rna6380, rna6380 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6380
Unique Name	rna6380
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2465
Alignment location	CM002468.1:386140..387890 -

Link to JBrowse

Properties


Property Name	Value
Product	ubiquitin-conjugating enzyme
Orig transcript id	gnl\|cribi\|Naga_100047g22.6076.mrna
Orig protein id	gnl\|cribi\|Naga_100047g22.6076
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:386140..387890 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100047g22	gene6164	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6380	rna6380-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24313.1	cds6365	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:386140..387890-
coding sequence from alignment at CM002468.1:386140..387890-

mRNA sequence

>rna6380 ID=rna6380|Name=rna6380|organism=Nannochloropsis gaditana|type=mRNA|length=2465bp
TTTGGGTAGGTCAAATTGAAATGCAGGCGACCAGTATTCGTCTTCGGGCC
CCTGGAGTGAGCTACCAGACAAGGAAAGTAGTCTTGGCGGCAGCATTGGC
GGGCGTGGAGCTTTCCGTCAGCCTGCAGGAAGATCCTGAAATTCTATCTA
GTCTTGTGCCGCATGGTAAATCTTTAGTTTTGGAAGTTCAATCGGCATCT
GGGAGTCCTTTCCTGATAGCCCGAAGCAATGTGGCTTTGCGATTCTTGGC
AGAGAATTCTCCAGCTGCTGGCTTGTACGGAGAAACGCTTTACGAGGCTG
GTCTTGTAGATCAATGGCTAGATTTTTCGTTCAATAGTTTGGAAACACCA
GCGGCTGTAATGCACCTGCCTCCCGATGCACAAGTGCCGTTGGCGGTGAA
GGAGACGGCACGCCGGGAGGTTGAGGGGGCCGTGAGGGTCTTGGACGAGG
CCTTGGAGAAGTCCACTTTCTTGGCGGGTCACAAGGTCACCCTAGCAGAC
GTGGGAGTTTTTTGTGCGCTCTATGATTTGGTAGGTGTAGAGAACGCCGG
GTCAATGAGTATAGCGCTGGAGAACTTCCCTGGCGTCCTGCGCTGGTTTT
TAACCCTGCTCCACCAGCCCTGCTTCCAGCACGTTTCACCGGGAGAAGCG
GACAAGATGAAGCGATTGCAAGCCAAACTGCCCAGTGTGGGGTCGACAAG
ACGGAAGCTGGCGGAGGGACCGCTGGCAGAGAACGGGAACCGCCGTCCTA
GCAAGGCTGGAATAGCCGGGGCGCGAGCGACGCAGGCGTCCGCGGCCAAA
AGCGGGCCTGCCGGGGGGGGGAGAAGCAGCACCAAGCCACCACTCTTGCC
TAAGGATGGCCCGGACTCGTCCTTGTTTGACCGGAGGCGGACAGTTATCA
AGCAGCTCCTGGTGGAGCGGGGAGAAGCTGCCGTGGGGGAGACGGTGACG
ATCAAGGGCTGGGTGCGCACCATCCGGGCTGGCAACAAGGGGGCCCTGCT
CTTCATCGAGCTGAACGACGGCTCTACCGCCTTGTCGATGCAGGCGGTAT
TGGAGGCGGACAAAACGCAGGGTTTCGCAGAGGCGACGCCCGCGAGCTGC
GGCGGAGTGGGGGCTTCCTTCTCGATCACAGGGACTTTGGTCCGGAGCCC
CGCCGAGGGGCAGGCGGTAGAGCTGCACGCGACGGTCGTGGAGGTGCTGG
GGAAGGTCTATGGCGGCGAGGACGGGGGCGTGGGGGGAAAGCTGTACCCT
TTAAGCAAAAAGGCGCACTCGATGGAGTACCTCCGTTGCAACGCACACCT
GCGGGCCCGGACCCGGGTGACCGGTAGCGTCATGCGCGTACGGCATGCCA
TGGCCTACGCCACGCACAAGTTCTTCAACGACCGGGGATTCAAGTACGTG
CACACGCCCCTGATAACCGGGGCGGACTGCGAGGGGGCGGGAGAGATGTT
CACCGTAACGACTCTCTTGCCGGAGAAAGGCGCCCCCAGGCTCCCCATCC
GCCCGGACGGTTCCATCGATTATTCCCAGGATTTCTTCGGCCGTCGCACG
TCTCTGACAGTGTCGGGGCAGCTGAATGTGGAGACCTACGCCTGCGGGCT
CTCGGATGTGTACACCTTCGGACCCACCTTCCGTGCCGAGAACTCCCACA
CGACCAGGCACCTGGCCGAGTTCTGGATGATCGAGCCGGAGATCGCTTTC
GCTGATCTGGAGATGGACATGGCCTTGGCGGAGGATTACCTCAAGTACTG
TGTCTGGTACGCCCTGAGGCACAATGAGGAGGACCTTGTGTTGCTGGAAA
AGGTGCCAGGCGGGGAGGCGGGCCTGCGGGAGAGGTTGCGAAACGTGCTG
GAGAACCCTTTCGTGCGCATCACGTACACGGAGGCGGTTGCCACGTTGGA
GAAGGATCTAGCGGCTGAAAAGGTGGCGTTCCAAGTGAAGCCCGAATGGG
GCTGCGACCTCGGAAGCGAGCACGAACGCTACCTAACGGAGCAGGTGTAC
AAGCGGCCCGTCATCGTCACCAACTACCCGAAGGATATCAAGGCCTTCTA
CATGCGCCTGGACGAGGACGGGAAGACCGTGTCAGCCATGGACATCCTTG
TCCCTAAGATTGGCGAGATCATCGGCGGATCGCAGAGGGAAGAGCGATTG
GATGTGTTGAAGGCCCGATGCCGTGAGATGGGGCTGGAAGAGGCCGCTTT
GTGGTGGTACTTGGACCTGAGGAGGTACGGCTCGCATAAGCACGCGGGCT
TCGGGCTGGGCTTCGAACGTCTCATTTTGTTCATCACGGGCTTGGAGAAC
ATTCGGGACGTGATTCCCTTCCCTCGCTTCCCGGCGCACGCAGAGTTTTG
ATTTTTATGCAGGTCAATGGGGGGCGGGAAAGGGATTTTGGGGGTAGAGG
AGCACGATACATGGCTCCTAGTGCCGAAATCGGATGGGAAAGCTATCACT
TTATTTTCTTTGTCT

protein sequence of rna6380

>rna6380-protein ID=rna6380-protein|Name=rna6380|organism=Nannochloropsis gaditana|type=polypeptide|length=248bp
MSSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGP
EDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLK
RDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARL
LTSVHARRKVNGSSENMIRSASRDSMSLEKEVKLVEGEDAADGFSKKSVE
ESMGEGETKGVLGSPNLPGLMKRKGDPNQKEAASSMDKRLKKKGLKRL

mRNA from alignment at CM002468.1:386140..387890-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6380 ID=rna6380|Name=rna6380|organism=Nannochloropsis gaditana|type=mRNA|length=1751bp|location=Sequence derived from alignment at CM002468.1:386140..387890- (Nannochloropsis gaditana)
CCGGGCTCTCACCTCGTAACTCCCCCAACGACGAGCGACTGCCTGATCGC
TCTCCTTTGTCTTGCAAGAAGTTGCATGTCATGGTTTTGGATTTCTCACT
TTGCGGAGACAGCGCCGCAGTGGTACCACACTGTTTAAGGATTACTTTAC
GTGCAAAGGTTTTGCGTATCGTAACACTTGACCTGTTTCCACAACTTTTG
CAGGCTCTCCCCCAAGGCTTGAATCCCATTTTTAACCGCTGCTGGTTGTT
AACTTCCAGTGATCATATCAGAAAACCATAAGCGCATAATTCAGTCAATA
TCGTGGACATGTCATCGTACGAGAATTTGTCTCCACAAGTCATCACGCGA
ATTGCCCGTGAAATTCAGGATCTGGTGCGAAAGCCCTCGCCTGGTAAGTC
GGAGCGTTGAAGGTGGATGGGAGCTTAAAAAATCTTTTAAAATCTCGATG
ATAGGTCTTCCAAAGCACTTGCCCTTCTGTAAAGGGTGGCTTTAAAAGTG
GCTGATGACACGTGACTGCATGGTCGGGTGGTGGTCTAACAGCATCTCGC
CCAATCTCCACTTATATTTTCTTACCTCTTCTGTAACAGGCATTCGGCTG
GCGCAAAACAATTGCGACAACATCGCAGAGGTCCACGCAGAGATCGATGG
TCCCGGTGAGTTAATTTTAATGTTTGCAAGGAATGCGTGTACTTGTCTAA
AATGCCTCTCACGCTACTCGGCATACTTGTTCTTCCCACACATACAGAAG
ACACACCATATGTCGACGGGACTTTCCATGTGAAACTCGTGCTCAGTCAA
GATTTTCCAAACTCGCCTCCTCGCGGGTACTTCTTGACCAGGATCTACCA
CCCAAACGTGAGCAGTGCCGGTGACATCTGTGTGAACACCTTAAAGCGGG
ACTGGTCACCCTCTGTTACATTGGCCCACGTCCTGCAAGTCATCCGCTGT
CTGTTGATTGTGCCCTTCCCCGAGTCTTCTTTGAACGATGAGGCGGGAAA
GCAATTCATGGAGTCGTACGCAGACTACGCCAGGCGGGCGCGCTTGCTGA
CATCAGTCCATGCAAGGAGAAAGGTTAATGGGAGCAGTGAGAACATGATT
CGAAGCGCTTCAAGAGATAGCATGAGCCTAGAAAAGGAAGTAAAACTGGT
GGAGGGAGAGGATGCGGCGGATGGTTTCAGCAAGAAGAGCGTTGAAGAAA
GTATGGGCGAGGGGGAGACCAAAGGAGTCCTTGGGTCGCCCAATCTGCCG
GGGCTAATGAAGAGGAAAGGGGACCCCAATCAAAAGGAAGCCGCCTCCTC
CATGGACAAACGGTTGAAGAAGAAGGGTCTCAAGAGGCTTTGATGGAGGA
TGTTTCTACATACGTGTGAGTTAGAAGTTTGCGACGGGTAGTCCTCGATG
GATGACGTGGAGGGAGGGGGGATAGAATTAGGCAGTGTGTGATGGTGTCT
GTCGCGTTCCCAATCTGGACAGTCGGGATTTCTGCGCCACAAGATTAGAA
AACGACGACAGATACACCAGAAGGCACACGAAATGGAAGCGCCTCTCAAG
GGAAGGGTGTCCTGGACTTCCGTTTTTTGGTTTTATTGTCATGTATGTAT
ATAAGTGCAGCAACTGCGTCAAATGGGACGAGATGATGCGATCTCGGGTA
TTTATAAGGTCGAATTCCTTTAAATCTTTAACAACCACCTGGTAGGCTTT
TTGAAATTAAAGAAAAAGAAAAAAAGAATGCATTCGCCATGTGATACCAA
T

Coding sequence (CDS) from alignment at CM002468.1:386140..387890-

>rna6380 ID=rna6380|Name=rna6380|organism=Nannochloropsis gaditana|type=CDS|length=2241bp|location=Sequence derived from alignment at CM002468.1:386140..387890- (Nannochloropsis gaditana)
AAGACACACCATATGTCGACGGGACTTTCCATGTGAAACTCGTGCTCAGT
CAAGATTTTCCAAACTCGCCTCCTCGCGGGTACTTCTTGACCAGGATCTA
CCACCCAAACGTGAGCAGTGCCGGTGACATCTGTGTGAACACCTTAAAGC
GGGACTGGTCACCCTCTGTTACATTGGCCCACGTCCTGCAAGTCATCCGC
TGTCTGTTGATTGTGCCCTTCCCCGAGTCTTCTTTGAACGATGAGGCGGG
AAAGCAATTCATGGAGTCGTACGCAGACTACGCCAGGCGGGCGCGCTTGC
TGACATCAGTCCATGCAAGGAGAAAGGTTAATGGGAGCAGTGAGAACATG
ATTCGAAGCGCTTCAAGAGATAGCATGAGCCTAGAAAAGGAAGTAAAACT
GGTGGAGGGAGAGGATGCGGCGGATGGTTTCAGCAAGAAGAGCGTTGAAG
AAAGTATGGGCGAGGGGGAGACCAAAGGAGTCCTTGGGTCGCCCAATCTG
CCGGGGCTAATGAAGAGGAAAGGGGACCCCAATCAAAAGGAAGCCGCCTC
CTCCATGGACAAACGGTTGAAGAAGAAGGGTCTCAAGAGGCTTTGAGCAT
TCGGCTGGCGCAAAACAATTGCGACAACATCGCAGAGGTCCACGCAGAGA
TCGATGGTCCCGATGTCATCGTACGAGAATTTGTCTCCACAAGTCATCAC
GCGAATTGCCCGTGAAATTCAGGATCTGGTGCGAAAGCCCTCGCCTGAAG
ACACACCATATGTCGACGGGACTTTCCATGTGAAACTCGTGCTCAGTCAA
GATTTTCCAAACTCGCCTCCTCGCGGGTACTTCTTGACCAGGATCTACCA
CCCAAACGTGAGCAGTGCCGGTGACATCTGTGTGAACACCTTAAAGCGGG
ACTGGTCACCCTCTGTTACATTGGCCCACGTCCTGCAAGTCATCCGCTGT
CTGTTGATTGTGCCCTTCCCCGAGTCTTCTTTGAACGATGAGGCGGGAAA
GCAATTCATGGAGTCGTACGCAGACTACGCCAGGCGGGCGCGCTTGCTGA
CATCAGTCCATGCAAGGAGAAAGGTTAATGGGAGCAGTGAGAACATGATT
CGAAGCGCTTCAAGAGATAGCATGAGCCTAGAAAAGGAAGTAAAACTGGT
GGAGGGAGAGGATGCGGCGGATGGTTTCAGCAAGAAGAGCGTTGAAGAAA
GTATGGGCGAGGGGGAGACCAAAGGAGTCCTTGGGTCGCCCAATCTGCCG
GGGCTAATGAAGAGGAAAGGGGACCCCAATCAAAAGGAAGCCGCCTCCTC
CATGGACAAACGGTTGAAGAAGAAGGGTCTCAAGAGGCTTTGAGCATTCG
GCTGGCGCAAAACAATTGCGACAACATCGCAGAGGTCCACGCAGAGATCG
ATGGTCCCGATGTCATCGTACGAGAATTTGTCTCCACAAGTCATCACGCG
AATTGCCCGTGAAATTCAGGATCTGGTGCGAAAGCCCTCGCCTGAAGACA
CACCATATGTCGACGGGACTTTCCATGTGAAACTCGTGCTCAGTCAAGAT
TTTCCAAACTCGCCTCCTCGCGGGTACTTCTTGACCAGGATCTACCACCC
AAACGTGAGCAGTGCCGGTGACATCTGTGTGAACACCTTAAAGCGGGACT
GGTCACCCTCTGTTACATTGGCCCACGTCCTGCAAGTCATCCGCTGTCTG
TTGATTGTGCCCTTCCCCGAGTCTTCTTTGAACGATGAGGCGGGAAAGCA
ATTCATGGAGTCGTACGCAGACTACGCCAGGCGGGCGCGCTTGCTGACAT
CAGTCCATGCAAGGAGAAAGGTTAATGGGAGCAGTGAGAACATGATTCGA
AGCGCTTCAAGAGATAGCATGAGCCTAGAAAAGGAAGTAAAACTGGTGGA
GGGAGAGGATGCGGCGGATGGTTTCAGCAAGAAGAGCGTTGAAGAAAGTA
TGGGCGAGGGGGAGACCAAAGGAGTCCTTGGGTCGCCCAATCTGCCGGGG
CTAATGAAGAGGAAAGGGGACCCCAATCAAAAGGAAGCCGCCTCCTCCAT
GGACAAACGGTTGAAGAAGAAGGGTCTCAAGAGGCTTTGAGCATTCGGCT
GGCGCAAAACAATTGCGACAACATCGCAGAGGTCCACGCAGAGATCGATG
GTCCCGATGTCATCGTACGAGAATTTGTCTCCACAAGTCATCACGCGAAT
TGCCCGTGAAATTCAGGATCTGGTGCGAAAGCCCTCGCCTG

Synonyms

Publications