EWM24313.1, cds6365 (CDS) Nannochloropsis gaditana

Overview
NameEWM24313.1
Unique Namecds6365
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:387498..387582 -
Alignment locationCM002468.1:387236..387301 -
Alignment locationCM002468.1:386548..387143 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24313.1
Productubiquitin-conjugating enzyme
Orig transcript idgnl|cribi|Naga_100047g22.6076.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:387498..387582 -
CM002468.1supercontigCM002468.1:387236..387301 -
CM002468.1supercontigCM002468.1:386548..387143 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR023313UBQ-conjugating_AS
IPR016135UBQ-conjugating_enzyme/RWD
IPR000608UBQ-conjugat_E2
Homology
BLAST of EWM24313.1 vs. NCBI_GenBank
Match: gi|585105705|gb|EWM24313.1| (ubiquitin-conjugating enzyme [Nannochloropsis gaditana])

HSP 1 Score: 513.072 bits (1320), Expect = 0.000e+0
Identity = 248/248 (100.00%), Postives = 248/248 (100.00%), Query Frame = 0
Query:    1 MSSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARRKVNGSSENMIRSASRDSMSLEKEVKLVEGEDAADGFSKKSVEESMGEGETKGVLGSPNLPGLMKRKGDPNQKEAASSMDKRLKKKGLKRL 248
            MSSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARRKVNGSSENMIRSASRDSMSLEKEVKLVEGEDAADGFSKKSVEESMGEGETKGVLGSPNLPGLMKRKGDPNQKEAASSMDKRLKKKGLKRL
Sbjct:    1 MSSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARRKVNGSSENMIRSASRDSMSLEKEVKLVEGEDAADGFSKKSVEESMGEGETKGVLGSPNLPGLMKRKGDPNQKEAASSMDKRLKKKGLKRL 248          
BLAST of EWM24313.1 vs. NCBI_GenBank
Match: gi|298705357|emb|CBJ28647.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 244.973 bits (624), Expect = 1.209e-77
Identity = 109/163 (66.87%), Postives = 131/163 (80.37%), Query Frame = 0
Query:    1 MSSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARRKVNGS 163
            +SS+EN+SPQVI+R+ REIQDL R P  GIR      D IAE+HAEI GP  TPY  G+FH+KLVLS DFP+SPPRG+FLT+IYHPNV+  GDICVNTLKRDW+  VTL HVLQVIRCLLIVPFPESSLNDEAG+ FMESY +Y RR ++  +VHA + ++ +
Sbjct:   10 LSSFENISPQVISRVGREIQDLQRNPPDGIRFLPQEEDTIAEIHAEIKGPVGTPYDGGSFHIKLVLSNDFPHSPPRGFFLTKIYHPNVAPNGDICVNTLKRDWTAEVTLTHVLQVIRCLLIVPFPESSLNDEAGRLFMESYTEYERRVKVWVNVHASKSLSSA 172          
BLAST of EWM24313.1 vs. NCBI_GenBank
Match: gi|1173929904|gb|OQR83062.1| (ubiquitin-conjugating enzyme E2 [Achlya hypogyna])

HSP 1 Score: 231.491 bits (589), Expect = 2.279e-73
Identity = 99/155 (63.87%), Postives = 128/155 (82.58%), Query Frame = 0
Query:    2 SSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHA 156
            S++EN SPQ++ R+A+E++ L   P  GIRL + + D++AE+H EI GPE+TPYV G F VKL+L++ FP  PP+G FLT+I+HPN+++ GDICVNTLKRDWS  + L+HVLQVIRCLLIVPFPESSLNDEAGK FME Y +YARRA++LTS+HA
Sbjct:    7 SAHENFSPQILQRVAKEVRQLASSPPAGIRLLETDSDSLAEIHVEISGPEETPYVGGFFEVKLLLTEGFPTVPPKGVFLTKIFHPNIAANGDICVNTLKRDWSADLDLSHVLQVIRCLLIVPFPESSLNDEAGKLFMECYDEYARRAKILTSIHA 161          
BLAST of EWM24313.1 vs. NCBI_GenBank
Match: gi|673038620|ref|XP_008873271.1| (hypothetical protein H310_09084 [Aphanomyces invadans] >gi|574471388|gb|ETV98396.1| hypothetical protein H310_09084 [Aphanomyces invadans])

HSP 1 Score: 229.565 bits (584), Expect = 1.488e-72
Identity = 101/179 (56.42%), Postives = 139/179 (77.65%), Query Frame = 0
Query:    1 MSSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARRKVNGSSENMIRSASRDSMSLE 179
            MS++EN SPQ+I R+A+EI+ L   P  GIR    + +++AE+H E+ GPEDTPY  G F +KL+L++ FP  PP+G+FLT+I+HPNV++ GDICVNTLKRDW   + L+HVLQVIRCLLIVPFPESSLNDEAGK FME Y++YA+RAR+LT++HA +     ++N I   + +S+++E
Sbjct:    1 MSAHENFSPQIIQRVAKEIRQLATNPPAGIRYLPQDDESLAEIHVELVGPEDTPYAGGFFEMKLLLTEGFPTVPPKGHFLTKIFHPNVAANGDICVNTLKRDWCADLDLSHVLQVIRCLLIVPFPESSLNDEAGKLFMECYSEYAQRARILTTIHASKT---KAKNTIDETTSNSLTIE 176          
BLAST of EWM24313.1 vs. NCBI_GenBank
Match: gi|698809480|ref|XP_009837769.1| (hypothetical protein H257_12307 [Aphanomyces astaci] >gi|574107470|gb|ETV72983.1| hypothetical protein H257_12307 [Aphanomyces astaci])

HSP 1 Score: 228.024 bits (580), Expect = 5.569e-72
Identity = 100/158 (63.29%), Postives = 128/158 (81.01%), Query Frame = 0
Query:    1 MSSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARR 158
            MS++EN SPQ+I R+A+EI+ L   P  GIR    + +++AE+H E+ GPEDTPY  G F +KL+L++ FP  PP+G+FLT+I+HPNV+S GDICVNTLKRDWS  + L+HVLQVIRCLLIVPFPESSLNDEAGK FME Y +YA+RAR+LTS+HA +
Sbjct:    2 MSAHENFSPQIIQRVAKEIRQLATNPPSGIRYLPQDDESLAEIHVELVGPEDTPYAGGFFEMKLLLTEGFPTVPPKGHFLTKIFHPNVASNGDICVNTLKRDWSADLDLSHVLQVIRCLLIVPFPESSLNDEAGKLFMECYDEYAQRARILTSIHASK 159          
BLAST of EWM24313.1 vs. NCBI_GenBank
Match: gi|695394124|ref|XP_009520800.1| (hypothetical protein PHYSODRAFT_326520 [Phytophthora sojae] >gi|348685697|gb|EGZ25512.1| hypothetical protein PHYSODRAFT_326520 [Phytophthora sojae])

HSP 1 Score: 227.639 bits (579), Expect = 2.643e-71
Identity = 114/213 (53.52%), Postives = 147/213 (69.01%), Query Frame = 0
Query:    5 ENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSS-AGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARRKVNGSSENMIRSASRDSMSLEKEVKLVEGEDAADGFSKKSVEES-MGEGETKGVLGSP 215
            ENL PQV  R+ARE++ LV +P  GIR    + + ++E+HAEI GPEDTPY  G F VKL L++ FP  PPRG FLT+I+HPNVS  AGDICVNTLK+DW P++ LAHVLQV+RCLLIVPFPESSLNDEAGK F++SY +YARRA+L T++HA ++   +SE    ++  D    EK+ K    ED      K+  E++   E E    L +P
Sbjct:    8 ENLPPQVAQRVARELRKLVLQPLDGIRYLPQDEEQLSEIHAEIRGPEDTPYEGGYFTVKLTLTESFPEQPPRGVFLTKIFHPNVSQPAGDICVNTLKKDWKPTLGLAHVLQVVRCLLIVPFPESSLNDEAGKLFLDSYDEYARRAKLWTNIHAPKRSAVASEESGDTSGED----EKKDKPTANEDGDKTQHKRPAEDAPNAEAEKDAALSTP 216          
BLAST of EWM24313.1 vs. NCBI_GenBank
Match: gi|669151880|ref|XP_008611502.1| (ubiquitin-conjugating enzyme E2 S [Saprolegnia diclina VS20] >gi|530736976|gb|EQC35218.1| ubiquitin-conjugating enzyme E2 S [Saprolegnia diclina VS20])

HSP 1 Score: 225.328 bits (573), Expect = 4.723e-71
Identity = 101/174 (58.05%), Postives = 135/174 (77.59%), Query Frame = 0
Query:    1 MSSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARR-KVNGSSENMIRSASR 173
            M+++EN SPQ++ R+A+E++ L   P  GIRL +   D++AE+H E+ GPE+TPYV G F VKL+L+  FP +PP+G FLT+I+HPN++S GDICVNTLKRDWS  + L+HVLQVIRCLLIVPFPESSLNDEAGK FME Y +YARRA++LT +HA + K    +E+   +A +
Sbjct:    1 MAAHENFSPQILQRVAKEVRQLATNPPEGIRLLEQ--DSLAEIHVELRGPEETPYVGGFFEVKLLLTDGFPTTPPKGVFLTKIFHPNIASNGDICVNTLKRDWSADLDLSHVLQVIRCLLIVPFPESSLNDEAGKLFMECYDEYARRAKILTDIHATKSKFKTDAESTASAAPK 172          
BLAST of EWM24313.1 vs. NCBI_GenBank
Match: gi|813199704|ref|XP_012209423.1| (hypothetical protein SPRG_14896 [Saprolegnia parasitica CBS 223.65] >gi|641525405|gb|KDO19866.1| hypothetical protein SPRG_14896 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 224.942 bits (572), Expect = 6.411e-71
Identity = 101/176 (57.39%), Postives = 134/176 (76.14%), Query Frame = 0
Query:    1 MSSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARR---KVNGSSENMIRSASR 173
            M+++EN SPQ++ R+A+E++ L   P  GIRL +   D++AE+H E+ GPE+TPYV G F VKL+L+  FP +PP+G FLT+I+HPN++  GDICVNTLKRDWS  + L+HVLQVIRCLLIVPFPESSLNDEAGK FME Y +YARRA++LT +HA +   K   +  N + SA +
Sbjct:    1 MAAHENFSPQILQRVAKEVRQLATNPPDGIRLLEQ--DSLAEIHVELRGPEETPYVGGFFEVKLLLTDGFPTTPPKGVFLTKIFHPNIAPNGDICVNTLKRDWSADLDLSHVLQVIRCLLIVPFPESSLNDEAGKLFMECYDEYARRAKILTDIHATKSKFKTTDAGSNAVSSAPK 174          
BLAST of EWM24313.1 vs. NCBI_GenBank
Match: gi|1173960829|gb|OQS06918.1| (ubiquitin-conjugating enzyme E2 [Thraustotheca clavata])

HSP 1 Score: 223.016 bits (567), Expect = 4.182e-70
Identity = 95/158 (60.13%), Postives = 127/158 (80.38%), Query Frame = 0
Query:    1 MSSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSSAGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARR 158
            MS++EN SPQ++ R+A+EI+ L   P  GIRL + +  ++AE+H E+ GPE+TPYV G F VKLVL+  FP  PP+G FLT+I+HPN++S G+ICVNTLKRDW+  +  +H+LQVIRCLLIVP+PESSLND+AGK FME Y +YARRA++LTS+HA +
Sbjct:    1 MSTHENFSPQIVQRVAKEIRQLATNPPIGIRLLEQDDASLAEIHVEVTGPEETPYVGGFFEVKLVLTDGFPAVPPKGVFLTKIFHPNIASNGEICVNTLKRDWNADLDFSHILQVIRCLLIVPYPESSLNDKAGKLFMECYEEYARRAKILTSIHATK 158          
BLAST of EWM24313.1 vs. NCBI_GenBank
Match: gi|953490562|emb|CEG46216.1| (ubiquitin-conjugating enzyme [Plasmopara halstedii])

HSP 1 Score: 219.935 bits (559), Expect = 1.719e-68
Identity = 121/251 (48.21%), Postives = 166/251 (66.14%), Query Frame = 0
Query:    1 MSSYENLSPQVITRIAREIQDLVRKPSPGIRLAQNNCDNIAEVHAEIDGPEDTPYVDGTFHVKLVLSQDFPNSPPRGYFLTRIYHPNVSS-AGDICVNTLKRDWSPSVTLAHVLQVIRCLLIVPFPESSLNDEAGKQFMESYADYARRARLLTSVHARRKVNGSSENMIRSASRDSMS-LEKEVKLVEGEDAADGFSKKSVEESMGEGETKGV-LGSPNLPGLMKRKGDPNQKEAASSMDKRLKKKGLKRL 248
            M + ENLS +V  R+ARE++ LV +P  GIR   ++ + ++E++AEI GPEDTPY  G F ++L L+++FP  PPRG FLT+I+HPNVS  AGDICVNTLK+DW  S+ LAHVLQVIRCLLIVPFPESSLN+EAGK F++SY +YARRA+L TS+HA +          RSA    M+   KE      +++ +   K+S ++S+     K + L +P     MK+     Q    +S+ K +KKK +KRL
Sbjct:    1 MLTRENLSHEVAQRVARELRKLVMQPLDGIRYLPHDKEQLSEIYAEIRGPEDTPYQGGFFKLRLTLAENFPQQPPRGVFLTKIFHPNVSQPAGDICVNTLKKDWKASLGLAHVLQVIRCLLIVPFPESSLNEEAGKLFLDSYDEYARRAKLWTSIHAPK----------RSALDKEMNETSKEESFDNDQNSNNNELKRSADQSVNLTSKKEITLSTP-----MKKMKI--QSNVENSLRKMVKKKAVKRL 234          
The following BLAST results are available for this feature:
BLAST of EWM24313.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105705|gb|EWM24313.1|0.000e+0100.00ubiquitin-conjugating enzyme [Nannochloropsis gadi... [more]
gi|298705357|emb|CBJ28647.1|1.209e-7766.87conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173929904|gb|OQR83062.1|2.279e-7363.87ubiquitin-conjugating enzyme E2 [Achlya hypogyna][more]
gi|673038620|ref|XP_008873271.1|1.488e-7256.42hypothetical protein H310_09084 [Aphanomyces invad... [more]
gi|698809480|ref|XP_009837769.1|5.569e-7263.29hypothetical protein H257_12307 [Aphanomyces astac... [more]
gi|695394124|ref|XP_009520800.1|2.643e-7153.52hypothetical protein PHYSODRAFT_326520 [Phytophtho... [more]
gi|669151880|ref|XP_008611502.1|4.723e-7158.05ubiquitin-conjugating enzyme E2 S [Saprolegnia dic... [more]
gi|813199704|ref|XP_012209423.1|6.411e-7157.39hypothetical protein SPRG_14896 [Saprolegnia paras... [more]
gi|1173960829|gb|OQS06918.1|4.182e-7060.13ubiquitin-conjugating enzyme E2 [Thraustotheca cla... [more]
gi|953490562|emb|CEG46216.1|1.719e-6848.21ubiquitin-conjugating enzyme [Plasmopara halstedii... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6380rna6380Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications