EWM24329.1, cds6376 (CDS) Nannochloropsis gaditana

Overview
NameEWM24329.1
Unique Namecds6376
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:410545..410838 +
Alignment locationCM002468.1:410925..411155 +

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Properties
Property NameValue
Protein idEWM24329.1
Productcytochrome b-561 domain containing 2
Orig transcript idgnl|cribi|Naga_100047g36.6092.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:410545..410838 +
CM002468.1supercontigCM002468.1:410925..411155 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR004877Cyt_b561_dom
IPR006593Cyt_b561/ferric_Rdtase_TM
Homology
BLAST of EWM24329.1 vs. NCBI_GenBank
Match: gi|585105721|gb|EWM24329.1| (cytochrome b-561 domain containing 2 [Nannochloropsis gaditana])

HSP 1 Score: 352.058 bits (902), Expect = 8.389e-123
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0
Query:    1 MVTSWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFTRWGKTTFEDKNVRIGLALCIIVPQVVVALDVMARFAGHKNERKGS 174
            MVTSWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFTRWGKTTFEDKNVRIGLALCIIVPQVVVALDVMARFAGHKNERKGS
Sbjct:    1 MVTSWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFTRWGKTTFEDKNVRIGLALCIIVPQVVVALDVMARFAGHKNERKGS 174          
BLAST of EWM24329.1 vs. NCBI_GenBank
Match: gi|325188164|emb|CCA22705.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 63.5438 bits (153), Expect = 3.775e-9
Identity = 49/168 (29.17%), Postives = 79/168 (47.02%), Query Frame = 0
Query:    4 SWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFT-RWGKTTFEDKNVRIGLALCIIVPQV-VVALDVMARFAGHKN 169
            S L  AP++   +  +  +    +R+ LT++H A   LA  C +A  + I+M+K    K+HFTS HS V    F L  LS        V    + +K+ W    H+  G    V    +   GL++  WG   F D+N R  LAL I++  + ++   ++A    H+N
Sbjct:   42 SQLLLAPMALFAMSEKKKSSSHMRRVRLTKIHFACQLLAFTCMLAGGIVIYMNKQMTQKQHFTSLHSWVAVLSFGLYTLSLLRGIMRTV-CAGRIVKWLWRDTYHRVGGFGGSVLGAMSAVLGLYSGMWGLNHFGDQN-RFNLALMIVLGYLFLLGRTLVADQNAHRN 207          
BLAST of EWM24329.1 vs. NCBI_GenBank
Match: gi|635369709|emb|CCI42179.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 63.1586 bits (152), Expect = 5.115e-9
Identity = 46/149 (30.87%), Postives = 72/149 (48.32%), Query Frame = 0
Query:    4 SWLFFAPLSWSLILARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFTR-WGKTTFEDKNVRIGLALCIIV 151
            S LF AP++  ++  R  +    +R+ LTQ+H A   LA  C +   + I+ +K    K+HFTSSHS V    F   +++  S     V    K IK+ W    H+ +G ++       +  GL +  WG   F  +N R  LAL I++
Sbjct:   41 SQLFLAPMALFVMSERKNSSNYTRRVRLTQIHLACQLLAFSCMLVGGVVIYANKSMSKKQHFTSSHSWVAVLSFGFYIVNLFSGVIRTV-CAGKRIKWLWRDTYHRIIGFSSSAFGAMTVVQGLNSGVWGLNQFGHQN-RFNLALMIVL 187          
BLAST of EWM24329.1 vs. NCBI_GenBank
Match: gi|298711823|emb|CBJ32849.1| (cytochrome b-561 domain containing 2 [Ectocarpus siliculosus])

HSP 1 Score: 61.6178 bits (148), Expect = 1.663e-8
Identity = 39/115 (33.91%), Postives = 58/115 (50.43%), Query Frame = 0
Query:   18 ARGTTMIKAKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFTRWG 132
            A G    K +R+   QLH+A   LA+   +  L +I+ +K  + K H+TS HS  G     L + + A A  N  D+  + + F W S+ H+  GKAA  A   A+  GL + WG
Sbjct:   55 AVGGMAPKTQRV---QLHSALSNLALASMLGGLYAIYTNKEKMGKNHWTSWHSWAGVLALALWVGNVALAGANTADLEKRRLLFLWKSRNHRWAGKAAFCAGLGAVVLGLHSGWG 166          
BLAST of EWM24329.1 vs. NCBI_GenBank
Match: gi|673041263|ref|XP_008874592.1| (hypothetical protein H310_10107 [Aphanomyces invadans] >gi|574469802|gb|ETV96815.1| hypothetical protein H310_10107 [Aphanomyces invadans])

HSP 1 Score: 58.5362 bits (140), Expect = 2.379e-7
Identity = 36/109 (33.03%), Postives = 54/109 (49.54%), Query Frame = 0
Query:   26 AKRILLTQLHAASMFLAVVCWIAALLSIFMHKHNLNKEHFTSSHSMVGASVFVLVLLSYASAFYNVVDVRTKEIKFNWNSKIHKTLGKAALVASGFAISTGLFT-RWGK 133
            AKR  L Q HA    ++VV       +I+++K N N+ HFT++HS VG +   L  LS+       +    K   + W    H+  G    V SG A+S GL++  WG+
Sbjct:   64 AKRTSLVQWHAFMQTVSVVLATVGFSAIYINKDNNNRPHFTTTHSWVGCAAITLYYLSFV---LGALKTFGKTWNWQWKDAAHRIFGVINFVVSGAAVSLGLYSGGWGR 169          
The following BLAST results are available for this feature:
BLAST of EWM24329.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585105721|gb|EWM24329.1|8.389e-123100.00cytochrome b-561 domain containing 2 [Nannochlorop... [more]
gi|325188164|emb|CCA22705.1|3.775e-929.17conserved hypothetical protein [Albugo laibachii N... [more]
gi|635369709|emb|CCI42179.1|5.115e-930.87unnamed protein product [Albugo candida][more]
gi|298711823|emb|CBJ32849.1|1.663e-833.91cytochrome b-561 domain containing 2 [Ectocarpus s... [more]
gi|673041263|ref|XP_008874592.1|2.379e-733.03hypothetical protein H310_10107 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6391rna6391Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications