EWM24277.1, cds6389 (CDS) Nannochloropsis gaditana

Overview
NameEWM24277.1
Unique Namecds6389
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:444683..444764 +
Alignment locationCM002468.1:444936..445195 +
Alignment locationCM002468.1:445290..445454 +
Alignment locationCM002468.1:445656..445820 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24277.1
Productf-box protein sne-like protein
Orig transcript idgnl|cribi|Naga_100020g77.5410.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:444683..444764 +
CM002468.1supercontigCM002468.1:444936..445195 +
CM002468.1supercontigCM002468.1:445290..445454 +
CM002468.1supercontigCM002468.1:445656..445820 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom
Homology
[Close]
BLAST of EWM24277.1 vs. NCBI_GenBank
Match: gi|585105668|gb|EWM24277.1| (f-box protein sne-like protein [Nannochloropsis gaditana])

HSP 1 Score: 465.692 bits (1197), Expect = 4.314e-166
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0 
Query:    1 MSKITGTRLYRQQMPHNHMDEGISRLPGNDESLAIIPIVKGRPRFPLMALQFTMDEDENSDENDVDGNLTRGRDWGDDKYEAISSNYMDGFQDGVACRALVIHPSKCNGNLLHKDYLAGGRCPRATMETLPQDTIKQILRFLPAQSLLVSEMVCRLWRDLASTDDAHWEDLCKRTYGLSPENFSPPPDPVKLLYMLTYSSLSEIKYGSSGTGSGRMGRLGFLF 223
            MSKITGTRLYRQQMPHNHMDEGISRLPGNDESLAIIPIVKGRPRFPLMALQFTMDEDENSDENDVDGNLTRGRDWGDDKYEAISSNYMDGFQDGVACRALVIHPSKCNGNLLHKDYLAGGRCPRATMETLPQDTIKQILRFLPAQSLLVSEMVCRLWRDLASTDDAHWEDLCKRTYGLSPENFSPPPDPVKLLYMLTYSSLSEIKYGSSGTGSGRMGRLGFLF
Sbjct:    1 MSKITGTRLYRQQMPHNHMDEGISRLPGNDESLAIIPIVKGRPRFPLMALQFTMDEDENSDENDVDGNLTRGRDWGDDKYEAISSNYMDGFQDGVACRALVIHPSKCNGNLLHKDYLAGGRCPRATMETLPQDTIKQILRFLPAQSLLVSEMVCRLWRDLASTDDAHWEDLCKRTYGLSPENFSPPPDPVKLLYMLTYSSLSEIKYGSSGTGSGRMGRLGFLF 223
The following BLAST results are available for this feature:
BLAST of EWM24277.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105668|gb|EWM24277.1|4.314e-166100.00f-box protein sne-like protein [Nannochloropsis ga... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6405rna6405Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications