rna6408, rna6408 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6408
Unique Name	rna6408
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1868
Alignment location	CM002468.1:450033..452998 +

Link to JBrowse

Properties


Property Name	Value
Product	dna polymerase i
Orig transcript id	gnl\|cribi\|Naga_100020g74.5364.mrna
Orig protein id	gnl\|cribi\|Naga_100020g74.5364
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:450033..452998 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g74	gene6192	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6408	rna6408-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24231.1	cds6392	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:450033..452998+
coding sequence from alignment at CM002468.1:450033..452998+

mRNA sequence

>rna6408 ID=rna6408|Name=rna6408|organism=Nannochloropsis gaditana|type=mRNA|length=1868bp
CATGGAAAGGAAAACAACACGCTTTGCGAGTTTTCTGTCCCTATCTTGTA
AGGTATGCATGCCATGGATTGGAGGCAGTCACAGAGTTGCGGCGCACTGC
GTGCTGAAGAACTCATTACGGAACTGAAGAATGATTATCACTAACTGAAA
TGGATTCACGGTAATTGGCACTGAATCAACGGTTGCACTGATATCACCTC
CAACGAACTGAAAGACTGCAGACTTTTTGGTGCATCCAAATTAGGAAACA
AATAAATAAGCATGTCGGCCCTTGCAACAACGAAGCCTGTAGAGGCTATG
GAGGACGACCGCATCGGGGAACTCCTAGAGCAGCGGAAGGGACATCCAAC
CCCCTGGTTCTCCTTCGAGTTTTTCCCACCCAAAACACCGGAAGGGGTGG
AGAAGCTTTACGAGCGCCTGGCGGAAATGGCACCGTATAATCCGCTGTTC
GTGGATTTTACTTGGGGGGCTGGGGGATCTACCGCTGAACTCACGCTGGA
GCTGACCATTGAGGCACGACGACGCTTCGGATTGATAGCTAATATGCATC
TGACTTGCACCAACATGCCCACGGAAAAGGTAGTAGACGCACTAAAGAGT
GCAAAAGATGCGGGTATTACAAACATATTGGCTCTGCGGGGCGACCCTCC
TGTAGGGCAGGAACGATGGGAACCTATTGAAGGCGGCTTCAGCTCAGCAC
TGGACCTAGTAGCTTACATCAGGAAACACCATGATACCTTCTTCAGTGTG
GGCGTGGCGGGATACCCAGAGGGCCATCCCAATCGCATCCAACAAGTGGA
CAGTCTCGAGGGATTGAGCAAGGCGGAGCTGGGGCGAGTGGCTGTGGAGC
GTGCGGAGGACGGGACGGTTACCGGGTACTATGTGTGTCGAGATAATGAC
TTTGTCCAGGAGATCGATTACCTCAAAGCGAAAGTGGATGCGGGTGCAGA
CTTTGTGATCACGCAAATGTTTTTTGATGCGGAGGTGTACGTGGCCTTCG
TTAAAACCTGCCGGTCCGCGGGTATCACGGTGCCCATTCTCCCCGGAATC
ATGTGCTTCAACACTTTGCAGGGCTTCAAACGCATGGTCGCTTTTTGCCG
TACCCGAGTGCCTGAAAAGCTGTGGATGGATATGATGGCGCTATCCAAAA
GCGACGACGATGAAGTGCGCCGTTACGGTATCGACTTCGGTGTGCGCCTG
GGCCAAGAGCTTCTCAGGGCAGGATCTTCGGGGTTGCACTTCTACTGCCT
CAATCTTTCTCGTGTTGCGCTGGGGATCGTTTCGGGCCTAGGCCTCGGGT
CGCAGTCTGTGGACGCCACGTACACGAATGAGAAGGTAGAATCTGAGATC
GAGAAAGCCATGAACGGCTCGGACAAGGTCAAGAGCAAGGAGAAAGCTCT
AAGCAATCACGACCACGTAGGGGCAGTGGCGAGCAGTTAAATGCGGAAAG
AATAGGGCAAAGTGGGGCTAAGTGAGGCTTATCTCTCCACCTTGATATGA
CCGACATGAAGAGTTTCGAGCGACGTTTGTCCTCCGGTTTACGAGCTCTG
TTATAATTGGCTTGGCGCGATGGAAAAATTGATGTATGGTCATGAACACA
GAAATAAATTTGTCGACCGTCAAAAACTTAAAATGGCACAAGGTGTATGA
ACATGAACACAGGAATAAATATGTCGACCGTCAAAAAAATAAAATGGCAC
AAATTGAGTATTTATAAAGTATTTTTAAGCATTCCTGTATTGGTAGGCGT
CCGTGCCTCTACTCCTTTGAGAAAAAGAATGGAATGGCGTGTCTTTGGTT
TAGAAAAAAGGGGTGTGAGTCGGAAAAAAGAAAACGAACAAGGAAAAAAG
AAAAACGAACTCATTATC

protein sequence of rna6408

>rna6408-protein ID=rna6408-protein|Name=rna6408|organism=Nannochloropsis gaditana|type=polypeptide|length=723bp
MRTISLWYAGVLGIAGWSPQQMSGLAAFVFSSANQCWRTAARQVTHGATF
APARSSRQPISFQGLPGASSLRSRSVLFVKPLYSVVEGRGERLKTGRGDE
ERGGGMSAAPVVVGVPSPGTAKESGVSKESEVANSNLSASDQEEDSGGGG
EGREVEEKTGSGENKDGESPDLSAELARLEELAGTIFQMAGREFKITSYV
ELSRVLFEDLKLPVVKQPSNKVLGGYYSTSNAVLNELSAMGYELPAKVLD
YRALLYLIRSKQGKKKKKKGAGEGKGQGGASGEEASSEGGGRGERMSPEE
KLMMSMLKEDSGVDALDRTMVRVGVDIEKVMERVQTMSTGGGLRTAGGAT
EFKEESFVPEEGGFEETDLAAPIPMLMQAEEEEAENLEGGSPVSLYDKGW
GAANNLVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPA
LARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQE
AAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQL
VGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIP
GIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLI
RLKKLFEPPSMTMMPKARFSEQRLTDFCTRFGFKTLALRVKSTLARVEAA
KDAEAVQDGNGGREGGGGHSFFS

mRNA from alignment at CM002468.1:450033..452998+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6408 ID=rna6408|Name=rna6408|organism=Nannochloropsis gaditana|type=mRNA|length=2966bp|location=Sequence derived from alignment at CM002468.1:450033..452998+ (Nannochloropsis gaditana)
GACGTGCAGTAGCTTTGCAATCAACGTGCCTTTCATGCAAATCTAAACAA
CATGTATCCTCAATGATGTAGGGATCCCACGGTTGACAGCCACACAGATC
TCGGCTTCTGTCCGCTTGGGTGCCGTGGGTGCGAGTGGGGGAGGCCAGGT
AAGGGGCATCCGCGTTGAACATAGGCGGCATCCAGCAGCAAGGTAGCAGC
AGCGTCGCCAGCCATTTTATACATGCGGACAATAAGTCTTTGGTATGCAG
GTGTGTTGGGCATAGCGGGTTGGAGCCCACAACAAATGTCTGGGCTAGCA
GCATTTGTTTTCAGTTCAGCAAACCAGTGTTGGAGAACAGCAGCGCGACA
AGTCACGGTAAGAAAATAGTGTCCGACAATACTGCGCATGCACTGATTGG
TTATGCTTGAGCGTCTGACTGATTCACATGTATACAACATTGCAACCATC
AACAGCATGGCGCAACATTTGCGCCCGCACGGAGTTCCCGCCAGCCGATA
TCATTTCAGGGCCTCCCGGGGGCCTCGTCTCTTAGGAGCAGGAGCGTGTT
ATTTGTAAAGCCGTTATACTCGGtggtggaaggcaggggtgAGCGGCTGA
AAACAGGGCGTGGTgacgaggagagaggagggggaatgtCTGCAGCGCCA
GTCGTTGTGGGTGTTCCCAGCCCTGGCACGGCAAAGGAATCAGGCGTGTc
caaggagagcgaggtaGCCAATAGTAACTTATCGGCCTCTGACCAGGAAG
AGGACtccggagggggcggtgagggccgggaagtggaggagaagacgggg
tCGGGAGAAAacaaggacggggagagccCGGATCTCTCAGCGGAACTGGC
GCGTCTGGAGGAGCTCGCAGGCACTATCTTTCAGATGGCCGGCCGTGAGT
TTAAGATCACCTCGTATGTGGAGCTCTCACGGGTTTTGTTCGAGGACCTG
AAGCTGCCCGTGGTGAAGCAACCCAGCAATAAGGTCTTGGGGGGGTACTA
CTCCACCTCCAACGCGGTCCTAAACGAGCTCTCTGCCATGGGATACGAGC
TCCCCGCCAAGGTACTAGACTACCGAGCGCTTTTATATCTGATTCGGAGC
aagcaagggaagaagaaaaagaagaagggcgccggggaagggaaaggcca
GGGGGGCGCTTCGGGCGAAGAGGCAAGCtcggagggcggaggccgggggg
aaCGGATGTCTCCGGAGGAGAAGTTGATGATGAGCATGCTCAAGGAAGAC
TCAGGGGTCGATGCGCTGGACCGAACTATGGTAAGAGTCGGTGTGGACAT
CGAGAAGGTGATGGAGCGAGTGCAGACGATGAgcaccgggggggggctgc
gaACCGCGGGGGGCGCCACCGAATTTAAGGAAGAGAGCTTCGtgccggag
gaagggggcttCGAAGAGACAGACCTGGCCGCCCCGATCCCGATGCTgat
gcaggcggaggaggaggaagctgagaacttggagggcgggtcccccgtct
ccctgtACGACAAAGGGTGGGGGGCGGCCAACAACCTGGTCCTCGTGGAC
GCGGCCAGCATCCTTTACCGCACCTACCACGCCATGCCCCGGCTGACGGG
GCCCGACGGCACTCCCGTTAATGCGGTCCTGGGTTTCTGCAATGTCCTGA
ACAAGCTTCTGCTTCCGGCCCTGGCGCGGAGCAGGGTGCGGCCCTACGTG
CTGGTCGTCTTCGACGGGCACGCGCCGGCCTACCGGCAGACGGCCCTCTA
CCCCAGCTATAAAGCCAATCGTgccgccacgcccgaggAGTTGGTGGCCC
AatttcccctcgcccaggaaGCGGCGATGGCGTTCGGGGCCATCAATGTG
ACGGCGccggaggggctggaggcggacgacgtGATCGCGACCTTTGCcca
ggtggcggtggagcagGTCTCCGACCTGAAGGTGACTATCGTCTCGTCGG
ACAAGGACTTCTTGCAGCTGGTGGGCGAGGATATCACAGTTTTTGACCCC
TTCAACATGGTGAGGCTGGGGCCCAACGAGGTGTTCGAAAAGTACGGCTT
GGAGCCTGCTCAGCTGCTCGATTATTTCGCCATGGTGGGCGATGCCGCAG
ACAATGTCCCGGGCATACCAGGCATCGGGCCCAAGACGGCGCAGGAGCTC
TTGGAGGAGTTTGAGAGCTTCGAGGAACTTTGGGAGTTCAAGGACGAGGT
CGAGTCGCCACGGCTTCGCAAGATCGTGGAGGATAACGTGGAAAAGTTCT
TGCTGTCCCGGAGGCTCATAAGACTGAAGAAGCTTTTTGAACCTCCCTCC
ATGACGATGATGCCCAAGGCCCGTTTTTCTGAACAAAGGCTGACGGACTT
CTGCACGCGCTTCGGGTTCAAGACCCTGGCCCTCCGCGTGAAGAGCACTT
TAGCCCGGGTTGAGGCAGCGAAGGATGCGGAGGCCGTGCAGGACGGGAac
ggtggaagggaagggggtgggggccactccttcttctcctaaTGGATTAG
AGCGACATCACGGTCTGCAGCAACTCATCCTAGAACCCCGATACCCGATG
TAGAGAGTCATGAAATAAATGACATGCAAATTAATGGCGAAATGTCGTGT
TGAACACGCGCACTTGCAGGCTGCAGAGAGCCGCCCTTGTATGAGTAGAC
CTCAGAAACATGAACGGAAAAAGGAATTAGATGAGGAGCTTGGATCGAAA
AGTCAGCGTCAAGCAATGAGTCGATGAAGTAAGAGTGATAGGATCTTGCT
CTCGAGTTGGCTTATCTCTCCGGAGGCGAGACCTGGATCCATGTGAGTGG
CGTGGCTGGGAGGATGTGCGAAGACAGAGGATTGCTTGGCCCCGGGAGGA
TGTCTCGAGAATGCACGGAGGGGGATGTCCGGGTTTAATGCCTGTGCTGC
AAACGATGAACAGACGATCCTTAAGTCTctatgaaaaaaaaaatgcaatA
ATTTACAAACGGACTT

Coding sequence (CDS) from alignment at CM002468.1:450033..452998+

>rna6408 ID=rna6408|Name=rna6408|organism=Nannochloropsis gaditana|type=CDS|length=4344bp|location=Sequence derived from alignment at CM002468.1:450033..452998+ (Nannochloropsis gaditana)
ATGCGGACAATAAGTCTTTGGTATGCAGGTGTGTTGGGCATAGCGGGTTG
GAGCCCACAACAAATGTCTGGGCTAGCAGCATTTGTTTTCAGTTCAGCAA
ACCAGTGTTGGAGAACAGCAGCGCGACAAGTCACGCATGGCGCAACATTT
GCGCCCGCACGGAGTTCCCGCCAGCCGATATCATTTCAGGGCCTCCCGGG
GGCCTCGTCTCTTAGGAGCAGGAGCGTGTTATTTGTAAAGCCGTTATACT
CGGtggtggaaggcaggggtgAGCGGCTGAAAACAGGGCGTGGTgacgag
gagagaggagggggaatgtCTGCAGCGCCAGTCGTTGTGGGTGTTCCCAG
CCCTGGCACGGCAAAGGAATCAGGCGTGTccaaggagagcgaggtaGCCA
ATAGTAACTTATCGGCCTCTGACCAGGAAGAGGACtccggagggggcggt
gagggccgggaagtggaggagaagacggggtCGGGAGAAAacaaggacgg
ggagagccCGGATCTCTCAGCGGAACTGGCGCGTCTGGAGGAGCTCGCAG
GCACTATCTTTCAGATGGCCGGCCGTGAGTTTAAGATCACCTCGTATGTG
GAGCTCTCACGGGTTTTGTTCGAGGACCTGAAGCTGCCCGTGGTGAAGCA
ACCCAGCAATAAGGTCTTGGGGGGGTACTACTCCACCTCCAACGCGGTCC
TAAACGAGCTCTCTGCCATGGGATACGAGCTCCCCGCCAAGGTACTAGAC
TACCGAGCGCTTTTATATCTGATTCGGAGCaagcaagggaagaagaaaaa
gaagaagggcgccggggaagggaaaggccaGGGGGGCGCTTCGGGCGAAG
AGGCAAGCtcggagggcggaggccggggggaaCGGATGTCTCCGGAGGAG
AAGTTGATGATGAGCATGCTCAAGGAAGACTCAGGGGTCGATGCGCTGGA
CCGAACTATGGTAAGAGTCGGTGTGGACATCGAGAAGGTGATGGAGCGAG
TGCAGACGATGAgcaccgggggggggctgcgaACCGCGGGGGGCGCCACC
GAATTTAAGGAAGAGAGCTTCGtgccggaggaagggggcttCGAAGAGAC
AGACCTGGCCGCCCCGATCCCGATGCTgatgcaggcggaggaggaggaag
ctgagaacttggagggcgggtcccccgtctccctgtACGACAAAGGGTGG
GGGGCGGCCAACAACCTGGTCCTCGTGGACGCGGCCAGCATCCTTTACCG
CACCTACCACGCCATGCCCCGGCTGACGGGGCCCGACGGCACTCCCGTTA
ATGCGGTCCTGGGTTTCTGCAATGTCCTGAACAAGCTTCTGCTTCCGGCC
CTGGCGCGGAGCAGGGTGCGGCCCTACGTGCTGGTCGTCTTCGACGGGCA
CGCGCCGGCCTACCGGCAGACGGCCCTCTACCCCAGCTATAAAGCCAATC
GTgccgccacgcccgaggAGTTGGTGGCCCAatttcccctcgcccaggaa
GCGGCGATGGCGTTCGGGGCCATCAATGTGACGGCGccggaggggctgga
ggcggacgacgtGATCGCGACCTTTGCccaggtggcggtggagcagGTCT
CCGACCTGAAGGTGACTATCGTCTCGTCGGACAAGGACTTCTTGCAGCTG
GTGGGCGAGGATATCACAGTTTTTGACCCCTTCAACATGGTGAGGCTGGG
GCCCAACGAGGTGTTCGAAAAGTACGGCTTGGAGCCTGCTCAGCTGCTCG
ATTATTTCGCCATGGTGGGCGATGCCGCAGACAATGTCCCGGGCATACCA
GGCATCGGGCCCAAGACGGCGCAGGAGCTCTTGGAGGAGTTTGAGAGCTT
CGAGGAACTTTGGGAGTTCAAGGACGAGGTCGAGTCGCCACGGCTTCGCA
AGATCGTGGAGGATAACGTGGAAAAGTTCTTGCTGTCCCGGAGGCTCATA
AGACTGAAGAAGCTTTTTGAACCTCCCTCCATGACGATGATGCCCAAGGC
CCGTTTTTCTGAACAAAGGCTGACGGACTTCTGCACGCGCTTCGGGTTCA
AGACCCTGGCCCTCCGCGTGAAGAGCACTTTAGCCCGGGTTGAGGCAGCG
AAGGATGCGGAGGCCGTGCAGGACGGGAacggtggaagggaagggggtgg
gggccactccttcttctcctaaATGCGGACAATAAGTCTTTGGTATGCAG
GTGTGTTGGGCATAGCGGGTTGGAGCCCACAACAAATGTCTGGGCTAGCA
GCATTTGTTTTCAGTTCAGCAAACCAGTGTTGGAGAACAGCAGCGCGACA
AGTCACGCATGGCGCAACATTTGCGCCCGCACGGAGTTCCCGCCAGCCGA
TATCATTTCAGGGCCTCCCGGGGGCCTCGTCTCTTAGGAGCAGGAGCGTG
TTATTTGTAAAGCCGTTATACTCGGtggtggaaggcaggggtgAGCGGCT
GAAAACAGGGCGTGGTgacgaggagagaggagggggaatgtCTGCAGCGC
CAGTCGTTGTGGGTGTTCCCAGCCCTGGCACGGCAAAGGAATCAGGCGTG
TccaaggagagcgaggtaGCCAATAGTAACTTATCGGCCTCTGACCAGGA
AGAGGACtccggagggggcggtgagggccgggaagtggaggagaagacgg
ggtCGGGAGAAAacaaggacggggagagccCGGATCTCTCAGCGGAACTG
GCGCGTCTGGAGGAGCTCGCAGGCACTATCTTTCAGATGGCCGGCCGTGA
GTTTAAGATCACCTCGTATGTGGAGCTCTCACGGGTTTTGTTCGAGGACC
TGAAGCTGCCCGTGGTGAAGCAACCCAGCAATAAGGTCTTGGGGGGGTAC
TACTCCACCTCCAACGCGGTCCTAAACGAGCTCTCTGCCATGGGATACGA
GCTCCCCGCCAAGGTACTAGACTACCGAGCGCTTTTATATCTGATTCGGA
GCaagcaagggaagaagaaaaagaagaagggcgccggggaagggaaaggc
caGGGGGGCGCTTCGGGCGAAGAGGCAAGCtcggagggcggaggccgggg
ggaaCGGATGTCTCCGGAGGAGAAGTTGATGATGAGCATGCTCAAGGAAG
ACTCAGGGGTCGATGCGCTGGACCGAACTATGGTAAGAGTCGGTGTGGAC
ATCGAGAAGGTGATGGAGCGAGTGCAGACGATGAgcaccgggggggggct
gcgaACCGCGGGGGGCGCCACCGAATTTAAGGAAGAGAGCTTCGtgccgg
aggaagggggcttCGAAGAGACAGACCTGGCCGCCCCGATCCCGATGCTg
atgcaggcggaggaggaggaagctgagaacttggagggcgggtcccccgt
ctccctgtACGACAAAGGGTGGGGGGCGGCCAACAACCTGGTCCTCGTGG
ACGCGGCCAGCATCCTTTACCGCACCTACCACGCCATGCCCCGGCTGACG
GGGCCCGACGGCACTCCCGTTAATGCGGTCCTGGGTTTCTGCAATGTCCT
GAACAAGCTTCTGCTTCCGGCCCTGGCGCGGAGCAGGGTGCGGCCCTACG
TGCTGGTCGTCTTCGACGGGCACGCGCCGGCCTACCGGCAGACGGCCCTC
TACCCCAGCTATAAAGCCAATCGTgccgccacgcccgaggAGTTGGTGGC
CCAatttcccctcgcccaggaaGCGGCGATGGCGTTCGGGGCCATCAATG
TGACGGCGccggaggggctggaggcggacgacgtGATCGCGACCTTTGCc
caggtggcggtggagcagGTCTCCGACCTGAAGGTGACTATCGTCTCGTC
GGACAAGGACTTCTTGCAGCTGGTGGGCGAGGATATCACAGTTTTTGACC
CCTTCAACATGGTGAGGCTGGGGCCCAACGAGGTGTTCGAAAAGTACGGC
TTGGAGCCTGCTCAGCTGCTCGATTATTTCGCCATGGTGGGCGATGCCGC
AGACAATGTCCCGGGCATACCAGGCATCGGGCCCAAGACGGCGCAGGAGC
TCTTGGAGGAGTTTGAGAGCTTCGAGGAACTTTGGGAGTTCAAGGACGAG
GTCGAGTCGCCACGGCTTCGCAAGATCGTGGAGGATAACGTGGAAAAGTT
CTTGCTGTCCCGGAGGCTCATAAGACTGAAGAAGCTTTTTGAACCTCCCT
CCATGACGATGATGCCCAAGGCCCGTTTTTCTGAACAAAGGCTGACGGAC
TTCTGCACGCGCTTCGGGTTCAAGACCCTGGCCCTCCGCGTGAAGAGCAC
TTTAGCCCGGGTTGAGGCAGCGAAGGATGCGGAGGCCGTGCAGGACGGGA
acggtggaagggaagggggtgggggccactccttcttctcctaa

Synonyms

Publications