EWM24329.1, cds6376 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24329.1 vs. NCBI_GenBank
Match: gi|585105721|gb|EWM24329.1| (cytochrome b-561 domain containing 2 [Nannochloropsis gaditana]) HSP 1 Score: 352.058 bits (902), Expect = 8.389e-123 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 Query: 1 MVTSWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFTRWGKTTFEDKNVRIGLALCIIVPQVVVALDVMARFAGHKNERKGS 174 MVTSWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFTRWGKTTFEDKNVRIGLALCIIVPQVVVALDVMARFAGHKNERKGS Sbjct: 1 MVTSWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFTRWGKTTFEDKNVRIGLALCIIVPQVVVALDVMARFAGHKNERKGS 174
BLAST of EWM24329.1 vs. NCBI_GenBank
Match: gi|325188164|emb|CCA22705.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 63.5438 bits (153), Expect = 3.775e-9 Identity = 49/168 (29.17%), Postives = 79/168 (47.02%), Query Frame = 0 Query: 4 SWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFT-RWGKTTFEDKNVRIGLALCIIVPQV-VVALDVMARFAGHKN 169 S L AP++ + + + +R+ LT++H A LA C +A + I+M+K K+HFTS HS V F L LS V + +K+ W H+ G V + GL++ WG F D+N R LAL I++ + ++ ++A H+N Sbjct: 42 SQLLLAPMALFAMSEKKKSSSHMRRVRLTKIHFACQLLAFTCMLAGGIVIYMNKQMTQKQHFTSLHSWVAVLSFGLYTLSLLRGIMRTV-CAGRIVKWLWRDTYHRVGGFGGSVLGAMSAVLGLYSGMWGLNHFGDQN-RFNLALMIVLGYLFLLGRTLVADQNAHRN 207
BLAST of EWM24329.1 vs. NCBI_GenBank
Match: gi|635369709|emb|CCI42179.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 63.1586 bits (152), Expect = 5.115e-9 Identity = 46/149 (30.87%), Postives = 72/149 (48.32%), Query Frame = 0 Query: 4 SWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFTR-WGKTTFEDKNVRIGLALCIIV 151 S LF AP++ ++ R + +R+ LTQ+H A LA C + + I+ +K K+HFTSSHS V F +++ S V K IK+ W H+ +G ++ + GL + WG F +N R LAL I++ Sbjct: 41 SQLFLAPMALFVMSERKNSSNYTRRVRLTQIHLACQLLAFSCMLVGGVVIYANKSMSKKQHFTSSHSWVAVLSFGFYIVNLFSGVIRTV-CAGKRIKWLWRDTYHRIIGFSSSAFGAMTVVQGLNSGVWGLNQFGHQN-RFNLALMIVL 187
BLAST of EWM24329.1 vs. NCBI_GenBank
Match: gi|298711823|emb|CBJ32849.1| (cytochrome b-561 domain containing 2 [Ectocarpus siliculosus]) HSP 1 Score: 61.6178 bits (148), Expect = 1.663e-8 Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = 0 Query: 18 ARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFTRWG 132 A G K +R+ QLH+A LA+ + L +I+ +K + K H+TS HS G L + + A A N D+ + + F W S+ H+ GKAA A A+ GL + WG Sbjct: 55 AVGGMAPKTQRV---QLHSALSNLALASMLGGLYAIYTNKEKMGKNHWTSWHSWAGVLALALWVGNVALAGANTADLEKRRLLFLWKSRNHRWAGKAAFCAGLGAVVLGLHSGWG 166
BLAST of EWM24329.1 vs. NCBI_GenBank
Match: gi|673041263|ref|XP_008874592.1| (hypothetical protein H310_10107 [Aphanomyces invadans] >gi|574469802|gb|ETV96815.1| hypothetical protein H310_10107 [Aphanomyces invadans]) HSP 1 Score: 58.5362 bits (140), Expect = 2.379e-7 Identity = 36/109 (33.03%), Postives = 54/109 (49.54%), Query Frame = 0 Query: 26 AKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFT-RWGK 133 AKR L Q HA ++VV +I+++K N N+ HFT++HS VG + L LS+ + K + W H+ G V SG A+S GL++ WG+ Sbjct: 64 AKRTSLVQWHAFMQTVSVVLATVGFSAIYINKDNNNRPHFTTTHSWVGCAAITLYYLSFV---LGALKTFGKTWNWQWKDAAHRIFGVINFVVSGAAVSLGLYSGGWGR 169 The following BLAST results are available for this feature:
BLAST of EWM24329.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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