rna6387, rna6387 (mRNA) Nannochloropsis gaditana

Overview
Namerna6387
Unique Namerna6387
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length876
Alignment locationCM002468.1:402613..403542 +

Link to JBrowse

Properties
Property NameValue
Productnad-dependent epimerase dehydratase
Orig transcript idgnl|cribi|Naga_100047g30.6086.mrna
Orig protein idgnl|cribi|Naga_100047g30.6086
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:402613..403542 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100047g30gene6171Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6387rna6387-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24323.1cds6372Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6387 ID=rna6387|Name=rna6387|organism=Nannochloropsis gaditana|type=mRNA|length=876bp
ATGCCAGACCTCCCTCCTTCCACTCACGCCTTTGCCACACCATTGTCATG
CTTTGACGATTCATTCTCTCTACACAACTTCTCGCACTACGTGATTGCAA
GGACACCTGACTCATTTTCGGGTTTTGCCCCGACAAGTGCGATGTCACCA
ACCTCCTTCTCGTCTCCCTCATCGTTGTCCTCAGCTTCCTCACTGGTGGC
CTTACCATGCACAATGTGCCTCCTCAGAGTGATCACTGCTCTTTTCATTC
TCTGTCTTCTTCCGAGCCAATGCGGTGCCTGGTCCTCTTCGTTTTTACCC
GGTGTTCGGAGCCGCACCACCTCGTGGCGAGCTTCGGACATCTCTCGCAC
ACTGTGTATGAAAATTCAATGGGACCCATACACAGGCCAATTTATCGACC
TAGGAGATGATGCGGGAGAGATCGGTGTCCCATCCCGTACCCCGTCTTCC
TCCGCATCCAGTGGCCCGGGAGAGGAGCCGAACAAAGCGACGGGCCTGAA
GGCGGAGGACCTGAAGGGAGTGGGAGGCAGTGTCGGGAAAGTTAACGCCT
ACATCGCACAGAAATTGATGGAATCCCCTATAGAGGAAAGTCCAGTAAAA
GTGGATGCCCTACTACAGGACCTAGAAGACCTAGGGTTGGCCGAGGGGGA
GGAGGCGACCTGGCCCGAGATCACTGAGAGCATGCAGTCTGTCCTCCGCA
ACGAGCAGGCAGCAGCCTTGGAGACGGTCAGGCGGAACGTGGATTTAACT
CGAGCTACGACGATTCTGATCCACTCTAAAGACAGTGGGTTGGCGCCCGT
CTTGCGGGATGCATTGAAGGCGCGGGGGGGAGCATCCAGGAGTGTGACGG
TGGGGGAGAGGGGGGGGGGGTTCTAG
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protein sequence of rna6387

>rna6387-protein ID=rna6387-protein|Name=rna6387|organism=Nannochloropsis gaditana|type=polypeptide|length=309bp
MLDATKIEQMITTAAEAGELRHVIYLSSLGSERAAFQFSLDSMSGALEKK
KAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQALSLEPGDPFSAGQTN
WPTAAQAVVQSMALPSALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEV
LRLTFRAAPVADMRMSLRAWALQFMEGERKLTTKVFAVRTPLGAKIYFLP
TMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKE
GGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVESTEKMAAQGR
SVGGGAPPA
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mRNA from alignment at CM002468.1:402613..403542+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6387 ID=rna6387|Name=rna6387|organism=Nannochloropsis gaditana|type=mRNA|length=930bp|location=Sequence derived from alignment at CM002468.1:402613..403542+ (Nannochloropsis gaditana)
ATGTTGGATGCAACCAAGATTGAGCAAATGATAACGACAGCGGCAGAAGC
GGGCGAGCTCAGACACGTCATCTACCTCTCAAGCCTGGGTTCGGAGAGAG
CAGCGTTCCAGTTCTCGCTCGACAGCATGAGCGGGGCActcgagaagaag
aaggcggtaGAGCAGAGTGTTCGCCGGCTGAGCAAGATGCTGGGGTTTAA
TTTCTCCATCATCCGCGTAGGAAGCTTGGGTCCGGGCAATGCGGGGGAGC
AGGCCCTCTCTCTCGAACCGGGAGACCCCTTCTCGGCAGGTCAGACCAAC
TGGCCGACGGCGGCCCAGGCGGTGGTACAGTCCATGGCTCTGCCCTCCGC
ATTGaacgcctctttctccgtggTCAActgcaaggggaaggaggcgcccG
TCGACGACGACTGGAGAGACAGCCTcctgaaggtggtggggccCGAGGTC
CTCCGTCTCACCTTCCGCGCCGCCCCTGTCGCGGACATGCGCATGTCCCT
GCGGGCATGGGCTCTGCAGttcatggagggagaaaggaagctgACCACCA
AAGTGTTCGCCGTCAGGACCCCTTTAGGCGCCAAGATCTACTTTCTTCCG
ACCATGCAGAACCTAGGGCCCGGcttcagggaggagaaagccatcgagaa
ggcgaggatgaagggagaggcCTCGCTGGGAGGCCAGAAACCGACGCGAC
CCATCCTGGAGGGGGGGTTGGAGGTatgcgtggaggaggttgggaaggaa
ggaggacgagaggctgggaagaaaagggtACGAGTGCGGAGGATCGCtat
ggaggaaggaacagTGGTGAAGGCGATGTCGGAGAGGGAGCTTCTCGAGA
GTctgaaggcggaggtcgaGAGTACGGAGAAGATGGCCGCGCAGGGGCGa
agcgtgggggggggggcgcctcCGGCCTAG
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Coding sequence (CDS) from alignment at CM002468.1:402613..403542+

>rna6387 ID=rna6387|Name=rna6387|organism=Nannochloropsis gaditana|type=CDS|length=930bp|location=Sequence derived from alignment at CM002468.1:402613..403542+ (Nannochloropsis gaditana)
ATGTTGGATGCAACCAAGATTGAGCAAATGATAACGACAGCGGCAGAAGC
GGGCGAGCTCAGACACGTCATCTACCTCTCAAGCCTGGGTTCGGAGAGAG
CAGCGTTCCAGTTCTCGCTCGACAGCATGAGCGGGGCActcgagaagaag
aaggcggtaGAGCAGAGTGTTCGCCGGCTGAGCAAGATGCTGGGGTTTAA
TTTCTCCATCATCCGCGTAGGAAGCTTGGGTCCGGGCAATGCGGGGGAGC
AGGCCCTCTCTCTCGAACCGGGAGACCCCTTCTCGGCAGGTCAGACCAAC
TGGCCGACGGCGGCCCAGGCGGTGGTACAGTCCATGGCTCTGCCCTCCGC
ATTGaacgcctctttctccgtggTCAActgcaaggggaaggaggcgcccG
TCGACGACGACTGGAGAGACAGCCTcctgaaggtggtggggccCGAGGTC
CTCCGTCTCACCTTCCGCGCCGCCCCTGTCGCGGACATGCGCATGTCCCT
GCGGGCATGGGCTCTGCAGttcatggagggagaaaggaagctgACCACCA
AAGTGTTCGCCGTCAGGACCCCTTTAGGCGCCAAGATCTACTTTCTTCCG
ACCATGCAGAACCTAGGGCCCGGcttcagggaggagaaagccatcgagaa
ggcgaggatgaagggagaggcCTCGCTGGGAGGCCAGAAACCGACGCGAC
CCATCCTGGAGGGGGGGTTGGAGGTatgcgtggaggaggttgggaaggaa
ggaggacgagaggctgggaagaaaagggtACGAGTGCGGAGGATCGCtat
ggaggaaggaacagTGGTGAAGGCGATGTCGGAGAGGGAGCTTCTCGAGA
GTctgaaggcggaggtcgaGAGTACGGAGAAGATGGCCGCGCAGGGGCGa
agcgtgggggggggggcgcctcCGGCCTAG
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Synonyms
Publications