rna6399, rna6399 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6399
Unique Name	rna6399
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2637
Alignment location	CM002468.1:430080..431878 -

Link to JBrowse

Properties


Property Name	Value
Product	atp-dependent dna helicase
Orig transcript id	gnl\|cribi\|Naga_100020g82.5374.mrna
Orig protein id	gnl\|cribi\|Naga_100020g82.5374
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:430080..431878 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100020g82	gene6183	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24241.1	cds6384	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6399	rna6399-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:430080..431878-
coding sequence from alignment at CM002468.1:430080..431878-

mRNA sequence

>rna6399 ID=rna6399|Name=rna6399|organism=Nannochloropsis gaditana|type=mRNA|length=2637bp
GCGATCGAGGGCGGGTGGCAGGCGGCCATGCTGGCTCCCACGGAGATCCT
GGCCTTCCAGCACAAAGACACGCTACAGGAGCTCTCCAGAGGCTTGAAGG
TCCAAATACGCGAAAGGGAGGCTGTGGAGGAGACGAGAGGGACCAGCGCG
CATACGGACGGTGGGTCTCAGTCCGGCTCGAGGCCTGGCGATGATGCTCA
GAGGTTGGGTGGGAGTGAGGAGGGGGAAGGGGCGTGGCGGCCTCTGCGGA
TCGAAGTCCTGACGAGCAATTCGAAAAGAGGCAAAGCAAGAAAAGTCCTG
CTAGAGGAGCTGCGGCGCGGCGAGATAGATATCCTCATCGGCACCCACTC
CTTACTGAGTGACGAGGTTGTGTTCCGAGACCTGGGCCTGACTGTCATCG
ATGAGGAGCATCGCTTCGGGGTGAGGCAGCGGGAGAAGCTCTCCAACGAC
ACCAACGTGCTCTATATGAGCGCAACACCGATACCTCGGACATTACTTCT
GACAAACTACGGGGACATGGAGGTGAGTCGGTTGGACGAGGCCCCAGCAA
GGGACGTTCAGGTGACCACGTCCATCTTTCCACTGACGAGCTTGGTGCAA
ATCGCTGAGCGTCTACGAAAAAAGATCCTCGAGAACTCAGGGGAAAAGGT
GTTCTGGGTGCTGCCGTGTATCGAGGAGAAACGATCCTCGGATAAAGACA
GGACGGAGGAGGGGGAGGAGAAAAGAGGGGAAGCGGGAGAGGAGTGTGTG
AAAATCACCTCCGTGACGCAAAGACACCAGGCGATGGTCGAACTACTGGG
AGAGGAGCTAGTTGGAATGGTGCATGGGCGTATGGATTCCGAGAGCAAGT
TGCAGGCGCTTCGAGACTTCAGTGCGGGTGTGACGAGGGTGCTGGTGTCG
ACGTCAGTGGTGGAGGTGGGGGTGGATGTGCCGGATGCCACGGTCTGTAT
CGTGGAGCACGCGGAGTACTTCGGTCTCTCCCAATTGCATCAGCTCCGGG
GCCGGATAGGCCGCGGGTACGCTGTCTCAGCCAAGGCAGATCGTAAGGTT
ATGGACCAGCTCACCGAGTGTCACTGTGTGTTAGCCTATGACGACACCAG
TCCCAACAAAGAGAAGGCCCTGCAGCGTCTCCTGACACTGAAAAAGACCG
TCGATGGGTTTGAGATAGCTGAGCAAGATCTTAAGCTTCGGGGTCCAGGA
GAAGTTTTAGGAAACCGGCAGTCGGGTCACAAGGGGTTCCGTCTAGTGGA
CCTGGCTAAACATGAGGGGCTCTTGGACGAGGCCAACCAGGTTGCCCGGG
CCCACGCTGATTCGGTCGTGCGGCGGGAAGAAGGGGCCACGGTGGAAGCA
GTAGCACATGGAAATGTTTTGGAGTACGAAGGCGTCGAAACGCTCCTACG
GATTTTTGAAGCGAAACCCCCTTCGTCGGGGGAAAACATTCAGAGGGAGT
CACAGCCATCTAGCAGCAGTAGCAGTAGCAGCAGCAAAGGTAGCTCTCAG
TCTAAGAACAAATTTTTACTCGAACCCACTGCAAGCCCCTCATCATCCAT
GAAGCTCTCTATGGGAGGCATGTCCAAGAAGAAGCCACCTACTTCTTTGC
AAAAATCGAAATCGGCGCCCATTGCTAACGCGTGCACCGCCCCCGCACCG
TCTTCCATTTCTGACTTACCCCCGGGATGGACAACTGTCACGTACGGAGA
TCGCTTCGAGATCAGCACGCCTCCGCCGTCATCTGGAGACGAAGAGAATG
AGGGAGGAGAGCTGACCCTGATGCCCGGGACGGAGCCCGTATTGAGCACA
CGCTTTTCGATCGACGACCTTCCCATTCCGCGGGTTTCCATCGACCTGGA
AGCGGAGGACGTTACATTTATCATCTTTGACACAGAGACCACGGGGCTCA
GGGCGGAGTCAGAGCGTATCATTCAACTGGCCGCGAAGGTCCTTTCACCT
TCAAACTGGGGGGGGGAAGAGGATGACGAACAAGCAAATGAGCTAGTTGC
TGCAGGCTTGGCTTGTGGAGGTGAGCCCGAGGACGGTTTGTTGTTCAATG
CGTACGTGGATCCGGGCTTCTGGATCCCAGCGAAGATAACTGAAATCACA
GGCATCAGCAATGAATTTCTTTTCCGGCAGCGGGCGCGCCGCTTTGAGGA
GGTATGGCCAGACTTTCTGCGGTGGGTGAACGCAGTGCGGGGAGGAAAAC
CTGTAGTCTTAGTGGCGCATAACGCAGGCTTTGACCATAAAATGCTTATG
TTCGACCTCCGACGATCGAACCTCGATGAACGGGTTTTCAAGGAGGAGAC
GCAGATAGTGGGAATGATGGACACGTTAGCCGTCTTCCGGGGGGACGAGA
TCTGGTCCCGAAGGAGTGGGGATGGTTTACCGATCAAACCCAATACGTTT
CGTCAAGGAGCTCTGTACCGGTACCTGTTGCGCGATGACTTAAAAAATGC
ACACAGCGCCAAGGGCGACGTGCTGGGTTTGGAGGCGCTCCTCAAACACC
CATTTGTAAACAAGAAGTGGCGAAGCGCGGGTTCAGCACATGTCTTGGAA
CTAGGGGGCTGGAGGGATGAGAGAGCCACTGAAGAGGTTAAACATAGGCT
ATCAATACCTTTGATGGTGGCAAAGGTGGCAAAGTAA

protein sequence of rna6399

>rna6399-protein ID=rna6399-protein|Name=rna6399|organism=Nannochloropsis gaditana|type=polypeptide|length=536bp
MVVALRGGTLRPSCSSSCFFPARKRLLARVLLLFILAPFLQAHMPYGISV
AAGSRWLSLGNAQLSVHSRNDLTTLILRSSGKGGYSRRAYHQVSGALCFI
SVRPRPASLPPSTPRRIKGCVSPIHVPGDMTAASPEASFSTASSQTRSTY
PVPSPSRTSAHQHVDPPQQPRRRQRRPGLSLTSPPLSPSTPACRHAPAVH
ALFENVATIKGVGPAAAESLGRMGIHTVLDLLFHLPVGVFDWGQVKLVRD
LQEGDTATVAVRVVGHTEPEGRRPLTIHCLDSEGSPLDLLFFLYKRDLRH
FYLRRFQEGSVHRLQGKVARAKYGDKSLCMSHPEAVKMDGQRRDNVTVEP
IYRLTQGLNANKLRDFLREALRTFQPAPAPASLAPPATAGHPQPLFSDWL
KDSFREDKCWPTFHEALLRVHNPSCVEDVHSSSKARQRLAFDELLATQLP
TALRRAVERKNAVTAASSALVSSFSSISSSLVCAVGGDGHLTGPLIQQLP
FQMTAGQKRTVNEIWADMASKHGRMVRLLQGDVGTG

mRNA from alignment at CM002468.1:430080..431878-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6399 ID=rna6399|Name=rna6399|organism=Nannochloropsis gaditana|type=mRNA|length=1799bp|location=Sequence derived from alignment at CM002468.1:430080..431878- (Nannochloropsis gaditana)
TAACCTGCCAAGCCTGGTGCCGGGAGTCGATTGCCAATCTCGTTTCTAAG
TATCTAATTTTCTTCGCTTTTCTTCTTCAACCCTCTCAAATTCAAGCACA
GGAATCCATCAAATGGAACAAAGTTCTGCCTGGCTAGACTTTCGCCACAA
GCACTAGGCATCTTCCTAGAAGTTTATTCGATCCATTTTTATGGTGGTTG
CATTACGCGGGGGAACGCTTCGTCCCAGCTGCTCGAGCTCTTGTTTCTTT
CCAGCAAGAAAGAGGCTTCTGGCGAGGGTTCTTCTCCTTTTCATCCTGGC
CCCTTTCCTGCAAGCACACATGCCTTACGGTATAAGTGTGGCTGCAGGCA
GTAGATGGCTGTCCCTTGGTAATGCACAACTGTCTGTGCACTCTCGCAAT
GACCTCACGACGCTTATACTTCGTAGTAGCGGCAAAGGGGGATATTCTCG
CCGGGCTTACCACCAAGTTTCAGGAGCCTTGTGCTTCATTTCCGTAAGGC
CTCGCCCAGCTTCCCTGCCGCCATCGACCCCACGGCGAATAAAGGGGTGC
GTGTCCCCCATTCATGTGCCCGGTGACATGACGGCCGCCTCTCCCGAAGC
TTCCTTTTCCACCGCATCTTCCCAGACACGATCGACCTATCCGGTTCCAT
CACCCTCGCGGACATCTGCCCACCAGCATGTGGATCCGCCGCAGCAACCT
CGACGTCGTCAACGCAGACCTGGCCTTTCTCTGACCTCCCCTCCCCTATC
GCCGTCCACGCCTGCCTGTCGTCACGCCCCTGCAGTGCACGCACTGTTCG
AGAACGTGGCGACCATCAAAGGGGTCGGCCCCGCGGCCGCCGAGTCCTTG
GGAAGGATGGGCATTCACACGGTGCTCGACCTCCTCTTCCACCTGCCCGT
CGGCGTCTTCGACTGGGGCCAGGTCAAGCTCGTCCGCGACCTCCAGGAGG
GGGACACGGCCACGGTGGCGGTCCGCGTGGTCGGGCACACGGAACCCGAG
GGCCGCCGGCCCCTGACCATCCACTGCCTCGACTCGGAGGGCTCCCCTCT
CGACCTCCTCTTCTTCCTCTACAAGCGCGACCTGCGTCACTTTTATCTCC
GGCGGTTCCAGGAAGGAAGCGTGCACCGACTCCAGGGCAAGGTGGCTAGA
GCCAAATACGGAGACAAGAGCCTGTGCATGTCCCATCCGGAGGCCGTCAA
GATGGACGGACAGCGCCGCGATAATGTGACGGTGGAGCCCATTTATCGCC
TGACCCAGGGGCTGAACGCCAACAAGCTCCGGGACTTCCTGCGAGAGGCG
CTGCGGACTTTCCAGCCAGCCCCTGCGCCTGCGTCGCTTGCCCCTCCTGC
CACGGCGGGTCACCCTCAGCCCCTGTTTTCCGACTGGCTCAAGGACAGCT
TTCGCGAGGACAAGTGCTGGCCAACCTTCCATGAGGCGCTGCTCCGGGTC
CACAATCCCTCGTGCGTGGAGGACGTGCACTCGAGCAGCAAAGCCCGGCA
ACGATTGGCCTTCGACGAGCTCCTTGCCACTCAGCTGCCGACCGCCTTGC
GTAGGGCGGTAGAGCGAAAAAATGCCGTCACAGCGGCTAGCAGTGCACTC
GTATCATCGTTCTCGTCTATATCCTCCAGCCTTGTCTGCGCAGTGGGCGG
AGACGGCCACCTGACGGGGCCCTTGATCCAGCAGTTACCCTTCCAAATGA
CCGCGGGGCAGAAACGCACAGTCAACGAGATTTGGGCGGACATGGCCTCC
AAACACGGACGAATGGTACGCCTCTTGCAAGGGGACGTGGGAACAGGAA

Coding sequence (CDS) from alignment at CM002468.1:430080..431878-

>rna6399 ID=rna6399|Name=rna6399|organism=Nannochloropsis gaditana|type=CDS|length=1609bp|location=Sequence derived from alignment at CM002468.1:430080..431878- (Nannochloropsis gaditana)
ATGGTGGTTGCATTACGCGGGGGAACGCTTCGTCCCAGCTGCTCGAGCTC
TTGTTTCTTTCCAGCAAGAAAGAGGCTTCTGGCGAGGGTTCTTCTCCTTT
TCATCCTGGCCCCTTTCCTGCAAGCACACATGCCTTACGGTATAAGTGTG
GCTGCAGGCAGTAGATGGCTGTCCCTTGGTAATGCACAACTGTCTGTGCA
CTCTCGCAATGACCTCACGACGCTTATACTTCGTAGTAGCGGCAAAGGGG
GATATTCTCGCCGGGCTTACCACCAAGTTTCAGGAGCCTTGTGCTTCATT
TCCGTAAGGCCTCGCCCAGCTTCCCTGCCGCCATCGACCCCACGGCGAAT
AAAGGGGTGCGTGTCCCCCATTCATGTGCCCGGTGACATGACGGCCGCCT
CTCCCGAAGCTTCCTTTTCCACCGCATCTTCCCAGACACGATCGACCTAT
CCGGTTCCATCACCCTCGCGGACATCTGCCCACCAGCATGTGGATCCGCC
GCAGCAACCTCGACGTCGTCAACGCAGACCTGGCCTTTCTCTGACCTCCC
CTCCCCTATCGCCGTCCACGCCTGCCTGTCGTCACGCCCCTGCAGTGCAC
GCACTGTTCGAGAACGTGGCGACCATCAAAGGGGTCGGCCCCGCGGCCGC
CGAGTCCTTGGGAAGGATGGGCATTCACACGGTGCTCGACCTCCTCTTCC
ACCTGCCCGTCGGCGTCTTCGACTGGGGCCAGGTCAAGCTCGTCCGCGAC
CTCCAGGAGGGGGACACGGCCACGGTGGCGGTCCGCGTGGTCGGGCACAC
GGAACCCGAGGGCCGCCGGCCCCTGACCATCCACTGCCTCGACTCGGAGG
GCTCCCCTCTCGACCTCCTCTTCTTCCTCTACAAGCGCGACCTGCGTCAC
TTTTATCTCCGGCGGTTCCAGGAAGGAAGCGTGCACCGACTCCAGGGCAA
GGTGGCTAGAGCCAAATACGGAGACAAGAGCCTGTGCATGTCCCATCCGG
AGGCCGTCAAGATGGACGGACAGCGCCGCGATAATGTGACGGTGGAGCCC
ATTTATCGCCTGACCCAGGGGCTGAACGCCAACAAGCTCCGGGACTTCCT
GCGAGAGGCGCTGCGGACTTTCCAGCCAGCCCCTGCGCCTGCGTCGCTTG
CCCCTCCTGCCACGGCGGGTCACCCTCAGCCCCTGTTTTCCGACTGGCTC
AAGGACAGCTTTCGCGAGGACAAGTGCTGGCCAACCTTCCATGAGGCGCT
GCTCCGGGTCCACAATCCCTCGTGCGTGGAGGACGTGCACTCGAGCAGCA
AAGCCCGGCAACGATTGGCCTTCGACGAGCTCCTTGCCACTCAGCTGCCG
ACCGCCTTGCGTAGGGCGGTAGAGCGAAAAAATGCCGTCACAGCGGCTAG
CAGTGCACTCGTATCATCGTTCTCGTCTATATCCTCCAGCCTTGTCTGCG
CAGTGGGCGGAGACGGCCACCTGACGGGGCCCTTGATCCAGCAGTTACCC
TTCCAAATGACCGCGGGGCAGAAACGCACAGTCAACGAGATTTGGGCGGA
CATGGCCTCCAAACACGGACGAATGGTACGCCTCTTGCAAGGGGACGTGG
GAACAGGAA

Synonyms

Publications