EWM24269.1, cds6393 (CDS) Nannochloropsis gaditana

Overview
NameEWM24269.1
Unique Namecds6393
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:454339..454959 -
Alignment locationCM002468.1:453386..454021 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24269.1
Productabortive infection protein
Orig transcript idgnl|cribi|Naga_100020g71.5402.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:454339..454959 -
CM002468.1supercontigCM002468.1:453386..454021 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0019538protein metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003675CAAX_protease
Homology
BLAST of EWM24269.1 vs. NCBI_GenBank
Match: gi|585105660|gb|EWM24269.1| (abortive infection protein [Nannochloropsis gaditana])

HSP 1 Score: 844.343 bits (2180), Expect = 0.000e+0
Identity = 418/418 (100.00%), Postives = 418/418 (100.00%), Query Frame = 0
Query:    1 MPRPLAQSMDHGPCATCRASQSRTRNFPLSPLARPALLQVTTVFDMVGRSTVPARILESRGGQRRRRYAGRKTFMCLQLGRLNTFFFGTAVSRLFVSALVYLVFAGSIVQAFLVPRLPCPFHSLSAPLLRDKISAPSSAFVPRLPYAADYTYSMHSSVRWSKPQRSQDDVRYSTKQNVLEDFEQRLRGSNAQSEESPAYVAETPRGKQRIPLPPGPNRLLILFSIIMAAALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALLQNVQEDTASEVYSLSIFGTTTPVLSVVALAAAVTLATGVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKMGPSDVLFISLSGAYMGLVFLQYGDLTVPIATHATYDFLILCGAYFRAKKRMSRSSVNLKEHQGKGRGR 418
            MPRPLAQSMDHGPCATCRASQSRTRNFPLSPLARPALLQVTTVFDMVGRSTVPARILESRGGQRRRRYAGRKTFMCLQLGRLNTFFFGTAVSRLFVSALVYLVFAGSIVQAFLVPRLPCPFHSLSAPLLRDKISAPSSAFVPRLPYAADYTYSMHSSVRWSKPQRSQDDVRYSTKQNVLEDFEQRLRGSNAQSEESPAYVAETPRGKQRIPLPPGPNRLLILFSIIMAAALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALLQNVQEDTASEVYSLSIFGTTTPVLSVVALAAAVTLATGVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKMGPSDVLFISLSGAYMGLVFLQYGDLTVPIATHATYDFLILCGAYFRAKKRMSRSSVNLKEHQGKGRGR
Sbjct:    1 MPRPLAQSMDHGPCATCRASQSRTRNFPLSPLARPALLQVTTVFDMVGRSTVPARILESRGGQRRRRYAGRKTFMCLQLGRLNTFFFGTAVSRLFVSALVYLVFAGSIVQAFLVPRLPCPFHSLSAPLLRDKISAPSSAFVPRLPYAADYTYSMHSSVRWSKPQRSQDDVRYSTKQNVLEDFEQRLRGSNAQSEESPAYVAETPRGKQRIPLPPGPNRLLILFSIIMAAALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALLQNVQEDTASEVYSLSIFGTTTPVLSVVALAAAVTLATGVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKMGPSDVLFISLSGAYMGLVFLQYGDLTVPIATHATYDFLILCGAYFRAKKRMSRSSVNLKEHQGKGRGR 418          
BLAST of EWM24269.1 vs. NCBI_GenBank
Match: gi|1084148180|gb|OGL44283.1| (hypothetical protein A2161_04845 [Candidatus Schekmanbacteria bacterium RBG_13_48_7])

HSP 1 Score: 83.5741 bits (205), Expect = 5.272e-15
Identity = 51/158 (32.28%), Postives = 87/158 (55.06%), Query Frame = 0
Query:  238 VGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALL-----QNVQE--DTASEVYSLSIFGTTTPVLSVVALAAAVTLATGVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKMGPSDVLFISLSGAYMGLVFLQYGDLTVPIATHATYDFL 388
            +G F++ +PL T++L    F+ G + A+PLF I  L+     Q++++      + + L +       L +V++ A      G GEE  FRG++Q  +  +AG   GL++   +FG AH + P   +  +  G Y+G +F++ G+L VPI THA YD+L
Sbjct:   41 LGYFLNHNPLNTINLSAIDFITGIIAALPLFFIFILMFRLPVQSIKKIIQLLEKFHQLVLNKINNFELIIVSVFA------GAGEEMFFRGMLQISLNGVAGNTGGLILSGILFGFAHFITPVYAIIAACIGVYLGWIFMETGNLLVPIVTHAFYDYL 192          
BLAST of EWM24269.1 vs. NCBI_GenBank
Match: gi|505057276|ref|WP_015244378.1| (CPBP family intramembrane metalloprotease [Singulisphaera acidiphila] >gi|430013484|gb|AGA25198.1| putative metal-dependent membrane protease [Singulisphaera acidiphila DSM 18658])

HSP 1 Score: 83.5741 bits (205), Expect = 6.068e-15
Identity = 65/188 (34.57%), Postives = 100/188 (53.19%), Query Frame = 0
Query:  220 LILFSIIMAAALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALL--------QNVQEDTASEVYSLSIFGTT-TPVLSVVALAAAVTLATGVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKMGPSDVLFISLSGAYMGLVFLQYGDLTVPIATHATYDFLILCGAYFRAK 398
            +++ +++    LA L + +G  +  SPL   +       LG V A+P++ +  LL        + ++    +E+  L  FG+     L++VALAA      GVGEE LFRG++Q  +A   G W GLV  + +FGL H +  + VL   L GAY+G V++  G+L V +  HA YDFL L  A FR +
Sbjct:   20 VVVAAVLFEGGLAPLALAIGWLMGQSPLEGFTWSIRDAFLGVVAALPMYAMFQLLMRWPIRPLERIRHFFEAELTPL--FGSRPDSDLALVALAA------GVGEEMLFRGVLQGVLAHWLGTWEGLVAASLLFGLVHPITVTYVLVAGLLGAYLGAVWIFSGNLLVVMIAHAVYDFLALR-ALFRGR 198          
BLAST of EWM24269.1 vs. NCBI_GenBank
Match: gi|299115438|emb|CBN75603.1| (Abortive infection protein [Ectocarpus siliculosus])

HSP 1 Score: 80.4925 bits (197), Expect = 7.224e-13
Identity = 74/247 (29.96%), Postives = 114/247 (46.15%), Query Frame = 0
Query:  185 RLRGSNAQSEESPAYVAETPRGKQRIPLPPGPN----RLLILFSIIMAAALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALLQNV------QEDTASEVYSLSIFGT--TTPVLSVVALAAAVTLATGVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKMGPSDVLFI-SLSGAYMGLVFLQY-GDLTVPIATHATYDFLILCGAYFRAKKRMS---RSSVNLKEHQGK 414
            R+ GS      S    AE P+G   +    GPN    R+L+   + +  A A L         V+P A      A    G + A+P+F +  LL+        + D  +++Y + +FG     PV+S+ +   A     G  EE LFRG+IQQG+++L G    LV+ + +FGLAH   P    F  +  GA  GL+++   G+L VPI  H  YD L     + RA  ++    R  +  KE + +
Sbjct:   62 RMHGSG-----SVKMAAEKPKGSGMLQ---GPNLELMRILVQGEVAVGTAAAGLAF----LTKVNPFAGTLFSWAALKAGCLGALPIFLVSVLLEKSGVDFFRKIDQDTKLYVVQVFGAKRNWPVVSLWSFVLAAN--AGFFEEVLFRGVIQQGLSTLIGGIPALVISSVLFGLAHSPVPGASSFTEACYGANFGLLYMMSGGNLLVPIIAHVLYDMLTFLEVHQRATAQLETTLRGDLPQKEQEKR 294          
BLAST of EWM24269.1 vs. NCBI_GenBank
Match: gi|670486285|ref|WP_031434537.1| (CPBP family intramembrane metalloprotease [Methylomarinum vadi])

HSP 1 Score: 77.411 bits (189), Expect = 7.437e-13
Identity = 55/164 (33.54%), Postives = 77/164 (46.95%), Query Frame = 0
Query:  230 ALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALLQNVQEDTASEVYSLSIFGTTTPVLSVVALAAAVTLAT--GVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKMGPSDVLFISLSGAYMGLVFLQYG---DLTVPIATHATYDFL 388
            +L  + V +G   D+ P   L         G    +PLF I   +QN+Q +   +V  L +  T  P +     A    LA   G+ EE LFRG++Q  I +  G   GLV    +FGL H + P   +  +L G Y+GL  L YG   +L  P+  HA YDFL
Sbjct:   21 SLLVVAVVLGWIADIDPFENLHFSEKAMFYGVAGTLPLFVIFVAMQNLQIEAVQQVRKL-LLETLGPSMHRYGWADLFILAAIAGLSEEVLFRGVVQPWIEAGWGRSAGLVFSNIIFGLVHAVTPLYAILATLVGIYLGLS-LDYGAERNLLTPVIIHAAYDFL 182          
BLAST of EWM24269.1 vs. NCBI_GenBank
Match: gi|1123619663|ref|WP_074310252.1| (CPBP family intramembrane metalloprotease [Singulisphaera sp. GP187] >gi|1119035371|emb|SIO45466.1| hypothetical protein SAMN05444166_4867 [Singulisphaera sp. GP187])

HSP 1 Score: 77.411 bits (189), Expect = 7.668e-13
Identity = 60/180 (33.33%), Postives = 93/180 (51.67%), Query Frame = 0
Query:  214 PGPNR-LLILFSIIMAAALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALLQNVQEDTASEVYSLSIFGTTTPVLSV--VALAAAVTLATGVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKMGPSDVLFISLSGAYMGLVFLQYGDLTVPIATHATYDFLIL 390
            P P++  +++ +++    LA L + +G+ V   PL   +       LG + A+P++    +L   +      +         TP+L     A  A + LA GVGEE LFRG++Q G+A   G W GLV  + +FGL H +  + VL   L GAY+G V++  G+L V +  HA YDFL L
Sbjct:   13 PTPDQGAVVVAAVLFEGGLAPLALAIGRLVGQPPLEGFTWSIRDAFLGVLAALPMYAAFQVLMRWRIGPLDRIRRF-FEAELTPLLGSRPDADLALIALAAGVGEEMLFRGVLQGGLAHWLGTWEGLVAASLLFGLLHPITTTYVLVAGLLGAYLGAVWIFSGNLLVVMIAHALYDFLAL 191          
BLAST of EWM24269.1 vs. NCBI_GenBank
Match: gi|491474543|ref|WP_005332286.1| (CPBP family intramembrane metalloprotease [Aeromonas media] >gi|615553546|gb|AHX62591.1| CAAX amino protease [Aeromonas media WS])

HSP 1 Score: 77.411 bits (189), Expect = 2.241e-12
Identity = 43/80 (53.75%), Postives = 55/80 (68.75%), Query Frame = 0
Query:  309 LATGVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKM-GPSDVLFISLSGAYMGLVFLQYGDLTVPIATHATYDF 387
            L T V EE LFRGLIQQG+AS + PW+GL+V + +FG AH   GP  +LF +L+GA  GL FL  G L+V IA H  ++F
Sbjct:  184 LFTCVAEEALFRGLIQQGVASRSKPWLGLLVASLLFGAAHLAGGPLLMLFAALAGACYGLAFLLSGRLSVAIAIHFLFNF 263          
BLAST of EWM24269.1 vs. NCBI_GenBank
Match: gi|652904943|ref|WP_027158995.1| (CPBP family intramembrane metalloprotease [Methylobacter luteus])

HSP 1 Score: 74.3294 bits (181), Expect = 7.004e-12
Identity = 57/165 (34.55%), Postives = 79/165 (47.88%), Query Frame = 0
Query:  229 AALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALLQNVQEDTASEVYSLSIFGTTTPVLSVVALAAAVTLAT--GVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKMGPSDVLFISLSGAYMGLVFLQYG---DLTVPIATHATYDFL 388
            A+L  + V +G    ++P   L    A    G +   PLF +   L+ +Q D+ + +  L I  T  P L+    +    LA   GV EE LFRG+IQ  I S  G  +GL+    +FGL H + P   L  +L G Y+G   L YG   +L  PI  H  YDFL
Sbjct:   20 ASLIVVAVVLGWIAGINPFENLRFSEAAIAYGVLGTAPLFIVFGALEQLQIDSLAHIRRLLI-DTLGPGLNRYHWSDVFMLAAIAGVSEEILFRGVIQPWIESSWGMTIGLIGSNIIFGLVHAVTPLYALMAALVGLYLGWT-LDYGGDRNLLTPIIIHGLYDFL 182          
BLAST of EWM24269.1 vs. NCBI_GenBank
Match: gi|1084672188|gb|OGP19921.1| (hypothetical protein A2038_06390 [Deltaproteobacteria bacterium GWA2_57_13] >gi|1084849129|gb|OGQ80443.1| hypothetical protein A3G40_14195 [Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_57_22])

HSP 1 Score: 74.3294 bits (181), Expect = 9.178e-12
Identity = 41/103 (39.81%), Postives = 57/103 (55.34%), Query Frame = 0
Query:  305 AAVTLATGVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKMGPSDVLFISLSGAYMGLVFLQYGDLTVPIATHATYDF--LILCGAYFRAKKRMSRSS 405
            A ++L  G+GEETLFRG+IQ  +A    PW   VV +G+FGL H + P+  +     G Y+G + L  G+L  P+  H  YDF  +I      RA  R+S  S
Sbjct:   90 ALISLLAGIGEETLFRGVIQTALADWLNPWGAWVVASGLFGLGHFITPAYAVVAVFFGLYLGALLLVSGNLLPPMIAHTLYDFFAMIYLLRRHRAITRLSECS 192          
BLAST of EWM24269.1 vs. NCBI_GenBank
Match: gi|652888716|ref|WP_027148491.1| (CPBP family intramembrane metalloprotease [Methylobacter tundripaludum])

HSP 1 Score: 73.559 bits (179), Expect = 1.275e-11
Identity = 55/165 (33.33%), Postives = 85/165 (51.52%), Query Frame = 0
Query:  229 AALAALGVTVGQFVDVSPLATLSLQPAMFLLGAVLAMPLFGIDALLQNVQEDTASEVYSLSIFGTTTPVLSVVALAAAVTLAT--GVGEETLFRGLIQQGIASLAGPWVGLVVGAGVFGLAHKMGPSDVLFISLSGAYMGLVFLQYG---DLTVPIATHATYDFL 388
            AAL  + V +G   D++P A L    +    G +  +PLF +   L+ +Q ++  ++ ++ +F T    L        + LA+  G+ EE LFRG+IQ  + S  G   GLV    +FGLAH + P   +  +L G Y+GL  + YG   +L +PI  H  YDFL
Sbjct:   20 AALILVAVFLGWIADINPFADLYFSESAIAYGVIGTIPLFLLFLTLEQMQTESLIKIKNM-LFETLGSNLHRYHWTDLLILASIAGLSEELLFRGVIQPWMESSWGMTAGLVGSNIIFGLAHAVTPLYAVLAALVGIYLGLS-MDYGGDRNLLLPIVIHGLYDFL 182          
The following BLAST results are available for this feature:
BLAST of EWM24269.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105660|gb|EWM24269.1|0.000e+0100.00abortive infection protein [Nannochloropsis gadita... [more]
gi|1084148180|gb|OGL44283.1|5.272e-1532.28hypothetical protein A2161_04845 [Candidatus Schek... [more]
gi|505057276|ref|WP_015244378.1|6.068e-1534.57CPBP family intramembrane metalloprotease [Singuli... [more]
gi|299115438|emb|CBN75603.1|7.224e-1329.96Abortive infection protein [Ectocarpus siliculosus... [more]
gi|670486285|ref|WP_031434537.1|7.437e-1333.54CPBP family intramembrane metalloprotease [Methylo... [more]
gi|1123619663|ref|WP_074310252.1|7.668e-1333.33CPBP family intramembrane metalloprotease [Singuli... [more]
gi|491474543|ref|WP_005332286.1|2.241e-1253.75CPBP family intramembrane metalloprotease [Aeromon... [more]
gi|652904943|ref|WP_027158995.1|7.004e-1234.55CPBP family intramembrane metalloprotease [Methylo... [more]
gi|1084672188|gb|OGP19921.1|9.178e-1239.81hypothetical protein A2038_06390 [Deltaproteobacte... [more]
gi|652888716|ref|WP_027148491.1|1.275e-1133.33CPBP family intramembrane metalloprotease [Methylo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6409rna6409Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications