rna6397, rna6397 (mRNA) Nannochloropsis gaditana

Overview
Namerna6397
Unique Namerna6397
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1130
Alignment locationCM002468.1:424323..425848 -

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Properties
Property NameValue
ProductAmino acid transporter, transmembrane
Orig transcript idgnl|cribi|Naga_100047g43.6081.mrna
Orig protein idgnl|cribi|Naga_100047g43.6081
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:424323..425848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100047g43gene6181Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6397rna6397-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24318.1cds6382Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6397 ID=rna6397|Name=rna6397|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp
GAACACATCTCCCCGTCAGCGGCTTTTACACAACCCAGAACAGTGCCAAA
ACGATCTTTCCGAAATAAATCCACACGTTTTTGTACCGACGATGTCACCA
GGGAATCGTTCACTGACACAACATTGCTAATATGTACCCTCGCGTCCCCA
TCTCTCAGGTGGTCATCATCGTCGTCGTCATCTTCATTGTCATTGTCACC
GTCATCTCCGTTTTCATCGGTCAACTCCGCATTTCAGCGTATACATTGCT
GTGCTCAGGACTGACAGGGATTCTCCTGTCATCATTTGAGTGCCGAGTGA
CGTTAATGACGACCACCGCGGCAGGCCTTGTGCGCTCCACTCCGTCGATG
TTTGAATCGAGAGACCCGTTGGACCGAGGAGGGAGGATACTCATGCATTT
CCCCTGGAGAATCGCCGTCACATGGCCTGTATAGCTATGAAAGTACGCAT
TTGAGCAGTCTAAACTGCTTTGTTTAATACCTACCGTTCAAATCTTGTGC
CAATCAAACTTACTTTTTACCACATTCAGTTCCACAAAAATTGTATAGAC
TCCCCACATCAGATACGTTTGCATTGTGTGCATCATCTGCCACAGAGATA
AGCTGATCCATACATTCCTCCGAGACCGCACTACATTCTTCAGGAAGCAC
GGAGTTGGTGGTGTTAGCTCTCCAAGTCAGTGTGCCCGTGGTCGCTGTGT
TTGTAGAGTCACTTGCTTGTTCATGCTGCCACTGTCGGAGACGAGACGCC
GTATGTTTCCGGATCAAGAGGAGGCTTGACAGAAGCGTCAAACGCCAAAA
AAGTGCCATTTGCTCGAACGGGTGCCATGAAAGGTTGATTTGCGGAGTCA
AGATCAGAAAGCGGGGATAACATGTATTTTTGAGAAATGTACGAAATCAA
TTTTCGATATGCCACATGTCTTGTACTTTGTTCTGTCAACCCAGCTTATA
AGTGCAACATAATTTTTCGTGTTCGTTGAGGCGGAAAATGCGCCTGGAAG
AAGGTTCGTCGTGTTCGTGTGAGTGTTGCACCTGGCTACGGGCACGTCAT
GCAAAATGATCCACACCACTTATGCAGAGCTGCCAGCGGCCTTGATCCCG
CACCCGAAAGAAATTCAGAATGTAACCTCC
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protein sequence of rna6397

>rna6397-protein ID=rna6397-protein|Name=rna6397|organism=Nannochloropsis gaditana|type=polypeptide|length=464bp
MMIQEDNDRIVHTEFPLSSRKKRQRAAKHSINVLKSFLGSNYLSIPFAVA
AAGSLFGPLLIAIIAFISGFGCLLLVRIRKDLLRQHRQIDVNGDGTCVVE
TYAQVAGVVLGSAGYYVVEAFLILTQAGYCIGYVIYMSTALRQFTGASLS
QQVITFGLLFPSLVCLCLVPDLKHFLPFSFASNIALLMGFLAIIAACISH
ARAIGTFDLSWGISDIHKIPLAFGNIVASFEGIGTILSVEGSMAKDQSRE
TYPPLLRKTLLLVTLLFSLFGIVGLGAYGEELCSVILNNISRGAYADAAR
GCLIVGLFFTYGFQMYPVFEMIDLRLFPNEGPDHASFSEVSPLLTTGDNH
SLDISWESCGNDLRRHRMKMTAKYVGVRVGLVLTTSIIAYFVPEFELLVA
LIGSVGAGMLAFVVPGILGLVLYRNSALFYHKLSYISLIILGVVGGSIGA
AYALHDLIQGHSQC
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mRNA from alignment at CM002468.1:424323..425848-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6397 ID=rna6397|Name=rna6397|organism=Nannochloropsis gaditana|type=mRNA|length=1526bp|location=Sequence derived from alignment at CM002468.1:424323..425848- (Nannochloropsis gaditana)
ATGATGATTCAAGAGGACAACGATCGAATAGTCCATACTGAGTTCCCTTT
GTCATCCCGCAAGAAGCGACAGAGAGCGGCTAAGCACAGTATAAATGTGC
TCAAATCTTTTCTTGGATCAAACTATTTGTCGATACCCTTCGCAGTTGCT
GCCGCAGGATCGCTTTTTGGGCCCCTTTTAATTGCGATAATAGCCTTCAT
CAGTGGCTTCGGATGCCTTCTACTCGTCCGGATTCGGAAGGACTTACTGC
GGCAGCACCGACAGATTGATGTGAACGGAGATGGTACATGTGTTGTTGAA
ACATATGCGCAAGTAGCAGGAGTGGTGCTGGGGAGTGCTGGTTATTACGT
GGTCGAGGCATTCTTGATACTCACACAAGCGGGATACTGTATCGGATATG
TTATCTACATGAGCACGGCACTGCGTCAGTTTACTGGAGCATCTTTGTCG
CAACAAGTCATTACATTTGGCCTCCTCTTTCCATCGCTAGTCTGCCTTTG
TCTTGTTCCAGATTTGAAGCACTTCCTACCGTTTAGTTTTGCAAGCAACA
TAGCCTTGCTAATGGGATTTCTTGCCATAATTGCTGCCTGTATTTCACAC
GCCCGTGCCATTGGCACTTTCGACTTGTCCTGGGGGATATCAGACATCCA
CAAGATTCCTTTAGCTTTTGGAAATATTGTAGCATCCTTTGAGGGCATCG
GCACCATTCTCAGCGTGGAGGGAAGCATGGCGAAAGATCAATCGCGGGAA
ACTTATCCGCCGTTGCTTCGAAAGACATTGCTCTTGGTCACGTTGCTTTT
CTCTCTTTTTGGCATAGTGGGCCTTGGCGCATACGGAGAAGAGCTGTGTA
GCGTGATTCTTAACAATATCTCCAGGGGCGCTTACGCGGACGCTGCTCGA
GGTTGTTTAATCGTCGGATTGTTCTTCACATGTAAGTTAGTTCGGGTTGA
GTACAGCTGGGAGTCGCGGGGAAGTCTCGTCACATATGGGGTGGGAGTGC
ATTTTCATACCCGCCTTTGCGTGGTCCGTATATCTGACTTTTCAACATGT
GTCTTCGCGCAGATGGCTTTCAAATGTACCCAGTCTTCGAAATGATCGAT
CTACGTCTCTTCCCCAACGAGGGGCCGGACCATGCTTCCTTTTCAGAGGT
TTCTCCTCTGCTGACAACTGGCGACAACCATTCACTTGACATATCGTGGG
AGTCTTGTGGAAACGATCTGAGACGTCACAGGATGAAAATGACGGCAAAG
TACGTAGGGGTGCGAGTAGGTTTGGTCCTAACAACCTCGATAATTGCCTA
CTTCGTGCCTGAATTCGAGTTGCTCGTCGCTTTGATTGGATCGGTTGGCG
CGGGAATGCTAGCATTTGTGGTGCCTGGGATTTTAGGACTGGTCTTATAC
CGCAACTCAGCACTTTTCTACCATAAATTGAGCTACATTTCATTGATAAT
TTTAGGTGTGGTTGGCGGAAGTATAGGTGCTGCATATGCATTGCATGACC
TTATACAGGGGCATTCTCAATGTTGA
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Coding sequence (CDS) from alignment at CM002468.1:424323..425848-

>rna6397 ID=rna6397|Name=rna6397|organism=Nannochloropsis gaditana|type=CDS|length=2790bp|location=Sequence derived from alignment at CM002468.1:424323..425848- (Nannochloropsis gaditana)
ATGGCTTTCAAATGTACCCAGTCTTCGAAATGATCGATCTACGTCTCTTC
CCCAACGAGGGGCCGGACCATGCTTCCTTTTCAGAGGTTTCTCCTCTGCT
GACAACTGGCGACAACCATTCACTTGACATATCGTGGGAGTCTTGTGGAA
ACGATCTGAGACGTCACAGGATGAAAATGACGGCAAAGTACGTAGGGGTG
CGAGTAGGTTTGGTCCTAACAACCTCGATAATTGCCTACTTCGTGCCTGA
ATTCGAGTTGCTCGTCGCTTTGATTGGATCGGTTGGCGCGGGAATGCTAG
CATTTGTGGTGCCTGGGATTTTAGGACTGGTCTTATACCGCAACTCAGCA
CTTTTCTACCATAAATTGAGCTACATTTCATTGATAATTTTAGGTGTGGT
TGGCGGAAGTATAGGTGCTGCATATGCATTGCATGACCTTATACAGGGGC
ATTCTCAATGTTGAATGATGATTCAAGAGGACAACGATCGAATAGTCCAT
ACTGAGTTCCCTTTGTCATCCCGCAAGAAGCGACAGAGAGCGGCTAAGCA
CAGTATAAATGTGCTCAAATCTTTTCTTGGATCAAACTATTTGTCGATAC
CCTTCGCAGTTGCTGCCGCAGGATCGCTTTTTGGGCCCCTTTTAATTGCG
ATAATAGCCTTCATCAGTGGCTTCGGATGCCTTCTACTCGTCCGGATTCG
GAAGGACTTACTGCGGCAGCACCGACAGATTGATGTGAACGGAGATGGTA
CATGTGTTGTTGAAACATATGCGCAAGTAGCAGGAGTGGTGCTGGGGAGT
GCTGGTTATTACGTGGTCGAGGCATTCTTGATACTCACACAAGCGGGATA
CTGTATCGGATATGTTATCTACATGAGCACGGCACTGCGTCAGTTTACTG
GAGCATCTTTGTCGCAACAAGTCATTACATTTGGCCTCCTCTTTCCATCG
CTAGTCTGCCTTTGTCTTGTTCCAGATTTGAAGCACTTCCTACCGTTTAG
TTTTGCAAGCAACATAGCCTTGCTAATGGGATTTCTTGCCATAATTGCTG
CCTGTATTTCACACGCCCGTGCCATTGGCACTTTCGACTTGTCCTGGGGG
ATATCAGACATCCACAAGATTCCTTTAGCTTTTGGAAATATTGTAGCATC
CTTTGAGGGCATCGGCACCATTCTCAGCGTGGAGGGAAGCATGGCGAAAG
ATCAATCGCGGGAAACTTATCCGCCGTTGCTTCGAAAGACATTGCTCTTG
GTCACGTTGCTTTTCTCTCTTTTTGGCATAGTGGGCCTTGGCGCATACGG
AGAAGAGCTGTGTAGCGTGATTCTTAACAATATCTCCAGGGGCGCTTACG
CGGACGCTGCTCGAGGTTGTTTAATCGTCGGATTGTTCTTCACATATGGC
TTTCAAATGTACCCAGTCTTCGAAATGATCGATCTACGTCTCTTCCCCAA
CGAGGGGCCGGACCATGCTTCCTTTTCAGAGGTTTCTCCTCTGCTGACAA
CTGGCGACAACCATTCACTTGACATATCGTGGGAGTCTTGTGGAAACGAT
CTGAGACGTCACAGGATGAAAATGACGGCAAAGTACGTAGGGGTGCGAGT
AGGTTTGGTCCTAACAACCTCGATAATTGCCTACTTCGTGCCTGAATTCG
AGTTGCTCGTCGCTTTGATTGGATCGGTTGGCGCGGGAATGCTAGCATTT
GTGGTGCCTGGGATTTTAGGACTGGTCTTATACCGCAACTCAGCACTTTT
CTACCATAAATTGAGCTACATTTCATTGATAATTTTAGGTGTGGTTGGCG
GAAGTATAGGTGCTGCATATGCATTGCATGACCTTATACAGGGGCATTCT
CAATGTTGAATGATGATTCAAGAGGACAACGATCGAATAGTCCATACTGA
GTTCCCTTTGTCATCCCGCAAGAAGCGACAGAGAGCGGCTAAGCACAGTA
TAAATGTGCTCAAATCTTTTCTTGGATCAAACTATTTGTCGATACCCTTC
GCAGTTGCTGCCGCAGGATCGCTTTTTGGGCCCCTTTTAATTGCGATAAT
AGCCTTCATCAGTGGCTTCGGATGCCTTCTACTCGTCCGGATTCGGAAGG
ACTTACTGCGGCAGCACCGACAGATTGATGTGAACGGAGATGGTACATGT
GTTGTTGAAACATATGCGCAAGTAGCAGGAGTGGTGCTGGGGAGTGCTGG
TTATTACGTGGTCGAGGCATTCTTGATACTCACACAAGCGGGATACTGTA
TCGGATATGTTATCTACATGAGCACGGCACTGCGTCAGTTTACTGGAGCA
TCTTTGTCGCAACAAGTCATTACATTTGGCCTCCTCTTTCCATCGCTAGT
CTGCCTTTGTCTTGTTCCAGATTTGAAGCACTTCCTACCGTTTAGTTTTG
CAAGCAACATAGCCTTGCTAATGGGATTTCTTGCCATAATTGCTGCCTGT
ATTTCACACGCCCGTGCCATTGGCACTTTCGACTTGTCCTGGGGGATATC
AGACATCCACAAGATTCCTTTAGCTTTTGGAAATATTGTAGCATCCTTTG
AGGGCATCGGCACCATTCTCAGCGTGGAGGGAAGCATGGCGAAAGATCAA
TCGCGGGAAACTTATCCGCCGTTGCTTCGAAAGACATTGCTCTTGGTCAC
GTTGCTTTTCTCTCTTTTTGGCATAGTGGGCCTTGGCGCATACGGAGAAG
AGCTGTGTAGCGTGATTCTTAACAATATCTCCAGGGGCGCTTACGCGGAC
GCTGCTCGAGGTTGTTTAATCGTCGGATTGTTCTTCACAT
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Synonyms
Publications