EWM24323.1, cds6372 (CDS) Nannochloropsis gaditana

Overview
NameEWM24323.1
Unique Namecds6372
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:402613..403542 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24323.1
Productnad-dependent epimerase dehydratase
Orig transcript idgnl|cribi|Naga_100047g30.6086.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:402613..403542 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR016040NAD(P)-bd_dom
Homology
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|585105715|gb|EWM24323.1| (nad-dependent epimerase dehydratase [Nannochloropsis gaditana])

HSP 1 Score: 620.157 bits (1598), Expect = 0.000e+0
Identity = 309/309 (100.00%), Postives = 309/309 (100.00%), Query Frame = 0
Query:    1 MLDATKIEQMITTAAEAGELRHVIYLSSLGSERAAFQFSLDSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPSALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEVLRLTFRAAPVADMRMSLRAWALQFMEGERKLTTKVFAVRTPLGAKIYFLPTMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVESTEKMAAQGRSVGGGAPPA 309
            MLDATKIEQMITTAAEAGELRHVIYLSSLGSERAAFQFSLDSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPSALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEVLRLTFRAAPVADMRMSLRAWALQFMEGERKLTTKVFAVRTPLGAKIYFLPTMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVESTEKMAAQGRSVGGGAPPA
Sbjct:    1 MLDATKIEQMITTAAEAGELRHVIYLSSLGSERAAFQFSLDSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPSALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEVLRLTFRAAPVADMRMSLRAWALQFMEGERKLTTKVFAVRTPLGAKIYFLPTMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVESTEKMAAQGRSVGGGAPPA 309          
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|873236767|emb|CEL98445.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 104.76 bits (260), Expect = 1.614e-21
Identity = 93/301 (30.90%), Postives = 144/301 (47.84%), Query Frame = 0
Query:    2 LDATKIEQMITTAAEAGELRHVIYLSSLGSERAAFQFSLDSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQA-LSLEPGD----PFSAGQTNWPTAAQAVVQSMALPSALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEVLRLTFRAAPVADMRMSLRAWA-LQFMEGE--RKLTTKVFAVRTPLGAKIYFLPTMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVESTEK 294
            +D+  +E+ +   A +  L HVI LS LG +R   +  L  M   L+ K+ VE+S+ + S   G ++S +RVG L P  AGE A +  E GD    P  A  T    AAQ +V+ +    A NA+ S+ +  GK+ P + +W D+ +K+ GPE+ R + +  PV  +   L+ WA L   EG+  + LTT V     P G ++ F P    +   + EE   +    +       Q P  P  EGG+++  E        +    RVR  R  +     VK  SE  ++E LK +V   +K
Sbjct:  255 VDSINVEKWL---ANSPSLEHVILLSPLGIDRRD-RGGLIGMFTDLDDKRRVEESIIQQSNKRGLDYSFVRVGKLEP-LAGEMAGIRFEAGDSPSIPLDAMTTQ-EAAAQCLVRCVHQRVAYNATMSLASAPGKDFPQEWEWDDAFIKLDGPELYRESIQGMPVVHVVNFLKDWARLWLREGQYYKHLTTPVAIRSLPGGVRLQFNPRRPRVDDDYYEEPVSDSDWSR------PQPP--PNKEGGVDIVAE--------DWPYTRVRALRSCLGRDVTVKETSEAAIVEFLKKDVRKLKK 533          
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|922857637|gb|KOO25859.1| (NAD-dependent epimerase dehydratase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 93.9745 bits (232), Expect = 5.235e-18
Identity = 91/289 (31.49%), Postives = 141/289 (48.79%), Query Frame = 0
Query:   20 LRHVIYLSSLGSERA-AFQFSL-DSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPSALNASFSVV----NCKGKEAPVDDDWRDSLLKVVGPEVLRLTFRAAPVA----DMRMSLRAWALQFMEGERKLTTKV--FAVRTPLGAKIYFLPTMQNL-GPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAME-EGTVVKAMSERELLESLKAEVESTEK 294
            LR V++LSS G ERA    FSL ++  G L+K +A EQ V   +K    +FS++RVG L   +   +   +  GD    G     +A+  ++QS++   A+NASFSV     +  G  AP +  W D  LK+VGPE+ R        A    ++R  LR +AL+F++    LTT V    +    G  + F+    N+    F + +  ++   K +AS    K ++   +G L +  E             RVRV R  M+ +G V+K MSE  +LE+L   + + EK
Sbjct:  157 LRRVVFLSSHGVERADKLPFSLVNAWGGPLDKLRAAEQEVILRAKGRLPSFSVVRVGKLVDADGAPRRAEIASGDALQ-GDVTIGSASSVLLQSLSRQEAVNASFSVAPLARDLVGAAAPDESHWADEFLKLVGPELYRRALGGDAAAIDGDELRGWLREFALRFVQPGAGLTTPVELDDLEGGRGVILRFVQKNPNVRYANFDQRETDDEKWAKAKAS---SKQSKATPDGALYLHAE--------TEPYARVRVTRAEMDKDGIVIKPMSEATILEALDKAIATLEK 433          
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|223999937|ref|XP_002289641.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974849|gb|EED93178.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 90.5077 bits (223), Expect = 1.362e-16
Identity = 92/316 (29.11%), Postives = 149/316 (47.15%), Query Frame = 0
Query:   22 HVIYLSSLGSERAA-FQFSLDSM-SGALEKKKAVEQSVRRLS------KMLGFNFSIIRVGSLG--PGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMAL-PSALNASFSVVNCKGKEAPVDDD-WRDSLLKVVGPEVLRLTF-RAAPVAD----------MRMSLRAWALQFMEGERK---LTTKVFAVRTPL------------GAKIYFLPTMQNLGPGFR---EEKAIEKARMKGEASLGGQKPTRPIL-----EGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVES 291
            HV+ +S +G+ER     +S+ +M  G L+K + +EQ++  +S      K    +++I++ G +    G+ GE  ++++PGD    G      AA  ++Q+MA  P A N++         ++ +D + W D  L + GPE+LR+   R   + +          +   ++ WA  + EG+RK   LTT V    T              G +I F  T  N G  ++   EEK  EK R  G+A       T P+      EGG+E+ VE+         G  RVR RR  M+  TVVK MSE  ++++LK  V +
Sbjct:  341 HVVIVSGIGTERTNKMPYSMQNMFGGKLDKLREIEQAIVAISRSRIAGKQSPLDYTIVKYGEVASSDGDGGEN-IAIQPGDILD-GDIGVNAAANVLLQAMAYQPYARNSTMCATGRLPTDSTIDSETWNDKFLCLSGPELLRINAGRGGDIVEGQILDSKFEQLAQYIKEWASAY-EGDRKGTGLTTPVLVRNTRKAPSKFDGVVAREGVRILFQTT--NTGDRYKSATEEKMEEKERSGGDAVKKSSSAT-PVKVKGRNEGGVEILVEKTND------GDIRVRARRCNMDAKTVVKEMSEDVIVKNLKRAVNA 644          
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|397574105|gb|EJK49036.1| (hypothetical protein THAOC_32126 [Thalassiosira oceanica])

HSP 1 Score: 88.5817 bits (218), Expect = 6.638e-16
Identity = 93/318 (29.25%), Postives = 149/318 (46.86%), Query Frame = 0
Query:   22 HVIYLSSLGSERA-AFQFSLDSM-SGALEKKKAVEQSVRRLSK------MLGFNFSIIRVGSLGPGNAGEQA-LSLEPGDPFSAGQTNWPTAAQAVVQSMAL-PSALNASFSVVNCKGKEAPVDDD-----WRDSLLKVVGPEVLRLTFRAAPVADMRMSL------------RAWALQFMEGERK---LTTKVFAVRTP-------------LGAKIYFLPTMQNLGPGFR---EEKAIEKARMKGEASLGGQKPTR----PILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEV 289
            HV+ +SSLG+ER     +S+ ++  G L+K + +E ++  +S+          +++I+++G +   +   +A + + PGD    G+     AA  ++Q+MA  P A N++     C     P D       W D  L + GPE+LR+   A    D++ +L            + W+ Q+ EG+RK   LTT V   R+               G +I F  T  N G  ++   EEKA EK R  G  +     PT+    P  EGG+EV +E+         G  RVR RR  M + T+VK MSE  ++++LK  V
Sbjct:  331 HVVLISSLGTERTNKMPYSMQNLFGGKLDKVREIELALVSISRGRKQGTQTPLDYTIVKLGDIVNSDGDYEADVKILPGDKLD-GEIGVNAAANVLLQAMAYQPYARNSTL----CAAGSMPADSALDAAAWNDMFLCLSGPELLRI--EAGSGTDVKEALFDPKFEQLAEYVQGWSTQY-EGDRKGTGLTTPVLVRRSRKPSASEIDGVAARQGIRILFQST--NTGDRYKSASEEKADEKER-SGGGTTTRASPTKLVGKPSKEGGVEVLIEKT------TGGTIRVRARRCNMGDKTIVKEMSEEVIVKNLKRAV 631          
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|551668996|ref|XP_005837257.1| (hypothetical protein GUITHDRAFT_151267 [Guillardia theta CCMP2712] >gi|428181413|gb|EKX50277.1| hypothetical protein GUITHDRAFT_151267 [Guillardia theta CCMP2712])

HSP 1 Score: 77.411 bits (189), Expect = 2.646e-13
Identity = 77/206 (37.38%), Postives = 103/206 (50.00%), Query Frame = 0
Query:   88 LEPGDPFSAGQTNWPTAAQAVVQSMAL-PSALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEVLRLTF-RAAPVADMRMSLRAWALQFMEGERKLTTKVFAVRTPLGAKIYFLPTMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPIL--EGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEV 289
            L+PGD       N   AA+AV+QSM   PSALNAS S++  K    P   +W D  L++ GPE+ R      +  A M     +WA ++ +    LTT V  V T  G ++ F P   N    F+EEK  EKAR KG+      K  R +   EGG+EV VE        +    RVR  R  M E TV+K  SE+ +L SL+ +V
Sbjct:    2 LKPGDDL-VEDINPCVAAEAVLQSMLFQPSALNASMSIIGEKSANFPTQTEWDDEFLRLDGPELFREPLGSVSATACMDWVKTSWAPRWEKSGSGLTTPVKIVETANGVQLVFRPPKSNFV-SFKEEKEAEKAREKGDMDEKNSK-FRQVTDKEGGVEVVVE--------DKPFPRVRALRCNMGEETVIKETSEKIILSSLRKDV 196          
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|397641279|gb|EJK74565.1| (hypothetical protein THAOC_03743, partial [Thalassiosira oceanica])

HSP 1 Score: 68.5514 bits (166), Expect = 6.672e-10
Identity = 76/241 (31.54%), Postives = 107/241 (44.40%), Query Frame = 0
Query:   90 PGDPFSAGQTNWPTAAQAVVQSMAL-PSALNASFSVVNCKGKEAPVDDD-----WRDSLLKVVGPEVLRLTFRAAPVADMRMSL------------RAWALQFMEGERK---LTTKVFAVRTP-------------LGAKIYFLPTMQNLGPGFR---EEKAIEKARMKGEASLGGQKPTR----PILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEV 289
            PGD    G+     AA  ++Q+MA  P A N++     C     P D       W D  L + GPE+LR+   A    D++ +L            + W+ Q+ EG+RK   LTT V   R+               G +I F  T  N G  ++   EEKA EK R  G  +     PT+    P  EGG+EV +E+         G  RVR RR  M + T+VK MSE  ++++LK  V
Sbjct:    2 PGDKLD-GEIGVNAAANVLLQAMAYQPYARNSTL----CAAGSMPADSALDAAAWNDMFLCLSGPELLRI--EAGSGTDVKEALFDPKFEQLAEYVQGWSTQY-EGDRKGTGLTTPVLVRRSRKPSASEIDGVAARQGIRILFQST--NTGDRYKSASEEKADEKERSGGGTTTRAS-PTKLVGKPSKEGGVEVLIEKT------TGGTIRVRARRCNMGDKTIVKEMSEEVIVKNLKRAV 225          
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|551572343|ref|XP_005772018.1| (hypothetical protein EMIHUDRAFT_436097 [Emiliania huxleyi CCMP1516] >gi|485623376|gb|EOD19589.1| hypothetical protein EMIHUDRAFT_436097 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 65.855 bits (159), Expect = 2.559e-8
Identity = 82/302 (27.15%), Postives = 133/302 (44.04%), Query Frame = 0
Query:   21 RHVIYLSSLGSERA-AFQFSLDSM-SGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSL--------------GPGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPSALNASFSVVNCKGKEAP------VDDDWRDSLLKVVGPEVLRLTFRAAPVADMRMSLRAWALQFMEGERKLTTKVFAVRTPLGAKIYFLPTMQNLGPGFREEKAIEKARMKGEASLGGQKPTRPILEGGLEVCVEEVGKEGGREAGKKRVRVRRIAMEEGTVVKAMSERELLESLKAEVESTEKMAAQGR 300
            R ++ +S+ G +R  A  FS+++M  G L+K++A+EQ     ++      SI R G L                 +A   ++ L PGD  S G+ +   AA  +V+++  P ++NA+FS         P      ++D+W    LK+VGPE+ R    A    +    LR +A Q +   + L T V     P G  + F+ T    G G+   +  E    + + + GG++  R   +G L +  E             R+RV R  M  GT+VK  SE  LL  L   ++  E  A + R
Sbjct:  279 RRLLLVSTHGVDRTNALPFSMENMFGGKLDKQRALEQEALLAARKALPGHSIARFGKLKPSPRASSSSASASASASASSPSVELAPGDALS-GEMSTADAAAVLVEALRRPESVNATFSAAPRSSSSPPPAAAAGLNDEW----LKLVGPEIYRRPLEAVTPHEAASWLREFARQLLRPGQGLPTPVTVADLPDGVLLRFVTT----GYGYDSYEKEEARGAEDKWAEGGER-ARGNPDGALRLLAE--------SEPSARLRVARAEMAPGTLVKETSEELLLRRLAKGIDELEAAARRSR 562          
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|501497451|ref|WP_012505715.1| (NAD(P)-dependent oxidoreductase [Prosthecochloris aestuarii] >gi|194311785|gb|ACF46180.1| NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271])

HSP 1 Score: 61.6178 bits (148), Expect = 1.653e-7
Identity = 40/120 (33.33%), Postives = 58/120 (48.33%), Query Frame = 0
Query:   10 MITTAAEAGE--LRHVIYLSSLGSERAAFQFSLDSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSLGPGNAGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPSALNASFSVVNC 127
            +I  AA A E  +RH + +SSL   R      L+     L  K   E  VRRL  M GF+++I+R G L  G   E  L  + GD    G+ N    A+A V+S+  P A + +F ++  
Sbjct:   98 VIRLAAHAREQGVRHFVLISSLAVTRP--DHPLNKYGQVLTMKLEGENEVRRLFSMKGFSYTILRPGGLAEGEPMEHPLLFDTGDRIETGKINRSDVAEAAVESLWTPEARDLTFELIQT 215          
BLAST of EWM24323.1 vs. NCBI_GenBank
Match: gi|873235750|emb|CEL99835.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 61.2326 bits (147), Expect = 3.667e-7
Identity = 48/158 (30.38%), Postives = 79/158 (50.00%), Query Frame = 0
Query:   18 GELRHVIYLSSLGSERAA-FQFSLDSMSGALEKKKAVEQSVRRLSKMLGFNFSIIRVGSL--GPGN------------AGEQALSLEPGDPFSAGQTNWPTAAQAVVQSMALPS--ALNASFSVVNCKGKEAPVDDDWRDSLLKVVGPEVLRLTFRAA 158
            G L+     +S+G  R     FS+ ++ G L+ KK+ E++V   SK  G+++ I+R G L  GP                +Q + + PGD   AG     + A+A+VQ++  P+   ++  FS++N KG + P D DW +++ K      L   FRAA
Sbjct:  122 GGLKKFALPTSIGVRRPGQLPFSILNLFGVLDAKKSGEEAVMSASKECGYDYVIVRPGRLIGGPYTNPDVATLLKIEGGDKQRVEIAPGDQM-AGDCLRVSVAEAIVQALLCPALDGVSIDFSIINSKG-DPPTDADWGEAMTK------LETHFRAA 271          
The following BLAST results are available for this feature:
BLAST of EWM24323.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105715|gb|EWM24323.1|0.000e+0100.00nad-dependent epimerase dehydratase [Nannochlorops... [more]
gi|873236767|emb|CEL98445.1|1.614e-2130.90unnamed protein product [Vitrella brassicaformis C... [more]
gi|922857637|gb|KOO25859.1|5.235e-1831.49NAD-dependent epimerase dehydratase [Chrysochromul... [more]
gi|223999937|ref|XP_002289641.1|1.362e-1629.11predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397574105|gb|EJK49036.1|6.638e-1629.25hypothetical protein THAOC_32126 [Thalassiosira oc... [more]
gi|551668996|ref|XP_005837257.1|2.646e-1337.38hypothetical protein GUITHDRAFT_151267 [Guillardia... [more]
gi|397641279|gb|EJK74565.1|6.672e-1031.54hypothetical protein THAOC_03743, partial [Thalass... [more]
gi|551572343|ref|XP_005772018.1|2.559e-827.15hypothetical protein EMIHUDRAFT_436097 [Emiliania ... [more]
gi|501497451|ref|WP_012505715.1|1.653e-733.33NAD(P)-dependent oxidoreductase [Prosthecochloris ... [more]
gi|873235750|emb|CEL99835.1|3.667e-730.38unnamed protein product [Vitrella brassicaformis C... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6387rna6387Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications