGCACAGCAGCGTGCG
TTGGTCCAAGCCTCAAAGATCGCAAGACGACGTGCGGTACTCAACAAAAC
AAAATGTGCTCGAAGATTTCGAACAACGATTGAGGGGCAGCAACGCACAA
AGTGAGGAATCTCCAGCTTACGTAGCTGAAACACCCAGAGGGAAGGTGAG
TAAGCATTGCCATGTGATAGCAGACGTATTCTGTCATCAAATGTGCTTCT
CTCTGTGCTGGTAATGGTACATACGTCTTACAGTCAGTGGAGGCGGTACA
TCTAATCTCATCTTATGGCCCGTTTATCTTTCGTGCGCGCATTTCATTGA
TGCCTCAGAGCGCCCTCCTAGATCCTTAAGATGTGCACTTTATTCTGCCC
CTTTCCCATTCTTTCAACTCATAATTTCAATCGATACGGAAAGGGGAGGA
AAGTCAATGCCTCTTGCGCCGCGTATTGTTGACATTTTCGAAATCCTCTG
GTTGCAATTTAGCAACGCATTCCACTTCCTCCAGGTCCAAATCGGTTGCT
CATCCTCTTCAGCATTATCATGGCAGCAGCTCTTGCGGCTCTGGGTGTGA
CAGTTGGTCAGTTTGTGGACGTCTCCCCCCTGGCAACACTCAGCCTCCAA
CCCGCGATGTTCCTCTTGGGCGCCGTCTTGGCTATGCCTCTCTTTGGTAT
CGACGCGCTGCTGCAGAATGTGCAAGAAGACACGGCCAGTGAGGTCTACA
GCCTCTCCATCTTTGGGACGACGACACCCGTACTCTCTGTCGTGGCTCTC
GCCGCGGCCGTGACACTGGCGACCGGCGTGGGAGAGGAAACTCTTTTTCG
GGGCTTGATCCAGCAAGGCATCGCCTCCCTTGCGGGCCCCTGGGTAGGTC
TTGTGGTGGGTGCAGGAGTCTTTGGTCTGGCACACAAGATGGGGCCGTCA
GACGTCTTGTTCATATCTCTGTCGGGGGCCTACATGGGCTTGGTGTTCCT
GCAGTACGGCGACTTGACCGTTCCAATAGCCACGCACGCCACCTATGACT
TCTTGATCTTGTGCGGGGCATACTTCCGGGCAAAAAAGCGCATGTCTCGG
TCCTCTGTCAATTTAAAGGAGCATCAGGGCAAAGGACGGGGGAGGTAGAA
GGCATGGCTGGGATGCACAGGAGGATGATAGTCTGTGGTGAACTTTACTT
GCTACGAATGAAAGCGTTTGTTTTCTAGGAAAGCATACTGTGTTCGAATC
GGACCATCTGTTCACCTTTACAATGTCTTTCCTCTTGGTGTGCGCCTCTG
CATGGCGAGATGTATACCAGGTTTGAAATTGTCGTCATGTACAGGAGTGT
GAAAATTTGTGTCGAAGAATCATTACAGTGTGAGGGAAGGAAATATGAGG
TAAAGACGCTCAGTCATACAGAGAGGACAGACCACACTTGCAAGTTCACT
TCAATAAGTGCAGATAAGCGAGTATGATCCTATCAGTTCTGCGTTGTAAT
GCTGTCGATCGAGCAGGAAAAATGATACAAAAACCAAGTCCGTTT back to topCoding sequence (CDS) from alignment at CM002468.1:452989..455033- >rna6409 ID=rna6409|Name=rna6409|organism=Nannochloropsis gaditana|type=CDS|length=2514bp|location=Sequence derived from alignment at CM002468.1:452989..455033- (Nannochloropsis gaditana)
CAACGCATTCCACTTCCTCCAGGTCCAAATCGGTTGCTCATCCTCTTCAG
CATTATCATGGCAGCAGCTCTTGCGGCTCTGGGTGTGACAGTTGGTCAGT
TTGTGGACGTCTCCCCCCTGGCAACACTCAGCCTCCAACCCGCGATGTTC
CTCTTGGGCGCCGTCTTGGCTATGCCTCTCTTTGGTATCGACGCGCTGCT
GCAGAATGTGCAAGAAGACACGGCCAGTGAGGTCTACAGCCTCTCCATCT
TTGGGACGACGACACCCGTACTCTCTGTCGTGGCTCTCGCCGCGGCCGTG
ACACTGGCGACCGGCGTGGGAGAGGAAACTCTTTTTCGGGGCTTGATCCA
GCAAGGCATCGCCTCCCTTGCGGGCCCCTGGGTAGGTCTTGTGGTGGGTG
CAGGAGTCTTTGGTCTGGCACACAAGATGGGGCCGTCAGACGTCTTGTTC
ATATCTCTGTCGGGGGCCTACATGGGCTTGGTGTTCCTGCAGTACGGCGA
CTTGACCGTTCCAATAGCCACGCACGCCACCTATGACTTCTTGATCTTGT
GCGGGGCATACTTCCGGGCAAAAAAGCGCATGTCTCGGTCCTCTGTCAAT
TTAAAGGAGCATCAGGGCAAAGGACGGGGGAGGTAGATGCCTCGCCCGCT
CGCCCAGTCCATGGACCATGGCCCCTGTGCAACCTGTCGTGCATCACAGT
CGCGGACCAGAAATTTCCCCCTGTCACCCCTCGCACGCCCTGCCCTCCTT
CAAGTGACGACAGTTTTCGACATGGTCGGCCGCTCCACTGTGCCTGCTCG
AATTTTGGAAAGCCGTGGGGGGCAGAGGAGACGACGATACGCAGGGCGGA
AAACATTTATGTGCCTTCAACTTGGACGATTAAACACATTTTTCTTTGGG
ACCGCCGTATCGCGCCTCTTCGTCTCGGCACTAGTGTACCTTGTCTTTGC
TGGGTCCATTGTACAAGCATTCTTGGTGCCGCGTCTGCCTTGTCCATTTC
ACTCGCTTTCCGCGCCGCTTCTGCGTGACAAAATTTCCGCGCCATCATCT
GCCTTTGTCCCGAGATTGCCGTATGCAGCAGACTATACATATTCAATGCA
CAGCAGCGTGCGTTGGTCCAAGCCTCAAAGATCGCAAGACGACGTGCGGT
ACTCAACAAAACAAAATGTGCTCGAAGATTTCGAACAACGATTGAGGGGC
AGCAACGCACAAAGTGAGGAATCTCCAGCTTACGTAGCTGAAACACCCAG
AGGGAAGCAACGCATTCCACTTCCTCCAGGTCCAAATCGGTTGCTCATCC
TCTTCAGCATTATCATGGCAGCAGCTCTTGCGGCTCTGGGTGTGACAGTT
GGTCAGTTTGTGGACGTCTCCCCCCTGGCAACACTCAGCCTCCAACCCGC
GATGTTCCTCTTGGGCGCCGTCTTGGCTATGCCTCTCTTTGGTATCGACG
CGCTGCTGCAGAATGTGCAAGAAGACACGGCCAGTGAGGTCTACAGCCTC
TCCATCTTTGGGACGACGACACCCGTACTCTCTGTCGTGGCTCTCGCCGC
GGCCGTGACACTGGCGACCGGCGTGGGAGAGGAAACTCTTTTTCGGGGCT
TGATCCAGCAAGGCATCGCCTCCCTTGCGGGCCCCTGGGTAGGTCTTGTG
GTGGGTGCAGGAGTCTTTGGTCTGGCACACAAGATGGGGCCGTCAGACGT
CTTGTTCATATCTCTGTCGGGGGCCTACATGGGCTTGGTGTTCCTGCAGT
ACGGCGACTTGACCGTTCCAATAGCCACGCACGCCACCTATGACTTCTTG
ATCTTGTGCGGGGCATACTTCCGGGCAAAAAAGCGCATGTCTCGGTCCTC
TGTCAATTTAAAGGAGCATCAGGGCAAAGGACGGGGGAGGTAGATGCCTC
GCCCGCTCGCCCAGTCCATGGACCATGGCCCCTGTGCAACCTGTCGTGCA
TCACAGTCGCGGACCAGAAATTTCCCCCTGTCACCCCTCGCACGCCCTGC
CCTCCTTCAAGTGACGACAGTTTTCGACATGGTCGGCCGCTCCACTGTGC
CTGCTCGAATTTTGGAAAGCCGTGGGGGGCAGAGGAGACGACGATACGCA
GGGCGGAAAACATTTATGTGCCTTCAACTTGGACGATTAAACACATTTTT
CTTTGGGACCGCCGTATCGCGCCTCTTCGTCTCGGCACTAGTGTACCTTG
TCTTTGCTGGGTCCATTGTACAAGCATTCTTGGTGCCGCGTCTGCCTTGT
CCATTTCACTCGCTTTCCGCGCCGCTTCTGCGTGACAAAATTTCCGCGCC
ATCATCTGCCTTTGTCCCGAGATTGCCGTATGCAGCAGACTATACATATT
CAATGCACAGCAGCGTGCGTTGGTCCAAGCCTCAAAGATCGCAAGACGAC
GTGCGGTACTCAACAAAACAAAATGTGCTCGAAGATTTCGAACAACGATT
GAGGGGCAGCAACGCACAAAGTGAGGAATCTCCAGCTTACGTAGCTGAAA
CACCCAGAGGGAAG back to top
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