EWM24231.1, cds6392 (CDS) Nannochloropsis gaditana

Overview
NameEWM24231.1
Unique Namecds6392
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:450255..450389 +
Alignment locationCM002468.1:450488..452524 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24231.1
Productdna polymerase i
Orig transcript idgnl|cribi|Naga_100020g74.5364.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:450255..450389 +
CM002468.1supercontigCM002468.1:450488..452524 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0004518nuclease activity
GO:0003677DNA binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR029060PIN_domain-like
IPR0200465-3_exonucl_a-hlix_arch_N
IPR0200455-3_exonuclease_C
IPR0024215-3_exonuclease_N
IPR008918HhH2
Homology
BLAST of EWM24231.1 vs. NCBI_GenBank
Match: gi|585105622|gb|EWM24231.1| (dna polymerase i [Nannochloropsis gaditana])

HSP 1 Score: 1461.05 bits (3781), Expect = 0.000e+0
Identity = 723/723 (100.00%), Postives = 723/723 (100.00%), Query Frame = 0
Query:    1 MRTISLWYAGVLGIAGWSPQQMSGLAAFVFSSANQCWRTAARQVTHGATFAPARSSRQPISFQGLPGASSLRSRSVLFVKPLYSVVEGRGERLKTGRGDEERGGGMSAAPVVVGVPSPGTAKESGVSKESEVANSNLSASDQEEDSGGGGEGREVEEKTGSGENKDGESPDLSAELARLEELAGTIFQMAGREFKITSYVELSRVLFEDLKLPVVKQPSNKVLGGYYSTSNAVLNELSAMGYELPAKVLDYRALLYLIRSKQGKKKKKKGAGEGKGQGGASGEEASSEGGGRGERMSPEEKLMMSMLKEDSGVDALDRTMVRVGVDIEKVMERVQTMSTGGGLRTAGGATEFKEESFVPEEGGFEETDLAAPIPMLMQAEEEEAENLEGGSPVSLYDKGWGAANNLVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLIRLKKLFEPPSMTMMPKARFSEQRLTDFCTRFGFKTLALRVKSTLARVEAAKDAEAVQDGNGGREGGGGHSFFS 723
            MRTISLWYAGVLGIAGWSPQQMSGLAAFVFSSANQCWRTAARQVTHGATFAPARSSRQPISFQGLPGASSLRSRSVLFVKPLYSVVEGRGERLKTGRGDEERGGGMSAAPVVVGVPSPGTAKESGVSKESEVANSNLSASDQEEDSGGGGEGREVEEKTGSGENKDGESPDLSAELARLEELAGTIFQMAGREFKITSYVELSRVLFEDLKLPVVKQPSNKVLGGYYSTSNAVLNELSAMGYELPAKVLDYRALLYLIRSKQGKKKKKKGAGEGKGQGGASGEEASSEGGGRGERMSPEEKLMMSMLKEDSGVDALDRTMVRVGVDIEKVMERVQTMSTGGGLRTAGGATEFKEESFVPEEGGFEETDLAAPIPMLMQAEEEEAENLEGGSPVSLYDKGWGAANNLVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLIRLKKLFEPPSMTMMPKARFSEQRLTDFCTRFGFKTLALRVKSTLARVEAAKDAEAVQDGNGGREGGGGHSFFS
Sbjct:    1 MRTISLWYAGVLGIAGWSPQQMSGLAAFVFSSANQCWRTAARQVTHGATFAPARSSRQPISFQGLPGASSLRSRSVLFVKPLYSVVEGRGERLKTGRGDEERGGGMSAAPVVVGVPSPGTAKESGVSKESEVANSNLSASDQEEDSGGGGEGREVEEKTGSGENKDGESPDLSAELARLEELAGTIFQMAGREFKITSYVELSRVLFEDLKLPVVKQPSNKVLGGYYSTSNAVLNELSAMGYELPAKVLDYRALLYLIRSKQGKKKKKKGAGEGKGQGGASGEEASSEGGGRGERMSPEEKLMMSMLKEDSGVDALDRTMVRVGVDIEKVMERVQTMSTGGGLRTAGGATEFKEESFVPEEGGFEETDLAAPIPMLMQAEEEEAENLEGGSPVSLYDKGWGAANNLVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLIRLKKLFEPPSMTMMPKARFSEQRLTDFCTRFGFKTLALRVKSTLARVEAAKDAEAVQDGNGGREGGGGHSFFS 723          
BLAST of EWM24231.1 vs. NCBI_GenBank
Match: gi|1082329691|gb|OFW97485.1| (DNA polymerase I, partial [Alphaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_45_9])

HSP 1 Score: 227.639 bits (579), Expect = 2.693e-61
Identity = 124/291 (42.61%), Postives = 180/291 (61.86%), Query Frame = 0
Query:  403 ANNLVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLIRLKKLFEPPSMTMMPKARF---SEQRLTDFCTRFGFKTLALRV 690
            +  L LVD +  ++R YHA+P LT PDGTPV AV+GFCN+L+KLL      +    ++ V+FD     +R   +Y  YKA+R   PE+LV QFPL +EAA+AFG + +   EG EADD+IAT+A++A  +    KVTIVSSDKD +QLV  DI + DP   + +G  EVFEK+G+ P +++D  A+ GD +DNVPG+PGIG KTA EL+  + S E L +   +++ P+ R+ +E N E   +S++L+ L      P    +P  +    ++  L  F    GFK+L  R+
Sbjct:    2 SKELFLVDGSGFIFRAYHALPPLTRPDGTPVGAVMGFCNMLSKLL-----STHRDAHIAVIFDAARKNFRND-IYADYKAHRPPAPEDLVPQFPLMREAAVAFG-LPIMEMEGYEADDIIATYAKLA--EAEGTKVTIVSSDKDLMQLVRGDIKLMDPMKQIMIGAAEVFEKFGVTPDKVIDVQALCGDVSDNVPGVPGIGVKTAAELINTYGSLENLLDNTAQIKQPKRRETLETNAELARISKKLVTLCDTVPVP----LPVQQLVAGNQDNLAAFLEFQGFKSLLSRL 279          
BLAST of EWM24231.1 vs. NCBI_GenBank
Match: gi|1101020741|gb|OIN85711.1| (DNA polymerase I [Alphaproteobacteria bacterium CG1_02_46_17])

HSP 1 Score: 231.106 bits (588), Expect = 4.140e-61
Identity = 123/287 (42.86%), Postives = 185/287 (64.46%), Query Frame = 0
Query:  406 LVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLIRLKK--LFEPPSMTMMPKARFSEQRLTDFCTRFGFKTLALRV 690
            L+LVD +  ++R YHA+P LT PDGTPV AV+GFCN+++KLL      +    ++ ++FD     +R   +Y +YKA+R   PE+L+ QFPL +EA+ AFG +     EG EADD+IAT+A++A +   D  VTIVSSDKD +QLV + + + DP   +++G  +V EK+G+ P Q++D  ++ GD+ DNVPG+PGIG KTA +L+ ++ S E L E   E++ P+ R+ +E+N E   +S++L+ LK       P   ++P   FSE +L DF    GFKTL  R+
Sbjct:    9 LLLVDGSGFIFRAYHALPPLTRPDGTPVGAVMGFCNMIHKLL-----TTHADAHIAIIFDAARINFRND-IYAAYKAHRPPAPEDLIPQFPLIREASEAFG-LPTLEMEGYEADDLIATYARLAHDNGVD--VTIVSSDKDLMQLVRDGVAMIDPMKQIKIGREQVIEKFGVPPEQVVDVQSLCGDSVDNVPGVPGIGIKTAAQLIIDYGSLENLLEKAGEIKQPKRREALENNAELARISKQLVTLKNDVPVTVPVEDLVPTEPFSE-KLRDFLEYQGFKTLVSRI 285          
BLAST of EWM24231.1 vs. NCBI_GenBank
Match: gi|1082305273|gb|OFW88166.1| (DNA polymerase I [Alphaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_46_13])

HSP 1 Score: 228.409 bits (581), Expect = 4.581e-60
Identity = 124/288 (43.06%), Postives = 179/288 (62.15%), Query Frame = 0
Query:  406 LVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLIRLKKLFEPPSMTMMPKARF---SEQRLTDFCTRFGFKTLALRV 690
            L LVD +  ++R YHA+P LT PDGTPV AV+GFCN+L+KLL      +    ++ V+FD     +R   +Y  YKA+R   PE+LV QFPL +EAA+AFG + +   EG EADD+IAT+A++A  +    KVTIVSSDKD +QLV  DI + DP   + +G  EVFEK+G+ P +++D  A+ GD +DNVPG+PGIG KTA EL+  + S E L +   +++ P+ R+ +E N E   +S++L+ L      P    +P  +    ++  L  F    GFK+L  R+
Sbjct:    5 LFLVDGSGFIFRAYHALPPLTRPDGTPVGAVMGFCNMLSKLL-----STHRDAHIAVIFDAARKNFRND-IYADYKAHRPPAPEDLVPQFPLMREAAVAFG-LPIMEMEGYEADDIIATYAKLA--EAEGTKVTIVSSDKDLMQLVRGDIKLMDPMKQIMIGAAEVFEKFGVTPDKVIDVQALCGDVSDNVPGVPGIGVKTAAELINTYGSLENLLDNTAQIKQPKRRETLETNAELARISKKLVTLCDTVPVP----LPVQQLVAGNQDNLAAFLEFQGFKSLLSRL 279          
BLAST of EWM24231.1 vs. NCBI_GenBank
Match: gi|502742583|ref|WP_012977567.1| (DNA polymerase I [Azospirillum lipoferum] >gi|288914268|dbj|BAI75754.1| DNA polymerase I (plasmid) [Azospirillum sp. B510])

HSP 1 Score: 224.942 bits (572), Expect = 1.123e-58
Identity = 137/312 (43.91%), Postives = 186/312 (59.62%), Query Frame = 0
Query:  401 GAANNLVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLIRLKKLFEPPSMTMMPKARFSEQR-LTDFCTRFGFKTLALRVKSTLARVEAAKDAEAVQDGNG 711
            G  + L LVD +  ++R +HA+P LT PDGTPVNAVLGF N+L KLL  A A +     V VVFD     +R    YP YKA+R   PEEL  QF L +EA  AF  +     EG EADD+IAT+A++A  Q +   VTIVSSDKD +QLV   I +FDP     +GP+EVFEK+G+ P +++D  A+ GD+ DNVPG+PGIG KTA +L+ E+   E L    D+++ P  R+ + +  E+  +SRRL+RL     PP      + R  + R L DF    GF+++  RV+     +E  KD   + DG G
Sbjct:   23 GDGSGLYLVDGSGFIFRAFHALPMLTRPDGTPVNAVLGFSNMLLKLLADAKAEA-----VAVVFDSKRLNFRNE-FYPDYKAHRPEPPEELKPQFALIREATEAF-CLPCLELEGYEADDLIATYARLA--QEAGRPVTIVSSDKDLMQLVRPGIGMFDPMKNKAIGPDEVFEKFGVPPEKVVDVQALAGDSVDNVPGVPGIGVKTAAQLITEYGDLEALLANADKIKQPARRQKLIEFAEQARISRRLVRLDDRAPPPKPLDELRVREPDHRKLIDFLKAQGFRSIVSRVE-----MEMQKDGR-IADGAG 319          
BLAST of EWM24231.1 vs. NCBI_GenBank
Match: gi|1179618377|ref|WP_083386569.1| (DNA polymerase I [Phaeospirillum fulvum] >gi|1093253410|emb|SEH25693.1| DNA polymerase I [Phaeospirillum fulvum])

HSP 1 Score: 223.016 bits (567), Expect = 3.889e-58
Identity = 124/287 (43.21%), Postives = 178/287 (62.02%), Query Frame = 0
Query:  405 NLVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLIRLKKLFE-PPSMTMMPKARFSEQRLTDFCTRFGFKTLALRV 690
            +LVL+D +  ++R +H +P ++  DGTPVNAV GF  +L KLL  + A      ++ V+FD     +R T LYP YKA+R   PEELV QFPL +EA  AF    +   EG EADD+IA +A+ A  Q +  KVTIVSSDKD +QLVG  +++FDP     +GP+EVFEK+G+ P +++D  A+ GDAADNVPG+PGIG KTA +L+ E+   E L     E++ P+ R+ + DN     LSR L++L+   + P  ++ +       +RL  F    GF++L  R+
Sbjct:   14 HLVLIDGSGFIFRAFHGLPPMSRSDGTPVNAVYGFTTMLLKLLNDSQAD-----HIAVIFDSSRKTFR-TDLYPEYKAHRPPPPEELVPQFPLVREAVRAFDVACIEM-EGFEADDLIAAYARAATLQGA--KVTIVSSDKDLMQLVGAQVSMFDPMKNRTIGPDEVFEKFGVGPDRVVDVQALCGDAADNVPGVPGIGIKTAAQLIGEYGDLETLLARAGEIKQPKRRQTLLDNAAMARLSRDLVKLRDDMDLPEPVSALAVRALVPERLAAFLAEQGFRSLINRL 291          
BLAST of EWM24231.1 vs. NCBI_GenBank
Match: gi|544701605|ref|WP_021132678.1| (DNA polymerase I [Phaeospirillum fulvum] >gi|528190926|gb|EPY01248.1| DNA polymerase I [Phaeospirillum fulvum MGU-K5])

HSP 1 Score: 222.246 bits (565), Expect = 6.127e-58
Identity = 124/287 (43.21%), Postives = 177/287 (61.67%), Query Frame = 0
Query:  405 NLVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLIRLKKLFE-PPSMTMMPKARFSEQRLTDFCTRFGFKTLALRV 690
            +LVL+D +  ++R +H +P +T  DGTPVNAV GF  +L KLL  + A      ++ V+FD     +R T LYP YKA+R   PEELV QFPL +EA  AF    +   EG EADD+IA +A+ A  Q +   VTIVSSDKD +QLVG+ + +FDP     +GP+EVFEK+G+ P +++D  A+ GDAADNVPG+PGIG KTA +L+ E+   E L     E++ P+ R+ + DN     LSR L++L+   + P  ++ +       +RL  F    GF++L  R+
Sbjct:   13 HLVLIDGSGFIFRAFHGLPPMTRSDGTPVNAVYGFTTMLLKLLNDSAAD-----HIAVIFDSSRKTFR-TDLYPEYKAHRPPPPEELVPQFPLVREAVRAFDVACIEM-EGFEADDLIAAYARAATLQGA--TVTIVSSDKDLMQLVGDRVAMFDPMKNRTIGPDEVFEKFGVGPERVVDVQALCGDAADNVPGVPGIGIKTAAQLIGEYGDLETLLARAGEIKQPKRRQTLIDNAAMARLSRDLVKLRDDMDLPEPVSALAVRALVPERLAAFLAEQGFRSLINRL 290          
BLAST of EWM24231.1 vs. NCBI_GenBank
Match: gi|1184515380|ref|WP_085085716.1| (DNA polymerase I [Azospirillum oryzae] >gi|1182757865|emb|SMF49877.1| DNA polymerase I [Azospirillum oryzae])

HSP 1 Score: 222.246 bits (565), Expect = 8.941e-58
Identity = 135/313 (43.13%), Postives = 188/313 (60.06%), Query Frame = 0
Query:  401 GAANNLVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLIRLKKLFEPPSMTMMPKARFSE-QRLTDFCTRFGFKTLALRVKSTLARVEAAKDAEAVQDGNGG 712
            G  + L LVD +  ++R +HA+P LT PDGTPVNAVLGF N+L KLL  A A +     V VVFD     +R    YP YKA+R   PEEL  QF L +EA  AF  +     EG EADD+IAT+A++A  Q +   VTIVSSDKD +QLV   + +FDP     +GP+EVFEK+G+ P +++D  A+ GD+ DNVPG+PGIG KTA +L+ E+   E L    ++++ P  R+ + +  E+  +SRRL+ L +   PP      + R  + Q+L DF    GF+++  RV+     +E  KD   + DG GG
Sbjct:   20 GDGSGLYLVDGSGFIFRAFHALPMLTRPDGTPVNAVLGFSNMLLKLLADAKAEA-----VAVVFDSKRLNFRNE-FYPDYKAHRPEPPEELKPQFALIREATEAF-CLPCLELEGFEADDLIATYARLA--QEAGRPVTIVSSDKDLMQLVRPGVGMFDPMKNKAIGPDEVFEKFGVPPEKVVDVQALAGDSVDNVPGVPGIGVKTAAQLITEYGDLEALLANAEKIKQPARRQKLIEFAEQARISRRLVLLDENVPPPKPLDELRVREPDHQKLIDFLRAQGFRSIVSRVE-----MEMQKDGR-IADGAGG 317          
BLAST of EWM24231.1 vs. NCBI_GenBank
Match: gi|504015592|ref|WP_014249586.1| (DNA polymerase I [Azospirillum lipoferum] >gi|357427204|emb|CBS90145.1| DNA polymerase I (plasmid) [Azospirillum lipoferum 4B])

HSP 1 Score: 221.861 bits (564), Expect = 1.082e-57
Identity = 130/292 (44.52%), Postives = 180/292 (61.64%), Query Frame = 0
Query:  401 GAANNLVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEVESPRLRKIVEDNVEKFLLSRRLIRLKKLFEPPSMTMMPKARFSE-QRLTDFCTRFGFKTLALRVK 691
            G  + L LVD +  ++R +HA+P LT PDGTPVNAVLGF N+L KLL  A A +     V VVFD     +R    YP YKA+R   PEEL  QF L +EA  AF  +     EG EADD+IAT+A++A  Q +  KVTIVSSDKD +QLV   + +FDP     +GP+EVFEK+G+ P +++D  A+ GD+ DNVPG+PGIG KTA +L+ E+   E L    ++++ P  R+ + +  E+  +SRRL+ L +   PP      + R  + QRL DF    GF+++  RV+
Sbjct:   21 GDGSGLYLVDGSGFIFRAFHALPMLTRPDGTPVNAVLGFSNMLLKLLADARAEA-----VAVVFDSKRLNFRNE-FYPDYKAHRPEPPEELKPQFALIREATEAF-CLPCLELEGYEADDLIATYARLA--QEAGRKVTIVSSDKDLMQLVRPGVGMFDPMKNKAIGPDEVFEKFGVPPEKVVDVQALAGDSVDNVPGVPGIGVKTAAQLITEYGDLEALLANAEKIKQPARRQKLIEFAEQARISRRLVLLDENVPPPKPLDELRVREPDHQRLIDFLKAQGFRSIVSRVE 303          
BLAST of EWM24231.1 vs. NCBI_GenBank
Match: gi|1082294530|gb|OFW82938.1| (DNA polymerase I [Alphaproteobacteria bacterium GWF2_58_20])

HSP 1 Score: 219.935 bits (559), Expect = 3.525e-57
Identity = 128/285 (44.91%), Postives = 180/285 (63.16%), Query Frame = 0
Query:  404 NNLVLVDAASILYRTYHAMPRLTGPDGTPVNAVLGFCNVLNKLLLPALARSRVRPYVLVVFDGHAPAYRQTALYPSYKANRAATPEELVAQFPLAQEAAMAFGAINVTAPEGLEADDVIATFAQVAVEQVSDLKVTIVSSDKDFLQLVGEDITVFDPFNMVRLGPNEVFEKYGLEPAQLLDYFAMVGDAADNVPGIPGIGPKTAQELLEEFESFEELWEFKDEV-ESPRLRKIVEDNVEKFLLSRRLIRLKKLF-EPPSMTMMPKARFSEQRLTDFCTRFGFKTL 686
             +L L+DA+  ++R +HA+P LT  DGTPV AV+GF N+L +LLL      R   ++ VVFD     +R T LYP YKA+R  TP EL+ QF L +E   AF    V A EG EADD++AT+A++  E+  D  V+IVSSDKD +QLVG+ +T+ DP     +GP EV EK+G+ P ++ D  A++GDA+DNVPG+PGIGPKTA +L+ EF S + L    D + ES R + ++E NVE   LS++L+ L+    EP  ++ +      + RL  F    GFK+L
Sbjct:    7 KHLTLIDASGFIFRAFHALPPLTRADGTPVGAVMGFANMLMRLLL-----ERKPEHLAVVFDVSRKTFR-TELYPEYKAHRPPTPPELIPQFALVRELVAAFSLAAVEA-EGYEADDLLATYARLGHEKGMD--VSIVSSDKDLMQLVGDGVTMLDPIRYRPIGPAEVMEKFGVPPDKVGDLLALMGDASDNVPGVPGIGPKTAAQLITEFGSLDSLLAQLDSLPESKRKQNLIE-NVELARLSKKLVTLEDHAPEPLPLSALVVPELDKARLAAFFKAQGFKSL 281          
The following BLAST results are available for this feature:
BLAST of EWM24231.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105622|gb|EWM24231.1|0.000e+0100.00dna polymerase i [Nannochloropsis gaditana][more]
gi|1082329691|gb|OFW97485.1|2.693e-6142.61DNA polymerase I, partial [Alphaproteobacteria bac... [more]
gi|1101020741|gb|OIN85711.1|4.140e-6142.86DNA polymerase I [Alphaproteobacteria bacterium CG... [more]
gi|1082305273|gb|OFW88166.1|4.581e-6043.06DNA polymerase I [Alphaproteobacteria bacterium RI... [more]
gi|502742583|ref|WP_012977567.1|1.123e-5843.91DNA polymerase I [Azospirillum lipoferum] >gi|2889... [more]
gi|1179618377|ref|WP_083386569.1|3.889e-5843.21DNA polymerase I [Phaeospirillum fulvum] >gi|10932... [more]
gi|544701605|ref|WP_021132678.1|6.127e-5843.21DNA polymerase I [Phaeospirillum fulvum] >gi|52819... [more]
gi|1184515380|ref|WP_085085716.1|8.941e-5843.13DNA polymerase I [Azospirillum oryzae] >gi|1182757... [more]
gi|504015592|ref|WP_014249586.1|1.082e-5744.52DNA polymerase I [Azospirillum lipoferum] >gi|3574... [more]
gi|1082294530|gb|OFW82938.1|3.525e-5744.91DNA polymerase I [Alphaproteobacteria bacterium GW... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6408rna6408Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications