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Properties
| Property Name | Value |
|---|
| Product | f-box protein sne-like protein |
| Orig transcript id | gnl|cribi|Naga_100020g77.5410.mrna |
| Orig protein id | gnl|cribi|Naga_100020g77.5410 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:444462..446090 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6405 ID=rna6405|Name=rna6405|organism=Nannochloropsis gaditana|type=mRNA|length=3555bp
ATGTCTCTAAGCCAATGTTTTCCTCCCACGGCTCCTAGGTCTCTACTCCT
GGGAGAGGAATTGAGGGGTGTAGGCAAGTGGAGTCGAAACTCCTATCGAG
GGGGTTCCCCGCGGGGAATGCAACGATGCGCCTCGGTACCACGGCTTGCT
AACAAAGGAAAAGCTCTTGGCGGTAGCTGCAGTTCCCACAGCTGCAGCAT
TGGAAATTGTAGCAGCGTTCGTCCTATCACAGGAGGTGCTGGCGGGAAGG
AGCGTAAATACTTGCAGGCCAAGTCGCGCGCTGAAATTGTGACAAGCATC
AATGCGAAGCCCCGCACGAGAAGAAGCTGGGCGCCACCGTCCTCCACTCT
TTCACAGACATTGAAATCTGCAGAAAACAGTCAGGCAGGATGGCGATGTG
CACCGACTGGTGTAAACAAGGGAGTCGCTCTCGGACAGCGCGCCCGTCCA
CAGCAGGTTATTCTGCGGCAGAGCCCTGCATCATCTGGCACAGTGGTCAA
AGATCTGAGGCAAATATTGCCTGATGACGCACCAGCGCGGACAGCGATGT
TAAAAGCCTTAGAAGGAGGACATGTGGGAACGTGTGTTCAAGTCCTGCAA
CAACTGAGCGCGGAGGGTGTATATTCGCTTGACAAGCCACTTGCATGCCA
ATTGGTGGATAAGTGCGTGGAGAGCAAGGCATGGCCCGTTGTCATGAACA
GCTTGCTTCCCTGTCCTGCCTTTCCGATGGACACGGGCATGTGCTCCTAC
ATCCTGGAGGCCTGCTTGAGAGCCCGGCGTTGGCGCCCGGCCCTGGCCTT
GGTGCGCTCGCGCATGCCGTCCAGGGGGCTGCAGCCTACGCGCGAGGCGT
ACGAGGGAGTTCTTATGGTTTGCGGACGCTGTCAGGAAGCGGGGGAAGTG
CTGCGGCTACTAGAGGAGATGCACGCGCGGCGTCTCCTAGAGACGGGGAG
TGCGAAGGATATGCGCGACCTGGCCGTGAAGGCAGCCGCCGCAGGTGCTT
GGGAGGCTGGCCTCATTGTATGCCAGGAATATCTGCGGACGGTTCCAGGA
GGAACGGTCGGAAAAGGGGAAAGATTTTTACCTGGAATGCGGCAGAGAGG
CCGTACGCCTGCGCCTGAGGTGCCGCGGTGGTCTGCTTCCGTCGTCGAAT
TAGAGGCAGAGATGGTAGAGGCGACGATTCTGGCCTGTCAGCGGGACTTG
CGAGAGGCGCACCGGATGAATGAGCACGCCCTCCTTTCGCGCATGTGCAC
GCGGCTGTGGGAGCTGGTCCAAGAGATGCAAAGACGGCGGGGCCTTGAGC
TTGGTCGTCGAGCATGGGACTCCCTTGTGCATGTGTGTTCCAAGGCGGGC
AATACCCAGCTGATCAGTCAGATGATGGACGCCGTGGCGGTGGACGAGAG
GGTTGACTCGGGGCATTGGGCGCAGCGACACGCGGCTTTGCGACGTTGTT
GGGTTGACCGGGACTGGGCCCGGGCACGCGCGCTTCTGGGAAGTTTTTTG
GCCTCGTGCGGGAGGGAATCCCCGCCGGAGTCAGACGAGCTGGTGACGAT
GGTCTTGGACTGTGGCCTTCGAGGTGACCTGGAGCAGGAGGCCCTGGCCG
TGTTTAACGCCTGGTGGGACGCCGACCCCAGCTTCTCCCCGAGCTCGAGG
TGCCGTGTAAAGGCCGTGCGGACAGCGTTAAAATTGGCGAGGGTCTCCTC
GGCATTTCCATCATTGTCTGTCACCCCACCGCGCGATTCAAACTCTCTAG
ACTCTTTGCGTATACAAGTAGGAGCGACAGAGGAGGCTCGCATCGGATCC
TCAGGCCTTCAGGGCCTGGCCGACCTTCTGGATCGGTTCGAGAGGCGCGC
ACCGAGCCAAAGGGCCATTGTCTGCAATATGGTGATGGAGCACGCGCGGG
TCCATCGACTTGTGGAAGAGGGATTTGCATTTCTCGAAGCCATGCGGGCT
CTAGATATTCCCCGTCAAAGCGCAACCCTGCAGCCCTTGCTCAAGCTGTG
TTCCTCTGCGAACCGGCAGCGGGATGTTGTGCGCCTGGTGGGCGAGATGG
TGGAAAAGGATAAGCTGAAGCCTCAGGCACAAACATACAGCCAGGTCATA
GAGGCAGCGACGCGGGCGGACATGGTCGAGGAGGCGCTGAAGCTCTTCCA
AACGATGATTGCGGAGGGATTCCCAGCGGGAGACAAAGAGTGCACAGACC
TTATGGCCGCTCTGGCGCGGAATGGGGACTGGAGCCGGGCTTTAGACCTG
CTTCAGGACATACGAGTTTACACCAAGCGTCCGCCGGCCTGTATCGTCTA
TACCGCGGCGGTGAACGCGTGCGGGAACGGGGGGGCGTGGGAGATGGCCC
TGATGCTGATGCGGCGGATGGAGGAGGAAGGCATTGCGCCGAACAGCTAC
ACCTACAGCTCGGCAATTAAGGCGTGTTCGCGGGCTGGGAAGTGGGAACA
GGCATCTGCGCTTTTTACTGAGATGCAGGAACGGGGACTACCGCAGAATG
AGGTCACTTACACGGTGATCTTGAACGCGCACGCGAAAGCCGGCCGCCTT
CAAGAGGCAGCCGCCTGTCTGGAGGGGATGAAGAAGCGGGGCCTCAGCCC
GTCCACCCCGCACTACACAGCTGCGATCGATGCTTGCAGCCGCTCGGGAG
AGTACCAACAAGCTCTGCGCTGGTTCGAGGAAATGAAGAATGAGAAAGTG
CCCATCAACCGCATGACGTACTCGGCGACAATAGCTGTTTGCGGTAAGGG
AGGGGCTTGGGAGCAAGCGGTCCGTGTGCTGTTGGATATGATGCTCACTT
CAAGAGATGGGTCATCTCACGTCTGTTATATGCTTGCGGTTGACGCCTGT
CGGCGCTCCGATCAGTGGCCTGTCGCAGCATATCTCTGGGATTTGATCGA
GCTGGTGGACCCCAAGGAACTAAATCAACCCACTCTGAACTCTCTCATTT
GCGCAATGGAACACCCGGCCCTTCACTCCCTCGTGGCGTCCTTCTACCAG
CGAGCCTACGACAAGGGGCAAGTCAATCACTGGAGCGTCGCCTTCTACCG
AGTCGTGGATCTGCACAATTTTTCTCGGCCGTTGGCCAAAGCGGCGCTGC
ATCACGTCTTAGAATGCATGCTTGAAAAGCATGGTCCAGGTGTAGCGAGG
GATTTGTCGATAGTCTCCGATGGAGAAGAGATGGGGACCAAGGAAGAAAA
GGGGTTCCGGAGTACGGCTCCTTTCCAATCTCTAAGTGGCGAGATCCCTT
GTGACCCAGCCATCTCCACGCAGACGGACAAGAAGTGGTCGGCGAGTGAG
ATGTACCTACCTTGGCCCCGCAACAAGGCACGTCACGGCTACGTCCAAGA
TCCTCGCGACCCCCTCGTGATTGTCACCGGCCACGGCAGGAAGCGAGCAG
CGGGGACAAGCGTGCTGCGTGATGACATTGCTGATTTTTTGGCCTCAGAG
TTTGACCCTCCCTTGACCACAAAAACGATGCCTTACAACCCTGGACGGCT
ACTCGTGCCAAGTTCGACGTTGCTTACGTATCTTTTGGCAAAAAGTGGTT
CGTAG back to topprotein sequence of rna6405 >rna6405-protein ID=rna6405-protein|Name=rna6405|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MSKITGTRLYRQQMPHNHMDEGISRLPGNDESLAIIPIVKGRPRFPLMAL
QFTMDEDENSDENDVDGNLTRGRDWGDDKYEAISSNYMDGFQDGVACRAL
VIHPSKCNGNLLHKDYLAGGRCPRATMETLPQDTIKQILRFLPAQSLLVS
EMVCRLWRDLASTDDAHWEDLCKRTYGLSPENFSPPPDPVKLLYMLTYSS
LSEIKYGSSGTGSGRMGRLGFLF back to topmRNA from alignment at CM002468.1:444462..446090+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6405 ID=rna6405|Name=rna6405|organism=Nannochloropsis gaditana|type=mRNA|length=1629bp|location=Sequence derived from alignment at CM002468.1:444462..446090+ (Nannochloropsis gaditana)
CCATGTGACCCCCTTGATCGACTCGACAGTTGCCGTCTCGCCGATTTTGA
GCACTCTTACTTAGAGACACTTCAGTCTTTATGCGCGTCGAAAGCCACAA
TCCGTCTCACGTCTACTATTCTGTATTTGCAGGTGCGTAATTTACAAGCT
GTGAAGGTAGCGGATCAAATTTTTGCTCGAGGCTTGGGCCTCCATCCTTG
ATCTCGTTAGCACTGCCGCCCATGTCAAAGATCACCGGGACGCGGCTGTA
TCGACAACAAATGCCTCACAATCACATGGATGAGGGCATATCGAGGCTTC
CTGGTAAGCAAATACGTATAAATGGGAGGCTTGTACTCCGGCAGCTCCAC
ATGAAAAAAGACTAAAAGTGAACTCCGTACTTTCTCGAGATCTCCTTGCA
AATGCTCTGCAATGTTTCATGCATCGTTGTAATTCATACAATGACCAGAG
CTCCTCGATTTACCCGACGACTAGGTAACGATGAATCTCTAGCAATAATT
CCTATCGTGAAAGGTCGACCACGTTTTCCTTTAATGGCGCTGCAGTTTAc
tatggacgaggacgagaaCTCTGATGAAAACGACGTCGACGGCAACCTGA
CACGGGGAAGAGACTGGGGAGACGACAAGTACGAGGCGATATCGAGTAAT
TATATGGATGGATTCCAAGACGGTGTGGCATGCCGAGCACTAGTTATTCA
CCCCTCCAAGTGCAATGGCAATTTGTTGCACAAGGTACGTGTGAAAAACT
ATAAATTTGATGGTGGGTGAAAGAGCAAACTGTTACGCTGCTGACTGCTC
ACACCTCGTTCGACTACACCGTTTGCAGGATTATCTCGCGGGCGGACGTT
GTCCACGTGCCACCATGGAAACTCTACCGCAAGACACCATAAAGCAGATC
CTCCGCTTTCTGCCCGCACAGTCTCTGCTCGTCTCGGAAATGGTTTGTCG
CCTTTGGCGCGACTTAGCAAGCACGGATGATGCCCACTGGGAGGTGAGTG
ATGGGTCAAGAGGGCCCCGAGGCCGGGTCCAATCTCTTATACAAGTGACA
CCCGTGCGTCATTTCGGGCCTTCATGCTCTTTCTACCTACAGTCTCAGCC
CTGTTGATGTTCGATCCCAGATTAGCTCCACCGGAACAAGCTTAATGTAC
TCCGTCTGATCTCCGTGTTATATCAACATTTTACGTAACCACAGGACTTG
TGCAAGCGAACGTACGGTCTTTCGCCTGAAAATttctcgccgccgccgga
TCCGGTGAAGCTCCTCTACATGCTCACatattcctccctttctgaGATTA
AATATGGTTCTAGTGGTACAGGATCCGGGCGCATGGGAAGATTGGGGTTT
TTGTTTTGATTCTCGACAGgatgaggtggaggcagctgGTCCTCATAAAT
TTCGATACAGAGGTTGCACTGGCGAGCACAAACAGTATTTTCGTGAGTTT
TTTTTTGGGTAGCGTATCTGATGAGAAGAAATGTGCCATGTTGAATTGCT
CGTTGTAAAttaggagaaggagaggagaggagggacgaatCCACACACAT
GTAAAGAGTGAAATCTCTTCTTACCAAACAAAACGCAAATCTGCAAGCCC
TTAAAAGAAAGAATTCGCGGTTTGGAGAG back to topCoding sequence (CDS) from alignment at CM002468.1:444462..446090+ >rna6405 ID=rna6405|Name=rna6405|organism=Nannochloropsis gaditana|type=CDS|length=2688bp|location=Sequence derived from alignment at CM002468.1:444462..446090+ (Nannochloropsis gaditana)
ATGTCAAAGATCACCGGGACGCGGCTGTATCGACAACAAATGCCTCACAA
TCACATGGATGAGGGCATATCGAGGCTTCCTGGTAACGATGAATCTCTAG
CAATAATTCCTATCGTGAAAGGTCGACCACGTTTTCCTTTAATGGCGCTG
CAGTTTActatggacgaggacgagaaCTCTGATGAAAACGACGTCGACGG
CAACCTGACACGGGGAAGAGACTGGGGAGACGACAAGTACGAGGCGATAT
CGAGTAATTATATGGATGGATTCCAAGACGGTGTGGCATGCCGAGCACTA
GTTATTCACCCCTCCAAGTGCAATGGCAATTTGTTGCACAAGGATTATCT
CGCGGGCGGACGTTGTCCACGTGCCACCATGGAAACTCTACCGCAAGACA
CCATAAAGCAGATCCTCCGCTTTCTGCCCGCACAGTCTCTGCTCGTCTCG
GAAATGGTTTGTCGCCTTTGGCGCGACTTAGCAAGCACGGATGATGCCCA
CTGGGAGGACTTGTGCAAGCGAACGTACGGTCTTTCGCCTGAAAATttct
cgccgccgccggaTCCGGTGAAGCTCCTCTACATGCTCACatattcctcc
ctttctgaGATTAAATATGGTTCTAGTGGTACAGGATCCGGGCGCATGGG
AAGATTGGGGTTTTTGTTTTGAATGTCAAAGATCACCGGGACGCGGCTGT
ATCGACAACAAATGCCTCACAATCACATGGATGAGGGCATATCGAGGCTT
CCTGGTAACGATGAATCTCTAGCAATAATTCCTATCGTGAAAGGTCGACC
ACGTTTTCCTTTAATGGCGCTGCAGTTTActatggacgaggacgagaaCT
CTGATGAAAACGACGTCGACGGCAACCTGACACGGGGAAGAGACTGGGGA
GACGACAAGTACGAGGCGATATCGAGTAATTATATGGATGGATTCCAAGA
CGGTGTGGCATGCCGAGCACTAGTTATTCACCCCTCCAAGTGCAATGGCA
ATTTGTTGCACAAGGATTATCTCGCGGGCGGACGTTGTCCACGTGCCACC
ATGGAAACTCTACCGCAAGACACCATAAAGCAGATCCTCCGCTTTCTGCC
CGCACAGTCTCTGCTCGTCTCGGAAATGGTTTGTCGCCTTTGGCGCGACT
TAGCAAGCACGGATGATGCCCACTGGGAGGACTTGTGCAAGCGAACGTAC
GGTCTTTCGCCTGAAAATttctcgccgccgccggaTCCGGTGAAGCTCCT
CTACATGCTCACatattcctccctttctgaGATTAAATATGGTTCTAGTG
GTACAGGATCCGGGCGCATGGGAAGATTGGGGTTTTTGTTTTGAATGTCA
AAGATCACCGGGACGCGGCTGTATCGACAACAAATGCCTCACAATCACAT
GGATGAGGGCATATCGAGGCTTCCTGGTAACGATGAATCTCTAGCAATAA
TTCCTATCGTGAAAGGTCGACCACGTTTTCCTTTAATGGCGCTGCAGTTT
ActatggacgaggacgagaaCTCTGATGAAAACGACGTCGACGGCAACCT
GACACGGGGAAGAGACTGGGGAGACGACAAGTACGAGGCGATATCGAGTA
ATTATATGGATGGATTCCAAGACGGTGTGGCATGCCGAGCACTAGTTATT
CACCCCTCCAAGTGCAATGGCAATTTGTTGCACAAGGATTATCTCGCGGG
CGGACGTTGTCCACGTGCCACCATGGAAACTCTACCGCAAGACACCATAA
AGCAGATCCTCCGCTTTCTGCCCGCACAGTCTCTGCTCGTCTCGGAAATG
GTTTGTCGCCTTTGGCGCGACTTAGCAAGCACGGATGATGCCCACTGGGA
GGACTTGTGCAAGCGAACGTACGGTCTTTCGCCTGAAAATttctcgccgc
cgccggaTCCGGTGAAGCTCCTCTACATGCTCACatattcctccctttct
gaGATTAAATATGGTTCTAGTGGTACAGGATCCGGGCGCATGGGAAGATT
GGGGTTTTTGTTTTGAATGTCAAAGATCACCGGGACGCGGCTGTATCGAC
AACAAATGCCTCACAATCACATGGATGAGGGCATATCGAGGCTTCCTGGT
AACGATGAATCTCTAGCAATAATTCCTATCGTGAAAGGTCGACCACGTTT
TCCTTTAATGGCGCTGCAGTTTActatggacgaggacgagaaCTCTGATG
AAAACGACGTCGACGGCAACCTGACACGGGGAAGAGACTGGGGAGACGAC
AAGTACGAGGCGATATCGAGTAATTATATGGATGGATTCCAAGACGGTGT
GGCATGCCGAGCACTAGTTATTCACCCCTCCAAGTGCAATGGCAATTTGT
TGCACAAGGATTATCTCGCGGGCGGACGTTGTCCACGTGCCACCATGGAA
ACTCTACCGCAAGACACCATAAAGCAGATCCTCCGCTTTCTGCCCGCACA
GTCTCTGCTCGTCTCGGAAATGGTTTGTCGCCTTTGGCGCGACTTAGCAA
GCACGGATGATGCCCACTGGGAGGACTTGTGCAAGCGAACGTACGGTCTT
TCGCCTGAAAATttctcgccgccgccggaTCCGGTGAAGCTCCTCTACAT
GCTCACatattcctccctttctgaGATTAAATATGGTTCTAGTGGTACAG
GATCCGGGCGCATGGGAAGATTGGGGTTTTTGTTTTGA back to top
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