EWM24323.1, cds6372 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|585105715|gb|EWM24323.1| (nad-dependent epimerase dehydratase [Nannochloropsis gaditana]) HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0 Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
Query: 1 MLDATKIEQMITTAAEAGELRHVIYLSSLGSERAAFQFSLDSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPSALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEVLRLTFRAAPVADMRMSLRAWALQFMEGERKLTTKVFAVRTPLGAKIYFLPTMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVESTEKMAAQGRSVGGGAPPA 309
MLDATKIEQMITTAAEAGELRHVIYLSSLGSERAAFQFSLDSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPSALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEVLRLTFRAAPVADMRMSLRAWALQFMEGERKLTTKVFAVRTPLGAKIYFLPTMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVESTEKMAAQGRSVGGGAPPA
Sbjct: 1 MLDATKIEQMITTAAEAGELRHVIYLSSLGSERAAFQFSLDSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPSALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEVLRLTFRAAPVADMRMSLRAWALQFMEGERKLTTKVFAVRTPLGAKIYFLPTMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVESTEKMAAQGRSVGGGAPPA 309
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|873236767|emb|CEL98445.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 104.76 bits (260), Expect = 1.614e-21 Identity = 93/301 (30.90%), Postives = 144/301 (47.84%), Query Frame = 0
Query: 2 LDATKIEQMITTAAEAGELRHVIYLSSLGSERAAFQFSLDSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQA-LSLEPGD----PFSAGQTNWPTAAQAVVQSMALPSALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEVLRLTFRAAPVADMRMSLRAWA-LQFMEGE--RKLTTKVFAVRTPLGAKIYFLPTMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVESTEK 294
+D+ +E+ + A + L HVI LS LG +R + L M L+ K+ VE+S+ + S G ++S +RVG L P AGE A + E GD P A T AAQ +V+ + A NA+ S+ + GK+ P + +W D+ +K+ GPE+ R + + PV + L+ WA L EG+ + LTT V P G ++ F P + + EE + + Q P P EGG+++ E + RVR R + VK SE ++E LK +V +K
Sbjct: 255 VDSINVEKWL---ANSPSLEHVILLSPLGIDRRD-RGGLIGMFTDLDDKRRVEESIIQQSNKRGLDYSFVRVGKLEP-LAGEMAGIRFEAGDSPSIPLDAMTTQ-EAAAQCLVRCVHQRVAYNATMSLASAPGKDFPQEWEWDDAFIKLDGPELYRESIQGMPVVHVVNFLKDWARLWLREGQYYKHLTTPVAIRSLPGGVRLQFNPRRPRVDDDYYEEPVSDSDWSR------PQPP--PNKEGGVDIVAE--------DWPYTRVRALRSCLGRDVTVKETSEAAIVEFLKKDVRKLKK 533
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|922857637|gb|KOO25859.1| (NAD-dependent epimerase dehydratase [Chrysochromulina sp. CCMP291]) HSP 1 Score: 93.9745 bits (232), Expect = 5.235e-18 Identity = 91/289 (31.49%), Postives = 141/289 (48.79%), Query Frame = 0
Query: 20 LRHVIYLSSLGSERA-AFQFSL-DSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPSALNASFSVV----NCKGKEAPVDDDWRDSLLKVVGPEVLRLTFRAAPVA----DMRMSLRAWALQFMEGERKLTTKV--FAVRTPLGAKIYFLPTMQNL-GPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAME-EGTVVKAMSERELLESLKAEVESTEK 294
LR V++LSS G ERA FSL ++ G L+K +A EQ V +K +FS++RVG L + + + GD G +A+ ++QS++ A+NASFSV + G AP + W D LK+VGPE+ R A ++R LR +AL+F++ LTT V + G + F+ N+ F + + ++ K +AS K ++ +G L + E RVRV R M+ +G V+K MSE +LE+L + + EK
Sbjct: 157 LRRVVFLSSHGVERADKLPFSLVNAWGGPLDKLRAAEQEVILRAKGRLPSFSVVRVGKLVDADGAPRRAEIASGDALQ-GDVTIGSASSVLLQSLSRQEAVNASFSVAPLARDLVGAAAPDESHWADEFLKLVGPELYRRALGGDAAAIDGDELRGWLREFALRFVQPGAGLTTPVELDDLEGGRGVILRFVQKNPNVRYANFDQRETDDEKWAKAKAS---SKQSKATPDGALYLHAE--------TEPYARVRVTRAEMDKDGIVIKPMSEATILEALDKAIATLEK 433
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|223999937|ref|XP_002289641.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974849|gb|EED93178.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 90.5077 bits (223), Expect = 1.362e-16 Identity = 92/316 (29.11%), Postives = 149/316 (47.15%), Query Frame = 0
Query: 22 HVIYLSSLGSERAA-FQFSLDSM-SGALEKKKAVEQSVRRLS------KMLGFNFSIIRVGSLG--PGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMAL-PSALNASFSVVNCKGKEAPVDDD-WRDSLLKVVGPEVLRLTF-RAAPVAD----------MRMSLRAWALQFMEGERK---LTTKVFAVRTPL------------GAKIYFLPTMQNLGPGFR---EEKAIEKARMKGEASLGGQKPTRPIL-----EGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVES 291
HV+ +S +G+ER +S+ +M G L+K + +EQ++ +S K +++I++ G + G+ GE ++++PGD G AA ++Q+MA P A N++ ++ +D + W D L + GPE+LR+ R + + + ++ WA + EG+RK LTT V T G +I F T N G ++ EEK EK R G+A T P+ EGG+E+ VE+ G RVR RR M+ TVVK MSE ++++LK V +
Sbjct: 341 HVVIVSGIGTERTNKMPYSMQNMFGGKLDKLREIEQAIVAISRSRIAGKQSPLDYTIVKYGEVASSDGDGGEN-IAIQPGDILD-GDIGVNAAANVLLQAMAYQPYARNSTMCATGRLPTDSTIDSETWNDKFLCLSGPELLRINAGRGGDIVEGQILDSKFEQLAQYIKEWASAY-EGDRKGTGLTTPVLVRNTRKAPSKFDGVVAREGVRILFQTT--NTGDRYKSATEEKMEEKERSGGDAVKKSSSAT-PVKVKGRNEGGVEILVEKTND------GDIRVRARRCNMDAKTVVKEMSEDVIVKNLKRAVNA 644
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|397574105|gb|EJK49036.1| (hypothetical protein THAOC_32126 [Thalassiosira oceanica]) HSP 1 Score: 88.5817 bits (218), Expect = 6.638e-16 Identity = 93/318 (29.25%), Postives = 149/318 (46.86%), Query Frame = 0
Query: 22 HVIYLSSLGSERA-AFQFSLDSM-SGALEKKKAVEQSVRRLSK------MLGFNFSIIRVGSLGPGNAGEQA-LSLEPGDPFSAGQTNWPTAAQAVVQSMAL-PSALNASFSVVNCKGKEAPVDDD-----WRDSLLKVVGPEVLRLTFRAAPVADMRMSL------------RAWALQFMEGERK---LTTKVFAVRTP-------------LGAKIYFLPTMQNLGPGFR---EEKAIEKARMKGEASLGGQKPTR----PILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEV 289
HV+ +SSLG+ER +S+ ++ G L+K + +E ++ +S+ +++I+++G + + +A + + PGD G+ AA ++Q+MA P A N++ C P D W D L + GPE+LR+ A D++ +L + W+ Q+ EG+RK LTT V R+ G +I F T N G ++ EEKA EK R G + PT+ P EGG+EV +E+ G RVR RR M + T+VK MSE ++++LK V
Sbjct: 331 HVVLISSLGTERTNKMPYSMQNLFGGKLDKVREIELALVSISRGRKQGTQTPLDYTIVKLGDIVNSDGDYEADVKILPGDKLD-GEIGVNAAANVLLQAMAYQPYARNSTL----CAAGSMPADSALDAAAWNDMFLCLSGPELLRI--EAGSGTDVKEALFDPKFEQLAEYVQGWSTQY-EGDRKGTGLTTPVLVRRSRKPSASEIDGVAARQGIRILFQST--NTGDRYKSASEEKADEKER-SGGGTTTRASPTKLVGKPSKEGGVEVLIEKT------TGGTIRVRARRCNMGDKTIVKEMSEEVIVKNLKRAV 631
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|551668996|ref|XP_005837257.1| (hypothetical protein GUITHDRAFT_151267 [Guillardia theta CCMP2712] >gi|428181413|gb|EKX50277.1| hypothetical protein GUITHDRAFT_151267 [Guillardia theta CCMP2712]) HSP 1 Score: 77.411 bits (189), Expect = 2.646e-13 Identity = 77/206 (37.38%), Postives = 103/206 (50.00%), Query Frame = 0
Query: 88 LEPGDPFSAGQTNWPTAAQAVVQSMAL-PSALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEVLRLTF-RAAPVADMRMSLRAWALQFMEGERKLTTKVFAVRTPLGAKIYFLPTMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPIL--EGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEV 289
L+PGD N AA+AV+QSM PSALNAS S++ K P +W D L++ GPE+ R + A M +WA ++ + LTT V V T G ++ F P N F+EEK EKAR KG+ K R + EGG+EV VE + RVR R M E TV+K SE+ +L SL+ +V
Sbjct: 2 LKPGDDL-VEDINPCVAAEAVLQSMLFQPSALNASMSIIGEKSANFPTQTEWDDEFLRLDGPELFREPLGSVSATACMDWVKTSWAPRWEKSGSGLTTPVKIVETANGVQLVFRPPKSNFV-SFKEEKEAEKAREKGDMDEKNSK-FRQVTDKEGGVEVVVE--------DKPFPRVRALRCNMGEETVIKETSEKIILSSLRKDV 196
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|397641279|gb|EJK74565.1| (hypothetical protein THAOC_03743, partial [Thalassiosira oceanica]) HSP 1 Score: 68.5514 bits (166), Expect = 6.672e-10 Identity = 76/241 (31.54%), Postives = 107/241 (44.40%), Query Frame = 0
Query: 90 PGDPFSAGQTNWPTAAQAVVQSMAL-PSALNASFSVVNCKGKEAPVDDD-----WRDSLLKVVGPEVLRLTFRAAPVADMRMSL------------RAWALQFMEGERK---LTTKVFAVRTP-------------LGAKIYFLPTMQNLGPGFR---EEKAIEKARMKGEASLGGQKPTR----PILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEV 289
PGD G+ AA ++Q+MA P A N++ C P D W D L + GPE+LR+ A D++ +L + W+ Q+ EG+RK LTT V R+ G +I F T N G ++ EEKA EK R G + PT+ P EGG+EV +E+ G RVR RR M + T+VK MSE ++++LK V
Sbjct: 2 PGDKLD-GEIGVNAAANVLLQAMAYQPYARNSTL----CAAGSMPADSALDAAAWNDMFLCLSGPELLRI--EAGSGTDVKEALFDPKFEQLAEYVQGWSTQY-EGDRKGTGLTTPVLVRRSRKPSASEIDGVAARQGIRILFQST--NTGDRYKSASEEKADEKERSGGGTTTRAS-PTKLVGKPSKEGGVEVLIEKT------TGGTIRVRARRCNMGDKTIVKEMSEEVIVKNLKRAV 225
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|551572343|ref|XP_005772018.1| (hypothetical protein EMIHUDRAFT_436097 [Emiliania huxleyi CCMP1516] >gi|485623376|gb|EOD19589.1| hypothetical protein EMIHUDRAFT_436097 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 65.855 bits (159), Expect = 2.559e-8 Identity = 82/302 (27.15%), Postives = 133/302 (44.04%), Query Frame = 0
Query: 21 RHVIYLSSLGSERA-AFQFSLDSM-SGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSL--------------GPGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPSALNASFSVVNCKGKEAP------VDDDWRDSLLKVVGPEVLRLTFRAAPVADMRMSLRAWALQFMEGERKLTTKVFAVRTPLGAKIYFLPTMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVESTEKMAAQGR 300
R ++ +S+ G +R A FS+++M G L+K++A+EQ ++ SI R G L +A ++ L PGD S G+ + AA +V+++ P ++NA+FS P ++D+W LK+VGPE+ R A + LR +A Q + + L T V P G + F+ T G G+ + E + + + GG++ R +G L + E R+RV R M GT+VK SE LL L ++ E A + R
Sbjct: 279 RRLLLVSTHGVDRTNALPFSMENMFGGKLDKQRALEQEALLAARKALPGHSIARFGKLKPSPRASSSSASASASASASSPSVELAPGDALS-GEMSTADAAAVLVEALRRPESVNATFSAAPRSSSSPPPAAAAGLNDEW----LKLVGPEIYRRPLEAVTPHEAASWLREFARQLLRPGQGLPTPVTVADLPDGVLLRFVTT----GYGYDSYEKEEARGAEDKWAEGGER-ARGNPDGALRLLAE--------SEPSARLRVARAEMAPGTLVKETSEELLLRRLAKGIDELEAAARRSR 562
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|501497451|ref|WP_012505715.1| (NAD(P)-dependent oxidoreductase [Prosthecochloris aestuarii] >gi|194311785|gb|ACF46180.1| NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271]) HSP 1 Score: 61.6178 bits (148), Expect = 1.653e-7 Identity = 40/120 (33.33%), Postives = 58/120 (48.33%), Query Frame = 0
Query: 10 MITTAAEAGE--LRHVIYLSSLGSERAAFQFSLDSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPSALNASFSVVNC 127
+I AA A E +RH + +SSL R L+ L K E VRRL M GF+++I+R G L G E L + GD G+ N A+A V+S+ P A + +F ++
Sbjct: 98 VIRLAAHAREQGVRHFVLISSLAVTRP--DHPLNKYGQVLTMKLEGENEVRRLFSMKGFSYTILRPGGLAEGEPMEHPLLFDTGDRIETGKINRSDVAEAAVESLWTPEARDLTFELIQT 215
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|873235750|emb|CEL99835.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 61.2326 bits (147), Expect = 3.667e-7 Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = 0
Query: 18 GELRHVIYLSSLGSERAA-FQFSLDSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSL--GPGN------------AGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPS--ALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEVLRLTFRAA 158
G L+ +S+G R FS+ ++ G L+ KK+ E++V SK G+++ I+R G L GP +Q + + PGD AG + A+A+VQ++ P+ ++ FS++N KG + P D DW +++ K L FRAA
Sbjct: 122 GGLKKFALPTSIGVRRPGQLPFSILNLFGVLDAKKSGEEAVMSASKECGYDYVIVRPGRLIGGPYTNPDVATLLKIEGGDKQRVEIAPGDQM-AGDCLRVSVAEAIVQALLCPALDGVSIDFSIINSKG-DPPTDADWGEAMTK------LETHFRAA 271 The following BLAST results are available for this feature:
BLAST of EWM24323.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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