rna6391, rna6391 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6391
Unique Name	rna6391
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3129
Alignment location	CM002468.1:410217..411640 +

Link to JBrowse

Properties


Property Name	Value
Product	cytochrome b-561 domain containing 2
Orig transcript id	gnl\|cribi\|Naga_100047g36.6092.mrna
Orig protein id	gnl\|cribi\|Naga_100047g36.6092
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:410217..411640 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100047g36	gene6175	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6391	rna6391-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24329.1	cds6376	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:410217..411640+
coding sequence from alignment at CM002468.1:410217..411640+

mRNA sequence

>rna6391 ID=rna6391|Name=rna6391|organism=Nannochloropsis gaditana|type=mRNA|length=3129bp
ACAGGAAAACAATTGACTAGAAGTGCAACGAGGCACTCAACAAATGGAAC
CGGAAGTGCTACGATATTGAAAATGTTAGGACATTCCCTATCTAGCTTGA
TATTCGCATTGAAGGCACTGGGCAGTTAGAACTGAGAGCAGCATCTACTT
CACTCTTGTTCCGAGGATTCAGTGGCCTTGGAATAGGGCCTTGGATAAGG
GGATAACCATCCACCTCAGATTCTTTTGACAGGAGTACAACAACATCTGT
CTCTGCTCACATAGAAGAGCGGCAGTCGCGTAGGAGGATATCACTTCCTA
TCCCCTCGCGAACCAGCTTCAACCTTGAAGCATGGTGAACTTCACCGCAA
AACTGCAGGACAATACACGGCAAGAATGGCTGGAGCATTACGTGGACTAC
AAAGCTCTAAAAAGGCTGCTCAAGCCGTTAAAAAAAGGTGCCCCTGCGAA
AAGGGCGAGTATGATGACGTCTTACAACGGGGATGCGTCGGATTCGGATG
AGGAGGCGACAGCGCCAGGGGACTTGGTGGGCGGGCTGAAGGATCGGCTC
CACTTGCTGTCAATGGCGGGCAAGAGTTTAGGAAAACCATCGAAAACGGG
CAGGAAAGGAGGTGCGGGTGAGAGTGCCTCTTTGCTTGCTTCCGAGGAAA
AGCAACTTCGGAGTCGATTTTACGGGGGTGGTGGAGCGGCAATAACGAAG
ATGGCCGAGGAGGGACTAGCGACGCACGCAGAGGAGGAGGAAGGGAGGGA
GAACGAAGAAGAGCACGAGCATGGTTGTCTGACTCCGGACGAAGTCGGGC
AACGCGAGGTGGACAGTCAGAGGTTTGAGGCGGTCCTGCTGACGGAGTTG
GAGAAGGTGCAGCAGTTCTACGCGGAGACGATCACGGACCTGGGGCAGCA
ACTAGGCTTTCTCAAGGCCCAGTTACGAGGAGACGGAAACAAGGGGTCGC
AGCTGGCCTTGGAGGACTTGACGTCGTGGGCTCATCCGATGAGCGAGGAG
GACAAGAGGAGGGCCAAGCACCTGGCGCCCAAGGAAAGGGAGCTGATTGA
GACCACCCTGATGCGCCTGAATCGGGAGCTCACACTGCTGGAAAATTTTT
GCATCATCAACTACACGGGGTTTATCAAAATTCTGAAGAAGCACGACAAA
TTGATGCCCTCCCGGCCACTGCGTGCCTCGGTGCTTCCCCAGCTGGAAAA
GGCGCAGTTCTTCCGACACGCGCGCCTGGAGGACATCAAGCTGGAGGTAA
CGACCATTTTTGCCGACGTCTTTTGTAACAAGGATAAGAATCAAGCGGCG
GCAATGTTGCTACCGAAGCGGTTCCGGACAAATGTGGATTTCTTCCTCCT
ACAATTAGGCTACAAGCTAGGTGTAGCCGCTACCCTCGCACTTTGGGTAG
TGTGGGACTGTGTGGTGCAAGTAGCCAAGTTCGGCAAACCCACCATCGTG
ACAAAGATGGCTTTCCCCGTCTTTCGGGCCGTCGGGGGCCTGCTCCTCTT
GCACTGGTGCTGGGGCATCATCGAGCATTTCTGCAACTACCTTCGGATCA
ATTTTGTGTACCTGCTCGACCTCTCTCCGAAGAATGTGTCTTCTCCCAGG
AAGATCTTCGACGAGGCTGTGAACGAGTCCATCGTCTACCTAACCTGCAT
GCTACTTTACTACAAGGTCCTGGTGGGGGGCTTCCCAGATTGGATCCCTG
CCGGCTTCTACCCCATTTTTCTTCTCGTGTACACACTCTACTGCCTTGTT
TTCCCGTGGAAGCAGCGGAAAGGGATATGGTGGATCGTGGGCAGGGTGGT
GGTGGCCCCCCTTGTCAGCGTGACGCTGCTGGATACCGTCGTGGCAGACG
TGCTCACTTCCTTGGTCAAGGTCCTGCTGGATCTGGCCTGGTCCGCCTTC
TACGTGATCTCGGGCGACTTTACAAGAGACATCCGAGGGGCCCCGGACGA
GGTCCCGTCTTGGGAGCTTAGCGTGCTGTACAGCAAGGTGCTGGCCCCTG
TGATAGTGATCTTGCCCTACTGGTGGCGATTCATGCAGTGCTTGCGTCGC
TTCTACGACACGGGAAACCGGTGGCCACACCTGCTAAATGCGACCAAGTA
CGCCATGGCACAGACAGTGACCCTTTTCGGCGCCTTCCACCACGTGTACT
ACCACGTGCGCGGGGGAAAGGGTGGCCGGGTGCATCCGAGTCTCACGTAC
GACGTCGTGTGGGTGATGGTGACAGTAATCTCCACCTTCTACTCCTATGT
GTGGGACGTGACCATGGACTGGGGTTTGGGTCGACCCAGCAAGGGGTTTC
TGAACGACCGGCGCATGTGCTCGAGTAACGTGCCGTACTACTCCGCCATG
GTTGCCGATTTATTCTTGCGCTTCCTGTGGGTGAACACCTTGATCCCGCC
CGGCTCGGGAGGCCTTTTTTCTCTGCCGCTTTACCTAAATGCCTTCTTGA
TGGTAATGGAAATCTTACGACGGATGTTTTGGGGCGTCTTCCGCTTAGAG
AACGAGCAGTTGCGCAACACGCAGGGATTCCGAAGAGTTGATGTCATTCC
TCTGTCCTTCTCGACGGAGAACCAGCACGAGTACAGGGACCCGAAAAACA
CCAACAACCTCAGGGTTATTTTGGAAGTGTCTTTTGTGGCAGGACTGGTC
ATATTTTTGTCCATCGGTGCGGTGGTAGTCGCTGACGGCATAGATGAAGG
GGTTTAGAGAGGGCGAAAAAGGCGGATAGAGGGAGAAGGAGTTAGTAGAC
CAGGACAGGGATCCCTTGGCCTCCATGTCTGTGTGGTCACCGCAGCACAT
CGATGTCAAAAGCTGCGAAGTAATGAGGCCAACGAAAAGACCAATTGGAG
AATTTTGGGTCGGCCAGACAGGGACCAGATCAGGAAAAGGGTCCAGGTCT
GCTAGAACAAATGAGCTTGGTATGCACCCCGTGAAGAAGATGCGTTCAGC
TACCAGACTCCAAACGCCCGGCTATTCATCGAGTGGGCACAGCTCTCAGG
AAAAAGAAGGCTGGAGCACACAGTAGCACAGACGAATGTGGCAACAGTAT
CGTGGACATCTCAAATGTGAATCTATCAAAGCCGCGCGAAAAGCCTAAGG
CAAAGAAAATCCGAAGCAGAGGGTAAGGC

protein sequence of rna6391

>rna6391-protein ID=rna6391-protein|Name=rna6391|organism=Nannochloropsis gaditana|type=polypeptide|length=174bp
MVTSWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAAL
LSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIK
FNWNSKIHKTLGKAALVASGFAISTGLFTRWGKTTFEDKNVRIGLALCII
VPQVVVALDVMARFAGHKNERKGS

mRNA from alignment at CM002468.1:410217..411640+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6391 ID=rna6391|Name=rna6391|organism=Nannochloropsis gaditana|type=mRNA|length=1424bp|location=Sequence derived from alignment at CM002468.1:410217..411640+ (Nannochloropsis gaditana)
ATGCATTATAAGCTAGGTTTAAATCAGACAAGATCAATGGTGCGTCTCCC
AGTTGCCTCCAGCCTGCTCCTGACATTCGCTGCAGGAGCCTACATTGCGT
CGGAAACCTTCAAAGCTTCAGGCGGAAAGACATTTCAAGAGTGAGTTTCT
CTAGACTTATCAGCGGTCTTGTAGAAGTTTACCTCTGGAGCGATTTGTTG
GGCAAAATGGTGCTGATTTAGAGCCGCCCTATGCCTAGTTAATTCAGCAT
AGCGTGGATAGGAACTGACATGAGCACACCCACAACAGCTTGAAATCTCT
TCCGCTGTTTGCCTACCATCCTATTTTAATGGTAACTTCCTGGCTATTCT
TCGCGCCGCTCTCTTGGAGCCTGATTCTGGCTCGGGGAACAACCATGATC
AAGGCCAAGCGCATTCTCCTTACCCAGCTTCACGCCGCTTCAATGTTCTT
AGCTGTTGTTTGCTGGATTGCAGCCTTGCTCTCTATTTTCATGCACAAGC
ACAACCTGAACAAGGAACACTTTACATCGTCGCACAGCATGGTCGGAGCC
TCAGTCTTTGTGCTAGTCTTACTCAGCTACGCGTCGGCTTTTTACAATGT
CGTCGATGTCAGGACAAAGGAGGTGAGTGTGGCAGGCTGGACAAGTGCGT
GGACATCCACGATGACATGATTTCCGCTTATATACTTGGCTTATGTTCAC
AATTTTAGATCAAGTTTAATTGGAACTCCAAGATCCATAAAACGCTCGGC
AAGGCGGCTCTGGTTGCTTCAGGTTTTGCCATATCAACGGGGCTCTTTAC
CCGCTGGGGCAAAACGACGTTTGAGGATAAGAATGTACGCATCGGTCTTG
CCTTGTGTATCATTGTGCCTCAGGTAGTGGTGGCTTTGGACGTGATGGCT
CGTTTTGCTGGACACAAAAATGAGCGAAAGGGGAGTTGAAGAGAAGAAAT
CTGGATAGGAAGAGATAGGACTTTGAATGACGCTCGTGGACGATAATGGT
CGCTGAAAGGCACAGCATATGAAACTGACAATAAGGCTGTAGCTATTATG
TGCTTTTCATACTTCCACAGCATCACATCACCGAGTTAGAAAATACTGTG
CCATGACTTTTGTAAAGTTTGAGTCGACATCCGTTATGCATACCACCTTT
CAATTTTGAGGATACACGGTACAAATGTACACGCAATCTCACTTTGGTCT
GCACAACAACCATGTTGCCTTGAAGAGTGACTGTCGCTCTCCCGAAAAAA
AGGTCTGGAAAGAGTACAGACAGGTGTGTCGTGCACAGGGGGCAGTCTGA
TTTATTTTGAGTTTTTTTCCAAGGGAAGGGTACGCGGTCCCTTGTTCGTG
GCTTACCTACAAGAATACACCGTTTCAAGTAATCTGGAGATGAGACATGC
GGTAAAGCTATACTTTCACACGTC

Coding sequence (CDS) from alignment at CM002468.1:410217..411640+

>rna6391 ID=rna6391|Name=rna6391|organism=Nannochloropsis gaditana|type=CDS|length=1050bp|location=Sequence derived from alignment at CM002468.1:410217..411640+ (Nannochloropsis gaditana)
ATGGTAACTTCCTGGCTATTCTTCGCGCCGCTCTCTTGGAGCCTGATTCT
GGCTCGGGGAACAACCATGATCAAGGCCAAGCGCATTCTCCTTACCCAGC
TTCACGCCGCTTCAATGTTCTTAGCTGTTGTTTGCTGGATTGCAGCCTTG
CTCTCTATTTTCATGCACAAGCACAACCTGAACAAGGAACACTTTACATC
GTCGCACAGCATGGTCGGAGCCTCAGTCTTTGTGCTAGTCTTACTCAGCT
ACGCGTCGGCTTTTTACAATGTCGTCGATGTCAGGACAAAGGAGATCAAG
TTTAATTGGAACTCCAAGATCCATAAAACGCTCGGCAAGGCGGCTCTGGT
TGCTTCAGGTTTTGCCATATCAACGGGGCTCTTTACCCGCTGGGGCAAAA
CGACGTTTGAGGATAAGAATGTACGCATCGGTCTTGCCTTGTGTATCATT
GTGCCTCAGGTAGTGGTGGCTTTGGACGTGATGGCTCGTTTTGCTGGACA
CAAAAATGAGCGAAAGGGGAGTTGAATGGTAACTTCCTGGCTATTCTTCG
CGCCGCTCTCTTGGAGCCTGATTCTGGCTCGGGGAACAACCATGATCAAG
GCCAAGCGCATTCTCCTTACCCAGCTTCACGCCGCTTCAATGTTCTTAGC
TGTTGTTTGCTGGATTGCAGCCTTGCTCTCTATTTTCATGCACAAGCACA
ACCTGAACAAGGAACACTTTACATCGTCGCACAGCATGGTCGGAGCCTCA
GTCTTTGTGCTAGTCTTACTCAGCTACGCGTCGGCTTTTTACAATGTCGT
CGATGTCAGGACAAAGGAGATCAAGTTTAATTGGAACTCCAAGATCCATA
AAACGCTCGGCAAGGCGGCTCTGGTTGCTTCAGGTTTTGCCATATCAACG
GGGCTCTTTACCCGCTGGGGCAAAACGACGTTTGAGGATAAGAATGTACG
CATCGGTCTTGCCTTGTGTATCATTGTGCCTCAGGTAGTGGTGGCTTTGG
ACGTGATGGCTCGTTTTGCTGGACACAAAAATGAGCGAAAGGGGAGTTGA

Synonyms

Publications