rna6407, rna6407 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6407
Unique Name	rna6407
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1323
Alignment location	CM002468.1:447567..449697 +

Link to JBrowse

Properties


Property Name	Value
Product	methylenetetrahydrofolate reductase
Orig transcript id	gnl\|cribi\|Naga_100020g75.5359.mrna
Orig protein id	gnl\|cribi\|Naga_100020g75.5359
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:447567..449697 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g75	gene6191	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6407	rna6407-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24226.1	cds6391	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:447567..449697+
coding sequence from alignment at CM002468.1:447567..449697+

mRNA sequence

>rna6407 ID=rna6407|Name=rna6407|organism=Nannochloropsis gaditana|type=mRNA|length=1323bp
GATTGCATTCCTGGAGACGGCACAGACATGCTTCAGCTGCGTACCAGCAT
GAAGCCTGAGCCTCAAGCTACTCAGAAATAACACAGGCATACGATGAATG
TATCGGGTTCAAGGGCTCGAGACTCCCAGGAACGTAGGGGTAGGGCAGGA
AGAGTGGTAAGGCGGCTGGAAGCGAGACGGCGTTCCTGGAGACGGCACAG
ACCTGGTTCAGCCACGTATCAGCATGAAGCCTGAGCCTGAGCCTGAGCCT
GAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGA
GCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGC
CTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCT
GAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGAGCCTGA
GCCTGAGCCTGAGCCTCATGCTGAAACGTGGCTGAATCATGTCTGTGCCG
TCTACAGGACTGCAATCTCGCTTCCAGCCGCCTTGTCACCCCTTGGTTTT
TCATCTTCAGTTCCGTCCAAAATCACCTCTGCCTTTCATGCCCGATGGAT
GTTTTTTCTGCCGATGTTTTGATCGCTTTCAATTTAACAACTCTGCCCTA
AAGTTTTACACCGTTCCCGATCGACTCTTCCACACACAAATCGTATTTTC
GTGTTAGCATTCAATATTTTTAGATTTGTAGCTTGTTGTCTGCGGCAACA
CACTGGATTTGTCATGCCATGGCTTTCGTTAAGTATTCTGAGTACATGTG
TAGCCCTGCACAGGGTGGGATTGCGTGTTTGAGGGTGGGGGGGACTCTGG
CACCCTAGTGTTATGGCATGGTTTGAAAGAACATGCCCCTAGGACCTGGA
CAGAAAGGGAGATGACCAGGAGGAAGACCAGGATGTGGTGGAGATGGGGG
CAGATGGGGATCGGGACGTAAAAGGGAGTGACGAAGCCTTTTTTGCGCTG
GGTCTCCTCTCTTCAGTGGCAGCGGGCCAGGCGGTGGCTGAGACCGTGGG
TGGCGAGATGGAGGACACCTGACCAAATAATCTCCTCTACTTTCCTTTCT
GACTTGACTAATGAGTACATGCACATCTTTTAATGCAAGAATCACCATAC
ATTCCCAATGCGAATGCTCAAAAAGTCGCGACAAATGTCGACGTTGAAAA
AGGGGCGACAAATGTCAGGTCGACACCAGAATTCCAATGTCGTGGCAAAC
CTGGTCTGGGCAGCCCAGAGCTGACATGGGCCGGACAAATGGATTGCGGC
AGGCACGCCTGAGAGGCTGCATG

protein sequence of rna6407

>rna6407-protein ID=rna6407-protein|Name=rna6407|organism=Nannochloropsis gaditana|type=polypeptide|length=392bp
MSALATTKPVEAMEDDRIGELLEQRKGHPTPWFSFEFFPPKTPEGVEKLY
ERLAEMAPYNPLFVDFTWGAGGSTAELTLELTIEARRRFGLIANMHLTCT
NMPTEKVVDALKSAKDAGITNILALRGDPPVGQERWEPIEGGFSSALDLV
AYIRKHHDTFFSVGVAGYPEGHPNRIQQVDSLEGLSKAELGRVAVERAED
GTVTGYYVCRDNDFVQEIDYLKAKVDAGADFVITQMFFDAEVYVAFVKTC
RSAGITVPILPGIMCFNTLQGFKRMVAFCRTRVPEKLWMDMMALSKSDDD
EVRRYGIDFGVRLGQELLRAGSSGLHFYCLNLSRVALGIVSGLGLGSQSV
DATYTNEKVESEIEKAMNGSDKVKSKEKALSNHDHVGAVASS

mRNA from alignment at CM002468.1:447567..449697+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6407 ID=rna6407|Name=rna6407|organism=Nannochloropsis gaditana|type=mRNA|length=2131bp|location=Sequence derived from alignment at CM002468.1:447567..449697+ (Nannochloropsis gaditana)
catggaaaggaaaacaACACGCTTTGCGAGTTTTCTGTCCCTATCTTGTA
AGGTATGCATGCCATGGATTGGAGGCAGTCACAGAGTTGCGGCGCACTGC
GTGCTGAAGAACTCATTACGGAACTGAAGAATGATTATCACTAACTGAAA
TGGATTCACGGTAATTGGCACTGAATCAACGGTTGCACTGATATCACCTC
CAACGAACTGAAAGACTGCAGACTTTTTGGTGCATCCAAATTAGGAAACA
AATAAATAAGCATGTCGGCCCTTGCAACAACGAAGCCTGTAGAGGCTATG
GAGGACGACCGCATCGGGGAACTCCTAGAGCAGCGGAAGGGACATCCAAC
CCCCTGGTTCTCCTTCGAGTTTTTCCCACCCAAAACACcggaaggggtgg
agaagCTTTACGAGCGCCTGGCGGAAATGGCACCGTATAATCCGCTGTTC
GTGGATTTTACTTGGGGGGCTGGGGGATCTACCGCTGAACTCACGCTGGA
GCTGACCATTGAGGCACGACGACGCTTCGGATTGATAGCTAATATGCATC
TGACTTGCACCAACATGCCCACGGAAAAGGTAGTAGACGCACTAAAGAGT
GCAAAAGATGCGGGTATTACAAACATATTGGCTCTGCGGGGCGGTAAGTG
TCACATCTTCCTGCTTAAGAGTGGGGGAGATTATTACGTATTCTTTTTCA
AAGGCCTGCACTCTTCTGTGCTCATCCTGATCTTGACTCCCCCATGCTCT
TTCGAGTGTAGACCCTCCTGTAGGGCAGGAACGATGGGAACCTATTGAAG
GCGGCTTCAGCTCAGCACTGGACCTAGTAGCTTACATCAGGAAACACCAT
GATACCTTCTTCAgtgtgggcgtggcgggaTACCCAGAGGGCCATCCCAA
TCGCATCCAACAAGTGGACAGTCTCGAGGGATTGAGCAAGGCGGAGCTGG
GGCGAGTGGCTGTGGAGCgtgcggaggacgggacggttACCGGGTACTAT
GTGTGTCGAGATAATGACTTTGTCCAGGAGATCGATTACCTCAAAGCGAA
AGTGGATGCGGGTGCAGACTTTGTGGTGCGTTTCTGTCGGTATTCGTGAC
CGCtgtggaaagggagacagGGGTTGTAATACGCCTCAGGCTATACCAAA
TGCGTCTTTCCGATCCTACATGATTGTACGACTTTCGCTCATTCCTCTTT
TGCTCTATATCTAATACCAGATCACGCAAATGTTTTTTGATGCGGAGGTG
TACGTGGCCTTCGTTAAAACCTGCCGGTCCGCGGGTATCACGGTGCCCAT
TCTCCCCGGAATCATGTGCTTCAACACTTTGCAGGGCTTCAAACGCATGG
TCGCTTTTTGCCGTACCCGAGTGCCTGAAAAGCTGTGGATGGATATGATG
GCGCTATCCAAAAGCGACGACGATGAAGTGCGCCGTTACGGTATCGACTT
CGGTGTGCGCCTGGGCCAAGAGCTTCTCAGGGCAGGATCTTCGGGGTTGC
ACTTCTACTGCCTCAATCTTTCTCGTGTTGCGCTGGGGATCGTTTCGGGC
CTAGGCCTCGGGTCGCAGTCTGTGGACGCCACGTACACGAATGAGAAGGT
AGAATCTGAGATCGAGAAAGCCATGAACGGCTCGGACAAGgtcaagagca
aggagaaagctCTAAGCAATCACGACCACGTAGGGGCAGTGGCGAGCAGT
TAAATGCGGAAAGAATAGGGCAAAGTGGGGCTAAGTGAGGCTTATCTCTC
CACCTTGATATGACCGACATGAAGAGTTTCGAGCGACGTTTGTCCTCCGG
TTTACGAGCTCTGTTATAATTGGCTTGGCGCGATGGAAAAATTGATGTAT
GGTCATGAACACAGAAATAAATTTGTCGACCGTCAAAAACTTAAAATGGC
ACAAGGTGTATGAACATGAACACAGGAATAAATATGTCGACCGtcaaaaa
aataaaatggcACAAATTGAGTATTTATAAAGTATTTTTAAGCATTCCTG
TATTGGTAGGCGTCCGTGCCTCTACTCCTTTGAGAAAAAGAATGGAATGG
CGTGTCTTTGGTTTAGAAAAAAGGGGTGTGAGtcggaaaaaagaaaacga
acaaggaaaaaagaaaaacgaACTCATTATC

Coding sequence (CDS) from alignment at CM002468.1:447567..449697+

>rna6407 ID=rna6407|Name=rna6407|organism=Nannochloropsis gaditana|type=CDS|length=3537bp|location=Sequence derived from alignment at CM002468.1:447567..449697+ (Nannochloropsis gaditana)
ATGTCGGCCCTTGCAACAACGAAGCCTGTAGAGGCTATGGAGGACGACCG
CATCGGGGAACTCCTAGAGCAGCGGAAGGGACATCCAACCCCCTGGTTCT
CCTTCGAGTTTTTCCCACCCAAAACACcggaaggggtggagaagCTTTAC
GAGCGCCTGGCGGAAATGGCACCGTATAATCCGCTGTTCGTGGATTTTAC
TTGGGGGGCTGGGGGATCTACCGCTGAACTCACGCTGGAGCTGACCATTG
AGGCACGACGACGCTTCGGATTGATAGCTAATATGCATCTGACTTGCACC
AACATGCCCACGGAAAAGGTAGTAGACGCACTAAAGAGTGCAAAAGATGC
GGGTATTACAAACATATTGGCTCTGCGGGGCGACCCTCCTGTAGGGCAGG
AACGATGGGAACCTATTGAAGGCGGCTTCAGCTCAGCACTGGACCTAGTA
GCTTACATCAGGAAACACCATGATACCTTCTTCAgtgtgggcgtggcggg
aTACCCAGAGGGCCATCCCAATCGCATCCAACAAGTGGACAGTCTCGAGG
GATTGAGCAAGGCGGAGCTGGGGCGAGTGGCTGTGGAGCgtgcggaggac
gggacggttACCGGGTACTATGTGTGTCGAGATAATGACTTTGTCCAGGA
GATCGATTACCTCAAAGCGAAAGTGGATGCGGGTGCAGACTTTGTGATCA
CGCAAATGTTTTTTGATGCGGAGGTGTACGTGGCCTTCGTTAAAACCTGC
CGGTCCGCGGGTATCACGGTGCCCATTCTCCCCGGAATCATGTGCTTCAA
CACTTTGCAGGGCTTCAAACGCATGGTCGCTTTTTGCCGTACCCGAGTGC
CTGAAAAGCTGTGGATGGATATGATGGCGCTATCCAAAAGCGACGACGAT
GAAGTGCGCCGTTACGGTATCGACTTCGGTGTGCGCCTGGGCCAAGAGCT
TCTCAGGGCAGGATCTTCGGGGTTGCACTTCTACTGCCTCAATCTTTCTC
GTGTTGCGCTGGGGATCGTTTCGGGCCTAGGCCTCGGGTCGCAGTCTGTG
GACGCCACGTACACGAATGAGAAGGTAGAATCTGAGATCGAGAAAGCCAT
GAACGGCTCGGACAAGgtcaagagcaaggagaaagctCTAAGCAATCACG
ACCACGTAGGGGCAGTGGCGAGCAGTTAAATGTCGGCCCTTGCAACAACG
AAGCCTGTAGAGGCTATGGAGGACGACCGCATCGGGGAACTCCTAGAGCA
GCGGAAGGGACATCCAACCCCCTGGTTCTCCTTCGAGTTTTTCCCACCCA
AAACACcggaaggggtggagaagCTTTACGAGCGCCTGGCGGAAATGGCA
CCGTATAATCCGCTGTTCGTGGATTTTACTTGGGGGGCTGGGGGATCTAC
CGCTGAACTCACGCTGGAGCTGACCATTGAGGCACGACGACGCTTCGGAT
TGATAGCTAATATGCATCTGACTTGCACCAACATGCCCACGGAAAAGGTA
GTAGACGCACTAAAGAGTGCAAAAGATGCGGGTATTACAAACATATTGGC
TCTGCGGGGCGACCCTCCTGTAGGGCAGGAACGATGGGAACCTATTGAAG
GCGGCTTCAGCTCAGCACTGGACCTAGTAGCTTACATCAGGAAACACCAT
GATACCTTCTTCAgtgtgggcgtggcgggaTACCCAGAGGGCCATCCCAA
TCGCATCCAACAAGTGGACAGTCTCGAGGGATTGAGCAAGGCGGAGCTGG
GGCGAGTGGCTGTGGAGCgtgcggaggacgggacggttACCGGGTACTAT
GTGTGTCGAGATAATGACTTTGTCCAGGAGATCGATTACCTCAAAGCGAA
AGTGGATGCGGGTGCAGACTTTGTGATCACGCAAATGTTTTTTGATGCGG
AGGTGTACGTGGCCTTCGTTAAAACCTGCCGGTCCGCGGGTATCACGGTG
CCCATTCTCCCCGGAATCATGTGCTTCAACACTTTGCAGGGCTTCAAACG
CATGGTCGCTTTTTGCCGTACCCGAGTGCCTGAAAAGCTGTGGATGGATA
TGATGGCGCTATCCAAAAGCGACGACGATGAAGTGCGCCGTTACGGTATC
GACTTCGGTGTGCGCCTGGGCCAAGAGCTTCTCAGGGCAGGATCTTCGGG
GTTGCACTTCTACTGCCTCAATCTTTCTCGTGTTGCGCTGGGGATCGTTT
CGGGCCTAGGCCTCGGGTCGCAGTCTGTGGACGCCACGTACACGAATGAG
AAGGTAGAATCTGAGATCGAGAAAGCCATGAACGGCTCGGACAAGgtcaa
gagcaaggagaaagctCTAAGCAATCACGACCACGTAGGGGCAGTGGCGA
GCAGTTAAATGTCGGCCCTTGCAACAACGAAGCCTGTAGAGGCTATGGAG
GACGACCGCATCGGGGAACTCCTAGAGCAGCGGAAGGGACATCCAACCCC
CTGGTTCTCCTTCGAGTTTTTCCCACCCAAAACACcggaaggggtggaga
agCTTTACGAGCGCCTGGCGGAAATGGCACCGTATAATCCGCTGTTCGTG
GATTTTACTTGGGGGGCTGGGGGATCTACCGCTGAACTCACGCTGGAGCT
GACCATTGAGGCACGACGACGCTTCGGATTGATAGCTAATATGCATCTGA
CTTGCACCAACATGCCCACGGAAAAGGTAGTAGACGCACTAAAGAGTGCA
AAAGATGCGGGTATTACAAACATATTGGCTCTGCGGGGCGACCCTCCTGT
AGGGCAGGAACGATGGGAACCTATTGAAGGCGGCTTCAGCTCAGCACTGG
ACCTAGTAGCTTACATCAGGAAACACCATGATACCTTCTTCAgtgtgggc
gtggcgggaTACCCAGAGGGCCATCCCAATCGCATCCAACAAGTGGACAG
TCTCGAGGGATTGAGCAAGGCGGAGCTGGGGCGAGTGGCTGTGGAGCgtg
cggaggacgggacggttACCGGGTACTATGTGTGTCGAGATAATGACTTT
GTCCAGGAGATCGATTACCTCAAAGCGAAAGTGGATGCGGGTGCAGACTT
TGTGATCACGCAAATGTTTTTTGATGCGGAGGTGTACGTGGCCTTCGTTA
AAACCTGCCGGTCCGCGGGTATCACGGTGCCCATTCTCCCCGGAATCATG
TGCTTCAACACTTTGCAGGGCTTCAAACGCATGGTCGCTTTTTGCCGTAC
CCGAGTGCCTGAAAAGCTGTGGATGGATATGATGGCGCTATCCAAAAGCG
ACGACGATGAAGTGCGCCGTTACGGTATCGACTTCGGTGTGCGCCTGGGC
CAAGAGCTTCTCAGGGCAGGATCTTCGGGGTTGCACTTCTACTGCCTCAA
TCTTTCTCGTGTTGCGCTGGGGATCGTTTCGGGCCTAGGCCTCGGGTCGC
AGTCTGTGGACGCCACGTACACGAATGAGAAGGTAGAATCTGAGATCGAG
AAAGCCATGAACGGCTCGGACAAGgtcaagagcaaggagaaagctCTAAG
CAATCACGACCACGTAGGGGCAGTGGCGAGCAGTTAA

Synonyms

Publications