rna6385, rna6385 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6385
Unique Name	rna6385
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1822
Alignment location	CM002468.1:398256..400711 -

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Properties


Property Name	Value
Product	ubiquitin specific peptidase 15
Orig transcript id	gnl\|cribi\|Naga_100047g28.6088.mrna
Orig protein id	gnl\|cribi\|Naga_100047g28.6088
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:398256..400711 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100047g28	gene6169	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24325.1	cds6370	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6385	rna6385-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:398256..400711-
coding sequence from alignment at CM002468.1:398256..400711-

mRNA sequence

>rna6385 ID=rna6385|Name=rna6385|organism=Nannochloropsis gaditana|type=mRNA|length=1822bp
CCCCCAAGGCAACGAGCGGGACTAAAAACCATGTTGTCTGTTGTTTGAAA
GCGGCCGTGAAGATACTGCCATTGATACCGTGAATAAATATTCTTTACTG
GGCGTGTGGTGTGCTTATCATGATAGCTTGTGATTGTTGCTTATACGCGT
CTGATTTTTAATCTCTGTCCTTCGATTACGTGCGCTCCTCTTCGTCACAG
CAAGGTCTTCGTGTTCTCATCTTCCGTGAGGCCGCAAGCAGCGTTTAATT
CATTATCCACTTTACATATGACTTCCGATTACACATGGTGAAGATCATAA
GCTGGAATGTCGCCTCACTACCTGCTTTGCAGGGGTTTATCGAGCATGAG
AAGGGTAGTATGAATCGCTTCTTAGAAGACCTGTGTGTGGACATCATGTG
CTTCCAAGAAACAAAGCTATCTGTGGCACAAATTACCAAGAAACAAGCCT
CCTTTCTCGTACCTGATGGCAAGTGGTGGACTTATTGGGCGGTGGGACAG
ACCCCCGGATACTGCGGTGTCGCTACTTTTTGCAAGGCGGAGCAGCCCCT
CTCCGTCTACACGGATGCGGATCTTTTTGCGGAAGAGGATGAGGCGCAAC
ACTGCATCTCCAAAGAAGGGCGTTTGGTAGTGACGGACCATGGTGACTTT
GTGCTATTCAATGTCTACTGCCCCAATGCCGGGGGCAAAGGTCGGCCCCG
GATCGAATTTAAGGCGCGGTTTCTAGAAGCACTCTGGAGGAAGATGGAAG
AGTTTCGTGTCTCGAGAGGAAGACGAGTGATTCTCGCGGGGGACTTAAAT
TTGGTGGCAGACATGAAGGCAGACATGCACGAAGAATTTTGGAGCGCGGA
TGGTGTGGATGAACGGACGCGGCATTGGTTGCCCCGCCTCTTGTGTGAAG
GGACCTACGTTGACTCGTTCAGGAGCCTTCACCCTGACCGGAAAGACGCC
TACACTTTCTTCGACAACTACGTGACCACGCGACGGGGTCTCAATCAAGG
TTATCGGATCGACTACATCCTTGTCTCCTCTGCTCCATCGACGGGTCCAA
GGCTCCTCGCCGCCGAGATCCTGACAAACGTTTTGCGAACTAGCAAGGCC
TCAGACCACGTGCCTGTGATGGTGGAACTGGAGCTAGAACATGAAAAACT
GGGTAAAGAGGGGAGCAGAAATAAAGTGAATAATGCATCTGATCGGAAGG
AAGGAGCTGGACAACGTGTTGAGCCACTTCCAGAGCAAAAAGCCGTCCTT
GCCGCTTTCTCACCCTTGCCACCTTCCGTGAAAGATGCCATTGAAGGACG
GACAATTTTTCGAAAAATCCTTCCAGACCCGAAGCAACCCAGTATCAAAG
GATTTTTTGCGTCGACAAGGACACCGTCTGTGGTTTCGAACACGAAGGGG
CAATCCGCAGGATCTGTTGAAAGTTCATCTGGCCCCGAAGGCGCTGCGAG
CAAGGCCTCTTTATTCCCAGCCGCAACTGTGACAGAGAAACTTTGTACGT
GTGAAGCAGAATGCGACTCCAAGCGATTGGCCAAAAATGAGAATGTGAAA
GAGGCTATGTCGATAGCAAGCAACAAAAAGAGACAACCGCTCAAGTCGGA
CAAGGGCCAGCTAAGCAAATACTTGAAATTTTCTCCCGATTTGTAAGTGT
TGCAATGAGACGGGGTCTCACGTCTCAATAACAAGTGTTCACATGCAATG
GATTTGAAAAAAATATAATTTTTGTCACTCAAACATGGTTAAGAGGTAGT
CATAACTTACAATATCATCATAGCTATTGTTTTATCTTTGGATCCCTTTC
ATATTGCTTGTCTCTCCAAAAC

protein sequence of rna6385

>rna6385-protein ID=rna6385-protein|Name=rna6385|organism=Nannochloropsis gaditana|type=polypeptide|length=614bp
MRAVSLEGVSKRKRSVTSFSQPCPPKLRRSRRGRHDNGPSACETPNAVSE
TGFQGNKTRASIKDSAARPAGCRAPQVDTTSPRPLTPTALLTSMERRSIG
ISGLLRASFSGNAAEFEAEAHRLCALIPAKLLSSFTSLSSAAAFSSEWTR
ADARGRSILHGAASSGHPTILQHVLDAKVFDIDQPAEGGLTALCYALDRR
DFVGATTLLAAGANADKVESLYGFWDAAWATERMGMFGTPRADALDILRT
ALSQALVQNDDRCRPWLDLTTQHGLFEEWKASLKVGSRVDARDCDYRWYE
AEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRETLSVG
SHVEILATAAGPMAAGSTSAAATLPSPEDPQERKWWDATAVDIQRSRRRI
LLSVDGRPSVTRWVDMDGREIADIGTHVKPAPPPLLPPQTLAGSLLEVQD
DATGDVGASSAASISHSRGGKEPVAASPRQEEASKAANDGDLARLLALIN
VQDPVALRFIYFRRKLQLGMISRLNPPALGPGSLLHNGRRRRGKLGLIFH
QQVEKHHDKRPKKRHVETASLEFPSCKKRRTSKLLYAELRKNVLRYVVTD
LKEDLFKEFLQEYL

mRNA from alignment at CM002468.1:398256..400711-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6385 ID=rna6385|Name=rna6385|organism=Nannochloropsis gaditana|type=mRNA|length=2456bp|location=Sequence derived from alignment at CM002468.1:398256..400711- (Nannochloropsis gaditana)
CGAAGCATTTTCATCACTTTCTTTCAACGCCCGTTGCGGGTCGAATAAGC
GTCGTCTCACCTGCTGGGAGCACAAGAAAGACGCCACCTAGATCCACTAT
TTGTGGCGATTATCATTTAATTTCCATCACTACCGTTCTCTACCTATTAA
ACCAGGCACAATACCTGACGATATCGATGAGGGCTGTGTCCCTTGAAGGT
GTATCGAAGCGGAAGCGCTCGGTGACATCTTTCTCTCAACCTTGCCCCCC
CAAACTTCGACGCAGTCGACGGGGCAGACACGACAACGGCCCGTCTGCGT
GTGAGACACCCAATGCTGTTTCAGAAACAGGTTTTCAGGGCAACAAAACG
CGGGCTAGCATTAAGGACTCAGCGGCCCGTCCAGCAGGTTGTCGTGCTCC
TCAGGTCGATACAACTTCACCCAGACCTCTGACGCCCACAGCCCTTCTCA
CGTCAATGGAGCGCAGAAGCATTGGGATATCAGGCTTGCTCCGTGCTTCC
TTCTCCGGAAACGCAGCTGAGTTTGAAGCGGAAGCTCATCGACTGTGTGC
CCTCATCCCAGCAAAACTATTGTCGTCCTTTACATCCCTGTCTTCTGCTG
CTGCCTTCTCCTCGGAATGGACCCGCGCTGATGCTAGAGGGCGCTCCATC
CTGCACGGTGCTGCTTCCTCGGGCCATCCCACCATTTTACAACACGTGTT
AGACGCTAAAGTGTTTGACATTGATCAGCCAGCCGAGGGCGGCCTGACTG
CATTGTGCTATGCTTTAGATCGCCGAGACTTCGTGGGCGCCACTACCCTG
CTGGCCGCGGGGGCGAATGCGGACAAGGTGGAGTCACTGTATGGCTTTTG
GGATGCTGCATGGGCTACGGAAAGGATGGGCATGTTTGGTACACCTCGGG
CTGATGCGTTGGATATCTTGAGGACCGCTCTGTCTCAAGCACTGGTGCAG
AACGATGACAGGTGCCGGCCATGGCTGGACTTGACCACACAACACGGGCT
CTTCGAAGAGTGGAAGGCATCGCTAAAGGTCGGGAGCAGGGTGGACGCCC
GTGACTGCGACTATCGATGGTATGAAGCCGAGGTGGTCGGGACGTTCGAG
AGGGGGGTACGGGTTAGCTATTTGAGCTGGGGCCGCCGCTTTGACGAGGA
CCTGTCCTTAGACTCATTGCGCGTGCTGCCCGCCTACTCAGTAGTGCCCG
CATGGCGCGAGACGTTGTCAGTGGGCAGTCATGTGGAGATCCTGGCCACG
GCGGCCGGGCCCATGGCGGCAGGCTCGACGAGCGCGGCTGCAACGCTGCC
GTCTCCAGAAGACCCGCAGGAGCGGAAGTGGTGGGATGCAACGGCCGTCG
ACATTCAAAGGAGCCGACGGCGCATATTGCTGAGTGTGGATGGAAGACCG
AGCGTTACCCGCTGGGTTGACATGGATGGCCGTGAGATTGCCGACATTGG
CACGCACGTGAAGCCTGCCCCTCCGCCCCTGCTGCCTCCACAGACCCTGG
CCGGATCCCTCCTCGAGGTCCAGGATGACGCGACTGGCGATGTTGGGGCT
AGCAGCGCTGCGAGTATTTCTCACAGTCGAGGTGGCAAGGAGCCTGTCGC
CGCGAGCCCTCGACAGGAAGAGGCATCCAAGGCTGCCAACGACGGGGACT
TGGCGAGGCTCCTGGCTCTCATCAATGTGCAAGACCCGGTGGCCCTGCGT
TTTATCTACTTCAGGCGCAAGCTTCAACTCGGCATGATATCCCGTCTCAA
TCCCCCCGCCCTTGGACCAGGCTCTCTTCTGCACAACGGTCGGCGGCGGA
GGGGTAAATTAGGGCTCATTTTTCACCAACAGGTAGAGAAGCATCACGAT
AAACGCCCTAAGAAGCGGCACGTCGAGACAGCAAGTTTGGAATTTCCTAG
CTGCAAGAAGAGGAGGACGAGCAAATTGCTGTATGCCGAATTACGCAAGA
ACGTCTTGCGGTATGTGGTGACGGATTTGAAGGAAGATCTCTTCAAAGAA
TTCCTACAGGAGTATTTGTGACACAGGTGACAGGGATGAACAGCGAAAGC
TTAGCAAAGATTGAAGAGAAAACCCTGGGACATAGTTGGTCAAGTAAATC
CATAGTGTTGAAATGCAATGTAAAGCATGGAAGGATTGTAAGTATTCCTG
ACTTCTTTTTCCTCTTCAATGTATGGAAACATACTGCTGGTTGAAAATGC
AGTCATGAAAAGTGTCAAAAGCAATCGTCAGGCATTGACTCGGCCATACC
AGTACGAAAGTCGTTGAGTAAGATCGATCCCAAAAGGCGTGTCGCCTTTT
GCCGGAATGACCGATTCCAGCATTCTGACCTTTGTAGACTCATGAAACAC
TTTGTTTTGGAGAGACAAGCAATATGAAAGGGATCCAAAGATAAAACAAT
AGCTATGATGATATTGTAAGTTATGACTACCTCTTAACCATGTTTGAGTG
ACAAAA

Coding sequence (CDS) from alignment at CM002468.1:398256..400711-

>rna6385 ID=rna6385|Name=rna6385|organism=Nannochloropsis gaditana|type=CDS|length=1845bp|location=Sequence derived from alignment at CM002468.1:398256..400711- (Nannochloropsis gaditana)
ATGAGGGCTGTGTCCCTTGAAGGTGTATCGAAGCGGAAGCGCTCGGTGAC
ATCTTTCTCTCAACCTTGCCCCCCCAAACTTCGACGCAGTCGACGGGGCA
GACACGACAACGGCCCGTCTGCGTGTGAGACACCCAATGCTGTTTCAGAA
ACAGGTTTTCAGGGCAACAAAACGCGGGCTAGCATTAAGGACTCAGCGGC
CCGTCCAGCAGGTTGTCGTGCTCCTCAGGTCGATACAACTTCACCCAGAC
CTCTGACGCCCACAGCCCTTCTCACGTCAATGGAGCGCAGAAGCATTGGG
ATATCAGGCTTGCTCCGTGCTTCCTTCTCCGGAAACGCAGCTGAGTTTGA
AGCGGAAGCTCATCGACTGTGTGCCCTCATCCCAGCAAAACTATTGTCGT
CCTTTACATCCCTGTCTTCTGCTGCTGCCTTCTCCTCGGAATGGACCCGC
GCTGATGCTAGAGGGCGCTCCATCCTGCACGGTGCTGCTTCCTCGGGCCA
TCCCACCATTTTACAACACGTGTTAGACGCTAAAGTGTTTGACATTGATC
AGCCAGCCGAGGGCGGCCTGACTGCATTGTGCTATGCTTTAGATCGCCGA
GACTTCGTGGGCGCCACTACCCTGCTGGCCGCGGGGGCGAATGCGGACAA
GGTGGAGTCACTGTATGGCTTTTGGGATGCTGCATGGGCTACGGAAAGGA
TGGGCATGTTTGGTACACCTCGGGCTGATGCGTTGGATATCTTGAGGACC
GCTCTGTCTCAAGCACTGGTGCAGAACGATGACAGGTGCCGGCCATGGCT
GGACTTGACCACACAACACGGGCTCTTCGAAGAGTGGAAGGCATCGCTAA
AGGTCGGGAGCAGGGTGGACGCCCGTGACTGCGACTATCGATGGTATGAA
GCCGAGGTGGTCGGGACGTTCGAGAGGGGGGTACGGGTTAGCTATTTGAG
CTGGGGCCGCCGCTTTGACGAGGACCTGTCCTTAGACTCATTGCGCGTGC
TGCCCGCCTACTCAGTAGTGCCCGCATGGCGCGAGACGTTGTCAGTGGGC
AGTCATGTGGAGATCCTGGCCACGGCGGCCGGGCCCATGGCGGCAGGCTC
GACGAGCGCGGCTGCAACGCTGCCGTCTCCAGAAGACCCGCAGGAGCGGA
AGTGGTGGGATGCAACGGCCGTCGACATTCAAAGGAGCCGACGGCGCATA
TTGCTGAGTGTGGATGGAAGACCGAGCGTTACCCGCTGGGTTGACATGGA
TGGCCGTGAGATTGCCGACATTGGCACGCACGTGAAGCCTGCCCCTCCGC
CCCTGCTGCCTCCACAGACCCTGGCCGGATCCCTCCTCGAGGTCCAGGAT
GACGCGACTGGCGATGTTGGGGCTAGCAGCGCTGCGAGTATTTCTCACAG
TCGAGGTGGCAAGGAGCCTGTCGCCGCGAGCCCTCGACAGGAAGAGGCAT
CCAAGGCTGCCAACGACGGGGACTTGGCGAGGCTCCTGGCTCTCATCAAT
GTGCAAGACCCGGTGGCCCTGCGTTTTATCTACTTCAGGCGCAAGCTTCA
ACTCGGCATGATATCCCGTCTCAATCCCCCCGCCCTTGGACCAGGCTCTC
TTCTGCACAACGGTCGGCGGCGGAGGGGTAAATTAGGGCTCATTTTTCAC
CAACAGGTAGAGAAGCATCACGATAAACGCCCTAAGAAGCGGCACGTCGA
GACAGCAAGTTTGGAATTTCCTAGCTGCAAGAAGAGGAGGACGAGCAAAT
TGCTGTATGCCGAATTACGCAAGAACGTCTTGCGGTATGTGGTGACGGAT
TTGAAGGAAGATCTCTTCAAAGAATTCCTACAGGAGTATTTGTGA

Synonyms

Publications