EWM24325.1, cds6370 (CDS) Nannochloropsis gaditana

Overview
NameEWM24325.1
Unique Namecds6370
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:398691..400535 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24325.1
Productubiquitin specific peptidase 15
Orig transcript idgnl|cribi|Naga_100047g28.6088.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:398691..400535 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
BLAST of EWM24325.1 vs. NCBI_GenBank
Match: gi|585105717|gb|EWM24325.1| (ubiquitin specific peptidase 15 [Nannochloropsis gaditana])

HSP 1 Score: 1246.88 bits (3225), Expect = 0.000e+0
Identity = 614/614 (100.00%), Postives = 614/614 (100.00%), Query Frame = 0
Query:    1 MRAVSLEGVSKRKRSVTSFSQPCPPKLRRSRRGRHDNGPSACETPNAVSETGFQGNKTRASIKDSAARPAGCRAPQVDTTSPRPLTPTALLTSMERRSIGISGLLRASFSGNAAEFEAEAHRLCALIPAKLLSSFTSLSSAAAFSSEWTRADARGRSILHGAASSGHPTILQHVLDAKVFDIDQPAEGGLTALCYALDRRDFVGATTLLAAGANADKVESLYGFWDAAWATERMGMFGTPRADALDILRTALSQALVQNDDRCRPWLDLTTQHGLFEEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRETLSVGSHVEILATAAGPMAAGSTSAAATLPSPEDPQERKWWDATAVDIQRSRRRILLSVDGRPSVTRWVDMDGREIADIGTHVKPAPPPLLPPQTLAGSLLEVQDDATGDVGASSAASISHSRGGKEPVAASPRQEEASKAANDGDLARLLALINVQDPVALRFIYFRRKLQLGMISRLNPPALGPGSLLHNGRRRRGKLGLIFHQQVEKHHDKRPKKRHVETASLEFPSCKKRRTSKLLYAELRKNVLRYVVTDLKEDLFKEFLQEYL 614
            MRAVSLEGVSKRKRSVTSFSQPCPPKLRRSRRGRHDNGPSACETPNAVSETGFQGNKTRASIKDSAARPAGCRAPQVDTTSPRPLTPTALLTSMERRSIGISGLLRASFSGNAAEFEAEAHRLCALIPAKLLSSFTSLSSAAAFSSEWTRADARGRSILHGAASSGHPTILQHVLDAKVFDIDQPAEGGLTALCYALDRRDFVGATTLLAAGANADKVESLYGFWDAAWATERMGMFGTPRADALDILRTALSQALVQNDDRCRPWLDLTTQHGLFEEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRETLSVGSHVEILATAAGPMAAGSTSAAATLPSPEDPQERKWWDATAVDIQRSRRRILLSVDGRPSVTRWVDMDGREIADIGTHVKPAPPPLLPPQTLAGSLLEVQDDATGDVGASSAASISHSRGGKEPVAASPRQEEASKAANDGDLARLLALINVQDPVALRFIYFRRKLQLGMISRLNPPALGPGSLLHNGRRRRGKLGLIFHQQVEKHHDKRPKKRHVETASLEFPSCKKRRTSKLLYAELRKNVLRYVVTDLKEDLFKEFLQEYL
Sbjct:    1 MRAVSLEGVSKRKRSVTSFSQPCPPKLRRSRRGRHDNGPSACETPNAVSETGFQGNKTRASIKDSAARPAGCRAPQVDTTSPRPLTPTALLTSMERRSIGISGLLRASFSGNAAEFEAEAHRLCALIPAKLLSSFTSLSSAAAFSSEWTRADARGRSILHGAASSGHPTILQHVLDAKVFDIDQPAEGGLTALCYALDRRDFVGATTLLAAGANADKVESLYGFWDAAWATERMGMFGTPRADALDILRTALSQALVQNDDRCRPWLDLTTQHGLFEEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRETLSVGSHVEILATAAGPMAAGSTSAAATLPSPEDPQERKWWDATAVDIQRSRRRILLSVDGRPSVTRWVDMDGREIADIGTHVKPAPPPLLPPQTLAGSLLEVQDDATGDVGASSAASISHSRGGKEPVAASPRQEEASKAANDGDLARLLALINVQDPVALRFIYFRRKLQLGMISRLNPPALGPGSLLHNGRRRRGKLGLIFHQQVEKHHDKRPKKRHVETASLEFPSCKKRRTSKLLYAELRKNVLRYVVTDLKEDLFKEFLQEYL 614          
BLAST of EWM24325.1 vs. NCBI_GenBank
Match: gi|695419716|ref|XP_009527736.1| (hypothetical protein PHYSODRAFT_346365 [Phytophthora sojae] >gi|348678861|gb|EGZ18678.1| hypothetical protein PHYSODRAFT_346365 [Phytophthora sojae])

HSP 1 Score: 69.3218 bits (168), Expect = 1.432e-8
Identity = 51/169 (30.18%), Postives = 73/169 (43.20%), Query Frame = 0
Query:  269 LTTQHGLF------EEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRETLSVGSHVEILATAAGPMAAGSTSAAATLPSPEDPQERKWWDATAVDIQRSRR----RILLSVDGRPSVTRWVDMDGREIADIGTH 427
            L  +HG F      E W+ +L+    +DA D D +WYEA V+   +  V+V Y  W  ++DE L+  S R+ P ++ VP WR    VG  V +          G        P        +W      D+++S      RI L VDG     RWVD     +  +GTH
Sbjct:  342 LDWRHGKFYSEVQAEAWRFTLEKNQLIDALDTDKKWYEARVIDLSDTQVKVHYRGWTAKWDEWLTRTSARIAPLHTKVPNWR-AFKVGDEVLV----------GKEVDRKNYP--------EWRIGRVTDLKKSEMHDSLRIELDVDGS---KRWVDAQNELLCPVGTH 488          
BLAST of EWM24325.1 vs. NCBI_GenBank
Match: gi|695419769|ref|XP_009527751.1| (hypothetical protein PHYSODRAFT_503684 [Phytophthora sojae] >gi|348678876|gb|EGZ18693.1| hypothetical protein PHYSODRAFT_503684 [Phytophthora sojae])

HSP 1 Score: 68.9366 bits (167), Expect = 1.961e-8
Identity = 51/169 (30.18%), Postives = 73/169 (43.20%), Query Frame = 0
Query:  269 LTTQHGLF------EEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRETLSVGSHVEILATAAGPMAAGSTSAAATLPSPEDPQERKWWDATAVDIQRSRR----RILLSVDGRPSVTRWVDMDGREIADIGTH 427
            L  +HG F      E W+ +L+    +DA D D +WYEA V+   +  V+V Y  W  ++DE L+  S R+ P ++ VP WR    VG  V +          G        P        +W      D+++S      RI L VDG     RWVD     +  +GTH
Sbjct:  298 LDWRHGKFYSEVQAEAWRFTLEKNQLIDALDTDKKWYEARVIDLSDTQVKVHYRGWTAKWDEWLTRTSARIAPLHTKVPNWR-AFKVGDEVLV----------GKEVDRKNYP--------EWRIGRVTDLKKSEMHDSLRIELDVDGS---KRWVDAQNELLCPVGTH 444          
BLAST of EWM24325.1 vs. NCBI_GenBank
Match: gi|675213621|ref|XP_008915695.1| (hypothetical protein PPTG_19039 [Phytophthora parasitica INRA-310] >gi|568084081|gb|ETM99025.1| hypothetical protein PPTG_19039 [Phytophthora parasitica INRA-310] >gi|570941910|gb|ETP07167.1| hypothetical protein F441_16520 [Phytophthora parasitica CJ01A1] >gi|970664958|gb|KUG01740.1| hypothetical protein AM587_10011869 [Phytophthora nicotianae])

HSP 1 Score: 65.855 bits (159), Expect = 5.170e-8
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0
Query:  276 FEEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRE 345
             E+W++ LK+   VDA D D RWYEA++V   +  V+V Y  W  ++DE L+  S R++P +S VP WR+
Sbjct:  139 LEQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 208          
BLAST of EWM24325.1 vs. NCBI_GenBank
Match: gi|570318113|gb|ETO66061.1| (hypothetical protein F444_16689 [Phytophthora parasitica P1976])

HSP 1 Score: 65.855 bits (159), Expect = 5.217e-8
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0
Query:  276 FEEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRE 345
             E+W++ LK+   VDA D D RWYEA++V   +  V+V Y  W  ++DE L+  S R++P +S VP WR+
Sbjct:  139 LEQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 208          
BLAST of EWM24325.1 vs. NCBI_GenBank
Match: gi|568039950|gb|ETM37424.1| (hypothetical protein L914_16029 [Phytophthora parasitica])

HSP 1 Score: 65.855 bits (159), Expect = 5.362e-8
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0
Query:  276 FEEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRE 345
             E+W++ LK+   VDA D D RWYEA++V   +  V+V Y  W  ++DE L+  S R++P +S VP WR+
Sbjct:  139 LEQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 208          
BLAST of EWM24325.1 vs. NCBI_GenBank
Match: gi|567951836|gb|ETK77527.1| (hypothetical protein L915_16216 [Phytophthora parasitica] >gi|567980523|gb|ETL30983.1| hypothetical protein L916_16109 [Phytophthora parasitica])

HSP 1 Score: 65.855 bits (159), Expect = 5.362e-8
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0
Query:  276 FEEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRE 345
             E+W++ LK+   VDA D D RWYEA++V   +  V+V Y  W  ++DE L+  S R++P +S VP WR+
Sbjct:  139 LEQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 208          
BLAST of EWM24325.1 vs. NCBI_GenBank
Match: gi|570996497|gb|ETP53088.1| (hypothetical protein F442_01991 [Phytophthora parasitica P10297])

HSP 1 Score: 65.4698 bits (158), Expect = 5.767e-8
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0
Query:  276 FEEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRE 345
             E+W++ LK+   VDA D D RWYEA++V   +  V+V Y  W  ++DE L+  S R++P +S VP WR+
Sbjct:  139 LEQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 208          
BLAST of EWM24325.1 vs. NCBI_GenBank
Match: gi|568010049|gb|ETL84242.1| (hypothetical protein L917_15908 [Phytophthora parasitica])

HSP 1 Score: 65.4698 bits (158), Expect = 5.820e-8
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0
Query:  276 FEEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRE 345
             E+W++ LK+   VDA D D RWYEA++V   +  V+V Y  W  ++DE L+  S R++P +S VP WR+
Sbjct:  139 LEQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 208          
BLAST of EWM24325.1 vs. NCBI_GenBank
Match: gi|568039937|gb|ETM37411.1| (hypothetical protein L914_16030, partial [Phytophthora parasitica])

HSP 1 Score: 65.855 bits (159), Expect = 6.288e-8
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 0
Query:  276 FEEWKASLKVGSRVDARDCDYRWYEAEVVGTFERGVRVSYLSWGRRFDEDLSLDSLRVLPAYSVVPAWRE 345
             E+W++ LK+   VDA D D RWYEA++V   +  V+V Y  W  ++DE L+  S R++P +S VP WR+
Sbjct:  155 LEQWRSELKLDQSVDALDTDSRWYEAKIVDITDSRVKVHYRGWSVKWDEWLAKTSPRLMPTHSRVPNWRK 224          
The following BLAST results are available for this feature:
BLAST of EWM24325.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105717|gb|EWM24325.1|0.000e+0100.00ubiquitin specific peptidase 15 [Nannochloropsis g... [more]
gi|695419716|ref|XP_009527736.1|1.432e-830.18hypothetical protein PHYSODRAFT_346365 [Phytophtho... [more]
gi|695419769|ref|XP_009527751.1|1.961e-830.18hypothetical protein PHYSODRAFT_503684 [Phytophtho... [more]
gi|675213621|ref|XP_008915695.1|5.170e-842.86hypothetical protein PPTG_19039 [Phytophthora para... [more]
gi|570318113|gb|ETO66061.1|5.217e-842.86hypothetical protein F444_16689 [Phytophthora para... [more]
gi|568039950|gb|ETM37424.1|5.362e-842.86hypothetical protein L914_16029 [Phytophthora para... [more]
gi|567951836|gb|ETK77527.1|5.362e-842.86hypothetical protein L915_16216 [Phytophthora para... [more]
gi|570996497|gb|ETP53088.1|5.767e-842.86hypothetical protein F442_01991 [Phytophthora para... [more]
gi|568010049|gb|ETL84242.1|5.820e-842.86hypothetical protein L917_15908 [Phytophthora para... [more]
gi|568039937|gb|ETM37411.1|6.288e-842.86hypothetical protein L914_16030, partial [Phytopht... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6385rna6385Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications