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Properties
| Property Name | Value |
|---|
| Product | aspartyl-trna synthetase |
| Orig transcript id | gnl|cribi|Naga_100047g38.6072.mrna |
| Orig protein id | gnl|cribi|Naga_100047g38.6072 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:415073..417713 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6393 ID=rna6393|Name=rna6393|organism=Nannochloropsis gaditana|type=mRNA|length=3130bp
CTCCATTGTTCGGGTTTACACTACGAGCCTTTACCGCCGATTTGATGTGA
TATTGACGGGCAGCGTGAGCAATACTGTCATGCGTGGCGTGGGGTTTCGA
TTTGCATCATCAACATGGTCCCGCGAAAAATAGGAATGTCGCCGTCGGTC
TGTTCAAAAGGAAGCTGATCTGCCCATATCGCTTTTAAACACAGGGTTCC
TTGAGAATAAAAAGTAAAACACGCACGCTCAGTTCCGGTCAAGTTTATGA
TAGCAAGTGCTGTCCACATTGACGATAATTGCGAGTGCAATGGAGGTAGA
TCCTAGTTTTCATACCTCAGGCATCGCGGAGAGATGCTGTAGGCTTGAAA
GGACCGTCGTCCGTGCTCTCATGCTTGTTCTGCTATTTAGTGTGCTTTCC
ACCACCGCATCCACCGATGCGGCTGCCACCATCGAGGATAAGGCTACCAC
AATATCTTCAAATGGACCTGGAGGCAAAGGCGGCCCTGTCCAAGGCCCCA
AAGCCGCTGGCGGGGAGAAGAACAAGCCCGGGAAGGAGAGCCACCACAAC
CTCGACCATCTCGCCAAAGCCAAACGCCTTGCCATTATCTTCGGGCGTTC
CAAAAAGGGGGACGCCGACTTAGACAATCTTACGCGATCGTTCACTTGGG
AGCAATTCGGGCCGACTTACTGTGAAGTCGGGCGAGTTTTTACTGAAGGG
GTGGCAGGGGAGGACGGGTCCGTGACGGTGGCTCGAAATTTGACGCGAGG
ACTAGACTACCTGGCACGCGCCGCCCATAAGTATGGCTATCCTCACGCAC
AACACCGTTTGGCCGTCGCCCACGTGACGGGCCTATACGGCGAGCCCCCG
CCACTGCCCGTCGCCCTCCCCGATGCCACGGAGGCAGAGGAGATTGGCTC
AGGCGGCGAGGCGGCAGCCTTGCTTCTTAACCACTTCGCTGCGATGGCGG
GAGACGTTGCAGGATCTATGGCTATGGGTTTCCGGTACTTGTATGGACAT
GGCGTGGCTATAGATTGTGAGAAGGCCGCCTTGTACTACGAGGTGGCCGC
GAATGTCGCCGTGGAGGAGTTGGGGAGGCTGAAGGTGTTGCCGCCCAATG
AGCGGGTGCGCCTCTTCGACGGGAACCTGGCGGGGGTAACATCTCAACGA
AAGGCGGCCATGGAGGCAGATCAGCAGCTGGTCGACTATTACAAGCACAC
TGCCGAGAAAGGCGACGTGAGCGCGCAGGTCGCTCTGGGCAAGCTCTACT
TCCATGGCTCCCAAGGAGTGCCTCAAAACCTGGCCAAGGCCGCCGTATTT
CTTGAGGAGGCCGCCCGGGCAGGGGATCCCCTGGCTGCGGGCAGCATAGG
GCACATGTACCTGTTGGGGGTGGGCGTCCGGCAGAACAACGAGACCGCTC
GTCGGTTTTTTGTGCGCGGACAAGAGTCAGGGGACGCAGCCAGTCTGAAC
GGGCTGGGGCATATGTACATGTACGGAATGGGCGTGGAAAAAAATGTGGA
GAAGGCGATCAAACTCCTGCAAAGGGCAGCACATGAGAAGGGATACTCGG
AGGCCTTCTACAATCTGGGCTTGATCTACGCAGGCCTTGTAGGGGAGAAA
GAGGAGGAAAAAGAGAAGCAAGGCGAGGGGGACAGAAGCCGGAAATCGAC
AAGTGGAGGAGAGTCGGATGCACGCGCAGACCGAGAGGAGGAACCAGACT
CCATTTCACTGTCCGCGAAGCATTTACAGGAACTGAGAGAGGACCCTTTG
CTCGCGGGATTGCCCCAAGAAATGTTCGACAAGCTCGCAGACATCACCCT
ACAGGCTGCCGACTTTGAGAAGGTCGCAAGAGAGACATTGGAGAAAAAGG
GAGACAAGGGAATTGAAAGCAAGTCGGGTCGCTTGACAGCATCCGTTACG
TCAGCAAAGGAACTTGGGGAGCGTAAGGGGACCAGGAGCCTCGCGAAGGC
TCTGAAATACTTCTCCCTGGCCGCACAGACCGGGCACATGGGCGCCTTGC
ACAAGCTGGGCCAGATGTCCGCCCAAGGCATCGCCACGCCCCGCGCCTGC
TCCACGGCCGTTCACGCCTTCAAAAGCGTCGCCGAGCGCGGACCTTGGGT
CACTGCCATGAGCAAGGCCCTTGCCCGGCACAAGCGCGGGGACCTCCTTG
GCGCCCTAATCTTGTACATGCACCTGGCTGAGATCGGCTACGAAGTCGCG
CAGTCCAACGCCGCGCTTCTCTTGGAGGAGGGGACCTGCGGGATGCTCTC
TCCGACAGCCTGCCAGGCGCTTGCAGTCCGATATTATCGCCACGCCTCGC
GGCAAGGCAACGCGGAAGCGAGCCTGAAAGTGGGAGATGCTCATTATTAC
GGTACCGCTGGTCTCCCCGTCGACTTTTCGCGCGCGGCACGTTACTACCA
AACGGCGGCCGAGCTCCGTCAGCCTCAGGCCATGTTCAACCTGGGGCTCA
TGCACCAGTACGGTGTAGGGCTGAAGCAAGACTTCCACCTGGCCAAGCGA
TTTCTTGACGCCTCTGCGGAAGCCTACCCGGACGCCAAGTGGCCCGTGAA
CCTGGCGCTGGCGGGGCTCTACCTCCACTGGTGGCTCATGGGGGAGGATC
AATCGCTGAGGGAGTCGCCGATCGTGACGACGGCCCCCGGGGTGAGTGTC
CTCGTGGAACACTCGGTCTTAGCAAAGCTGGCGAGGGCCTGGGAGAGGAA
GAAGGAGCAATGGCGACAGGTGTGGGCCGATATGCCAGCCAGTTGGGGGG
GCGGCGCAGGGCGTGCTGGAGCATCCATAGGAGTCGGCAAGGAAGAGGAG
ACATGGAGCTGGCCTCATATTTTAGAAATGCTGTCCGCATTGGACACTCT
GCTAATTGTGGCCCTGTCCTCCGCATTCTTGTACGTAATGCGCCTTCGGG
CAGAGCAACGCGAGGAAATGGCCAGACGTCGAAGAGGGCGGCAGGGGAGT
GAGGGTGGTGTGCCTAGGGTAGCAGACGTGGGAGAGAATACGGTACCTTT
GACAGATTATCAGGAAGAATCAAGGGCTGTAAGATCAGCGGACGAAAATT
TAGATATAGATAGAGAACAACAAGACTGAAGAATGCCTGACGTGAAACAG
GAAGAAGGAAATTAATAGCCAAGAAAGGGT back to topprotein sequence of rna6393 >rna6393-protein ID=rna6393-protein|Name=rna6393|organism=Nannochloropsis gaditana|type=polypeptide|length=606bp
MASKEEIEALIKAKGDEIRQLKAEKSEKDTILAQVALLNELKAKYKETTG
EDFGPPPSSSKKKGEAKKTDGAPACGLKVDPRKAAKEARAAKRAAGGVDQ
ATSTSSNSGGNASDAATSNSGSAPSVPSLESAKYGNLPMVQSLGMTDRVW
GRIDGLSPSRAGQRVLLRGRLHTSRAVGKGVFLLLRQGIATVQAVVYQGP
GVDKGMVKFAGAVPRESVIDLVGTLTEPREPVESATARLVEVQVDELYVV
SAAENVLPFQLEDASRPEASEDPEMPSVGMDNRLNYRWIDTRTAANQAIF
RIQHGVSQLFREFLSERGFVEIHTPKLLGGASESGSSVFTLTYFDQSGCL
AQSPQLYKQMACACGGFEKVFEVGPVFRAEKSFTHRHLCEFTGLDLEMAI
HEHYYEVLELFSDLFIYIFDNLATRFAAELQAVNKQHPFEPLQFCRPSLR
LSFAEGVALLREAGYDASEMEDLDTEKEKALGRIVKEKYKTDFYMMDRYP
LSVRPFYTMPCPDDPTLSNSFDMFIRGEEIVSGAQRIHDVELLGERIDAM
GVPQETLRTYMDAFRHGALPHGGGGIGLERVVMLYLGLKNIRKTSLFPRD
PKRLAP back to topmRNA from alignment at CM002468.1:415073..417713+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6393 ID=rna6393|Name=rna6393|organism=Nannochloropsis gaditana|type=mRNA|length=2641bp|location=Sequence derived from alignment at CM002468.1:415073..417713+ (Nannochloropsis gaditana)
tctctcctcgaTGAGTCCATAAAGATAATCTTCCCTAACTTGAGCAGGCC
CAGGTATTGGCAGCAGTCTTATCGTGCGTCATGCCTCAGAAAAACAGATG
CGGCCCCCTGCTTTTAATGGGCCGTCCGGTCCGAGTGAGCGGTAGCCAAA
TCCTCGCCGTGCCGTCTCCCAGAGAGCTAGCGCCACCATCGACCACACCA
CCCGTCAAGTGAAATATTTGCAAGCGTCTGCAACGATGTTATGCTCGGTG
TTAGCCACTAATTCTTTTCTGTGCCCACTTTTGTGGATTTCATCTTTTGA
GGGACGATCACTCGACATGTCATGTCAGTACCTTTGTACCATCAGTAGTT
ATTGCACTGGTTTTCCATATTAGGTGATATTCGACAATGgccagcaagga
ggaaattgAAGCGCTCATCAAGGCAAAAGGGGACGAAATCCGGCAGCTCA
AAGCTGAAAAATCGGAAAAGGATACAATTCTGGCTCAGGTTGCGCTCTTA
AATGTGAGTTCGATGCGAGCTTCGTACTATCTCTCATATGCTATGCCACA
TTTTTGCCAGCGTAATCAATGTACACATTCTCACGATATCACATCATTAT
GTGTTGCATTTCCATTCAAAAGAAAGTATTAAGCAACGGCATTCTTGTCC
CGTCAGAGAGCCAGATCCAAGAACCATAATtactctcttctttcttgaaA
CTCCCTCGCAGGAGCTGAAGGCGAAGTACAAAGAGACAACAGGCGAAGAC
TTtgggccgcctccatcttcgagcaagaagaagggggaagcaaAGAAAAC
TGATGGCGCACCTGCGTGTGGATTAAAAGTGGACCCTCGTAAAGCGGCCA
AAGAGGCCAGGGCTGCGAAACGAGCCGCCGGGGGTGTGGATCAGGCTact
tccacgtcctcaaaTAGCGGGGGAAACGCCTCGGATGCTGCAACCTCGAA
TAGTGGCTCTGCTCCATCGGTGCCAAGCCTTGAAAGCGCAAAGTACGGGA
ACTTGCCTATGGTCCAGTCGCTTGGCATGACTGACAGGGTCTGGGGCCGC
ATCGACGGCCTCTCGCCCTCGCGGGCTGGGCAGCGGGTGCTTCTCCGTGG
CCGGCTGCACACCTCTCGTGCCGTAGGGAAGGGGGTCTTCCTACTACTCC
GACAAGGCATCGCAACGGTGCAGGCAGTTGTCTACCAGGGCCCGGGGGTG
GACAAGGGCATGGTCAAGTTCGCGGGGGCGGTGCCCCGGGAGTCCGTCAT
CGACCTGGTCGGGACCTTGACAGAGCCTAGAGAGCCCGTGGAGAGCGCAA
CGGCCAGGCTGGTGGAAGTGCAGGTCGATGAGCTGTACGTGGTCAGCGCT
GCCGAGAACGTCTTGCCCTTCCAGCTCGAAGACGCCTCCCGGCCCGAGGC
GAGCGAGGACCCGGAGATGCCCTCGGTAGGGATGGACAACAGGCTGAACT
ACAGGTGGATAGATACAAGGACGGCAGCCAATCAAGCCATCTTCCGTATT
CAGCACGGCGTTTCTCAGCTCTTCCGGGAATTCCTCTCCGAGCGCGGCTT
CGTGGAGATCCACACGCCCAAGCTGCTGGGCGGTGCCTCCGAGTCAGGAT
CCTCGGTTTTCACGCTCACCTACTTCGACCAAAGTGGGTGCTTGGCGCAG
TCTCCGCAGCTCTATAAGCAAATGGCCTGTGCGTGCGGAGGGTTCGAGAA
GGTCTTCGAGGTGGGTCCAGTCTTTAGAGCGGAGAAAAGCTTCACGCACC
GGCATCTGTGCGAGTTCACGGGCCTTGACTTGGAGATGGCCATCCACGAG
CATTACTACGAAGTCCTCGAGTTATTCTCCGACCTCTTCATTTATATCTT
TGACAACCTCGCCACTCGCTTCGCGGCTGAGCTGCAGGCTGTCAACAAAC
AGCATCCCTTCGAGCCCCTTCAATTTTGCCGACCCTCTCTTCGGCTGTCG
TTtgcggagggggtggctcTCCTTCGAGAAGCTGGCTATGACGCCAGCGA
GATGGAGGACCTggacacggagaaggagaaggcgctgggCAGGATAGTGA
AGGAGAAGTATAAGACGGACTTCTACATGATGGACCGGTACCCGCTCTCT
GTGCGGCCCTTCTACACGATGCCGTGTCCGGACGACCCCACGCTCTCCAA
TTCCTTCGACATGTTCATCCGAGGCGAGGAGATCGTGTCAGGGGCCCAAC
GGATCCATGACGTGGAGCTCCTGGGAGAGCGCATCGATGCCATGGGAGTG
CCTCAGGAGACGCTGCGGACATACATGGATGCCTTTCGACACGGGGCGCT
GCcgcatgggggagggggcataGGTCTCGAGAGGGTTGTGATGCTCTACC
TGGGCCTGAAGAACATCAGGAAGACAAGCCTTTTCCCTCGAGATCCCAAG
CGATTGGCACCCTAGGATGTTCGAACACGAGTAGTGTCAAAAGTGAGCTA
ATGAAGTAGCCACAGCCCGCCTATGTTTGAGATAAAAAGGTGCAGCGCAA
GAcggtgggggaaagaaaaaaaaatctcGACCCGAATGGAGGTATTTTCC
CCTCATTGGGAAAATACTGTATATTCGACAGGATGTAGACATGATTGACC
GATAATTCACCGTTTCTATGAAGCAATGATTTGGTGCATGT back to topCoding sequence (CDS) from alignment at CM002468.1:415073..417713+ >rna6393 ID=rna6393|Name=rna6393|organism=Nannochloropsis gaditana|type=CDS|length=3642bp|location=Sequence derived from alignment at CM002468.1:415073..417713+ (Nannochloropsis gaditana)
ATGgccagcaaggaggaaattgAAGCGCTCATCAAGGCAAAAGGGGACGA
AATCCGGCAGCTCAAAGCTGAAAAATCGGAAAAGGATACAATTCTGGCTC
AGGTTGCGCTCTTAAATGAGCTGAAGGCGAAGTACAAAGAGACAACAGGC
GAAGACTTtgggccgcctccatcttcgagcaagaagaagggggaagcaaA
GAAAACTGATGGCGCACCTGCGTGTGGATTAAAAGTGGACCCTCGTAAAG
CGGCCAAAGAGGCCAGGGCTGCGAAACGAGCCGCCGGGGGTGTGGATCAG
GCTacttccacgtcctcaaaTAGCGGGGGAAACGCCTCGGATGCTGCAAC
CTCGAATAGTGGCTCTGCTCCATCGGTGCCAAGCCTTGAAAGCGCAAAGT
ACGGGAACTTGCCTATGGTCCAGTCGCTTGGCATGACTGACAGGGTCTGG
GGCCGCATCGACGGCCTCTCGCCCTCGCGGGCTGGGCAGCGGGTGCTTCT
CCGTGGCCGGCTGCACACCTCTCGTGCCGTAGGGAAGGGGGTCTTCCTAC
TACTCCGACAAGGCATCGCAACGGTGCAGGCAGTTGTCTACCAGGGCCCG
GGGGTGGACAAGGGCATGGTCAAGTTCGCGGGGGCGGTGCCCCGGGAGTC
CGTCATCGACCTGGTCGGGACCTTGACAGAGCCTAGAGAGCCCGTGGAGA
GCGCAACGGCCAGGCTGGTGGAAGTGCAGGTCGATGAGCTGTACGTGGTC
AGCGCTGCCGAGAACGTCTTGCCCTTCCAGCTCGAAGACGCCTCCCGGCC
CGAGGCGAGCGAGGACCCGGAGATGCCCTCGGTAGGGATGGACAACAGGC
TGAACTACAGGTGGATAGATACAAGGACGGCAGCCAATCAAGCCATCTTC
CGTATTCAGCACGGCGTTTCTCAGCTCTTCCGGGAATTCCTCTCCGAGCG
CGGCTTCGTGGAGATCCACACGCCCAAGCTGCTGGGCGGTGCCTCCGAGT
CAGGATCCTCGGTTTTCACGCTCACCTACTTCGACCAAAGTGGGTGCTTG
GCGCAGTCTCCGCAGCTCTATAAGCAAATGGCCTGTGCGTGCGGAGGGTT
CGAGAAGGTCTTCGAGGTGGGTCCAGTCTTTAGAGCGGAGAAAAGCTTCA
CGCACCGGCATCTGTGCGAGTTCACGGGCCTTGACTTGGAGATGGCCATC
CACGAGCATTACTACGAAGTCCTCGAGTTATTCTCCGACCTCTTCATTTA
TATCTTTGACAACCTCGCCACTCGCTTCGCGGCTGAGCTGCAGGCTGTCA
ACAAACAGCATCCCTTCGAGCCCCTTCAATTTTGCCGACCCTCTCTTCGG
CTGTCGTTtgcggagggggtggctcTCCTTCGAGAAGCTGGCTATGACGC
CAGCGAGATGGAGGACCTggacacggagaaggagaaggcgctgggCAGGA
TAGTGAAGGAGAAGTATAAGACGGACTTCTACATGATGGACCGGTACCCG
CTCTCTGTGCGGCCCTTCTACACGATGCCGTGTCCGGACGACCCCACGCT
CTCCAATTCCTTCGACATGTTCATCCGAGGCGAGGAGATCGTGTCAGGGG
CCCAACGGATCCATGACGTGGAGCTCCTGGGAGAGCGCATCGATGCCATG
GGAGTGCCTCAGGAGACGCTGCGGACATACATGGATGCCTTTCGACACGG
GGCGCTGCcgcatgggggagggggcataGGTCTCGAGAGGGTTGTGATGC
TCTACCTGGGCCTGAAGAACATCAGGAAGACAAGCCTTTTCCCTCGAGAT
CCCAAGCGATTGGCACCCTAGATGgccagcaaggaggaaattgAAGCGCT
CATCAAGGCAAAAGGGGACGAAATCCGGCAGCTCAAAGCTGAAAAATCGG
AAAAGGATACAATTCTGGCTCAGGTTGCGCTCTTAAATGAGCTGAAGGCG
AAGTACAAAGAGACAACAGGCGAAGACTTtgggccgcctccatcttcgag
caagaagaagggggaagcaaAGAAAACTGATGGCGCACCTGCGTGTGGAT
TAAAAGTGGACCCTCGTAAAGCGGCCAAAGAGGCCAGGGCTGCGAAACGA
GCCGCCGGGGGTGTGGATCAGGCTacttccacgtcctcaaaTAGCGGGGG
AAACGCCTCGGATGCTGCAACCTCGAATAGTGGCTCTGCTCCATCGGTGC
CAAGCCTTGAAAGCGCAAAGTACGGGAACTTGCCTATGGTCCAGTCGCTT
GGCATGACTGACAGGGTCTGGGGCCGCATCGACGGCCTCTCGCCCTCGCG
GGCTGGGCAGCGGGTGCTTCTCCGTGGCCGGCTGCACACCTCTCGTGCCG
TAGGGAAGGGGGTCTTCCTACTACTCCGACAAGGCATCGCAACGGTGCAG
GCAGTTGTCTACCAGGGCCCGGGGGTGGACAAGGGCATGGTCAAGTTCGC
GGGGGCGGTGCCCCGGGAGTCCGTCATCGACCTGGTCGGGACCTTGACAG
AGCCTAGAGAGCCCGTGGAGAGCGCAACGGCCAGGCTGGTGGAAGTGCAG
GTCGATGAGCTGTACGTGGTCAGCGCTGCCGAGAACGTCTTGCCCTTCCA
GCTCGAAGACGCCTCCCGGCCCGAGGCGAGCGAGGACCCGGAGATGCCCT
CGGTAGGGATGGACAACAGGCTGAACTACAGGTGGATAGATACAAGGACG
GCAGCCAATCAAGCCATCTTCCGTATTCAGCACGGCGTTTCTCAGCTCTT
CCGGGAATTCCTCTCCGAGCGCGGCTTCGTGGAGATCCACACGCCCAAGC
TGCTGGGCGGTGCCTCCGAGTCAGGATCCTCGGTTTTCACGCTCACCTAC
TTCGACCAAAGTGGGTGCTTGGCGCAGTCTCCGCAGCTCTATAAGCAAAT
GGCCTGTGCGTGCGGAGGGTTCGAGAAGGTCTTCGAGGTGGGTCCAGTCT
TTAGAGCGGAGAAAAGCTTCACGCACCGGCATCTGTGCGAGTTCACGGGC
CTTGACTTGGAGATGGCCATCCACGAGCATTACTACGAAGTCCTCGAGTT
ATTCTCCGACCTCTTCATTTATATCTTTGACAACCTCGCCACTCGCTTCG
CGGCTGAGCTGCAGGCTGTCAACAAACAGCATCCCTTCGAGCCCCTTCAA
TTTTGCCGACCCTCTCTTCGGCTGTCGTTtgcggagggggtggctcTCCT
TCGAGAAGCTGGCTATGACGCCAGCGAGATGGAGGACCTggacacggaga
aggagaaggcgctgggCAGGATAGTGAAGGAGAAGTATAAGACGGACTTC
TACATGATGGACCGGTACCCGCTCTCTGTGCGGCCCTTCTACACGATGCC
GTGTCCGGACGACCCCACGCTCTCCAATTCCTTCGACATGTTCATCCGAG
GCGAGGAGATCGTGTCAGGGGCCCAACGGATCCATGACGTGGAGCTCCTG
GGAGAGCGCATCGATGCCATGGGAGTGCCTCAGGAGACGCTGCGGACATA
CATGGATGCCTTTCGACACGGGGCGCTGCcgcatgggggagggggcataG
GTCTCGAGAGGGTTGTGATGCTCTACCTGGGCCTGAAGAACATCAGGAAG
ACAAGCCTTTTCCCTCGAGATCCCAAGCGATTGGCACCCTAG back to top
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