rna6377, rna6377 (mRNA) Nannochloropsis gaditana

Overview
Namerna6377
Unique Namerna6377
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1476
Alignment locationCM002468.1:380365..380823 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100047g19.6071.mrna
Orig protein idgnl|cribi|Naga_100047g19.6071
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:380365..380823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100047g19gene6161Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6377rna6377-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24308.1cds6362Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6377 ID=rna6377|Name=rna6377|organism=Nannochloropsis gaditana|type=mRNA|length=1476bp
ATGGAAGGAAATGGTGGCATCGATAGCAAGTCAGGCAGCCTTATGGAGGA
GGGTGGCTTGCGGAGCTCCTTGGCCAGCGGGGAGAAAGGAATGCAGCCCA
TGGAAGTGGAAATGTCGGGGCCGGCGGCTTCCACCCTCTTTGGCGGAGAC
GCTCAGCTGTTGAAGCCGAAGAGCCTCCGGCGGGGAAGCAGCACCTCCTC
GACCAAGCCCGAGGCCCCGGTCAAGCGCAGCAGCAGCCAGATGGACGTGA
ACACAGCGAGTGGGATGATTTGGCTGGCTGTTTGCTTCGTGGGTATCATG
GGCTCGTTTATCGCCTACGGGATCGTCATGGAATACGCCACCTCTGGCGG
CCGCAAGCTCCATGAGCTCTCCCTCATTTTCGTCACCTCTCTCCTCTACA
GCGGCACGGCCTACGTAGGCAGGTACGTCCGCGCCGAGAAGCCCACCACG
GTGGCCCCGGCCCGGCTGATGGTGCTGGCCATGACCTCGATGGGGTCCAC
CTACTGCTCCGTCCGCTCTCTGCGCTACGTCATCTACCCCGTCCAGGTCC
TAGCCAAGTCCTGTAAGCCCATCCCAGTCATGCTCATGGGCGCGATCATG
GGCAAGAAGTATCCGCTCAAGAAATACGTAAACGTGCTGATCATAACAGC
GGGTGTGGCCATGTTCATGATGGGGCGGCAGAAAGAGGGGGGGGAGGGTG
CCGAGGGCCGGGCGGCCAGCAAGGCGAAGGAGAACGCGACGACGGCGGGG
GCGATCCTGCTTTTCATTTCGCTTTGCTTCGACGGCGGCACCGGAGCGTA
CGAGGACAAACTCATGGCCAAGCACCATGTGGGCCCCTTTGACCTCATGT
ACAACATGCACCTGGGCAAGGCCATCTTGGCCGGTCTGGGGCTCATCGTC
CTCGGCCAGATCAACTATTTCATCCGCATGTGCCATGAGACTGGCTTCTT
CCTCCTTCTCCTGGGCGTCTCCGGGGCCTTTGGGCAGGTTTTCATCTTCG
TCACAATCTCCAAGTTCGGGGCTCTGACTTGCTCGATCATGGGCCTGGCC
CGCAAGGTCGTGACTCTGGTCGCCTCCATCTACATCTATGGCCACTCTTT
GAACGGAATCCAGACGTTGGGGCTAGTGGTGGCCTTTGCCGCGATGATCT
CGGGGTTTTTTGAGCGGAAAGGGAAAGGGGCCCACGGACATGGTCATGCG
GGCGGGGGGGGAAACGCAGGTAAGACGGAGCCCCTCGATAGGGAAGGAGG
AAGCATGGAGGATGGACGACTGAATGGGGGTGTAGACAAGAGTGCCATCA
GATCTTTGGTGGAGGAAGAGAGAAGAGCACACTTGCAGTCGGAGGCGAAG
CCACTCTTAGCAGCAACGGACGACGGGCCCGAGGAGGAGGAGAGGGAAGG
AAAATGGGGAGAAAGGGTTGACATGTGGGTAGTTGAAATAGGATTTCCGA
ACGACAAAACGAATTTAGATGGGTGA
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protein sequence of rna6377

>rna6377-protein ID=rna6377-protein|Name=rna6377|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MNPMSSALDDHDLQCMHLGSHGCIARRADVFDADALRTQTASTHAGDNGM
TAAVRHQSIQQQGPRVWEWSVVI
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mRNA from alignment at CM002468.1:380365..380823-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6377 ID=rna6377|Name=rna6377|organism=Nannochloropsis gaditana|type=mRNA|length=459bp|location=Sequence derived from alignment at CM002468.1:380365..380823- (Nannochloropsis gaditana)
ATGAACCCAATGTCTTCAGCCTTGGATGACCATGACTTGCAATGCATGTA
AAGAAGGGGAAACAAGGCTGAGAGGTGCTTTTTATTTCTAAATCTCCTGT
GGGTGGCGCTAGGGCGGCTGGACAGGTTGTGCGAAGCCTCGCGAGGTCTC
GACGAAGAATTCTTAGCGAGCCTTTATGTCTGCGATTTCCCTGTCCTTGG
TGCCGACTCCGACACACACACACGCACTCAGTCGCACGGCTTATGAGCTT
TCGCTCCTCTTTCCGCATCGAATACGCTCGCTAGGCATCTTGGCAGCCAC
GGCTGCATCGCCAGGCGCGCGGACGTCTTCGACGCGGACGCATTGAGAAC
ACAAACGGCGAGCACTCACGCAGGGGACAACGGAATGACGGCGGCGGTGC
GGCATCAATCCATTCAACAGCAAGGGCCGCGAGTGTGGGAGTGGAGCGTC
GTGATTTGA
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Coding sequence (CDS) from alignment at CM002468.1:380365..380823-

>rna6377 ID=rna6377|Name=rna6377|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at CM002468.1:380365..380823- (Nannochloropsis gaditana)
GCATCTTGGCAGCCACGGCTGCATCGCCAGGCGCGCGGACGTCTTCGACG
CGGACGCATTGAGAACACAAACGGCGAGCACTCACGCAGGGGACAACGGA
ATGACGGCGGCGGTGCGGCATCAATCCATTCAACAGCAAGGGCCGCGAGT
GTGGGAGTGGAGCGTCGTGATTTGAATGAACCCAATGTCTTCAGCCTTGG
ATGACCATGACTTGCAATGCATGCATCTTGGCAGCCACGGCTGCATCGCC
AGGCGCGCGGACGTCTTCGACGCGGACGCATTGAGAACACAAACGGCGAG
CACTCACGCAGGGGACAACGGAATGACGGCGGCGGTGCGGCATCAATCCA
TTCAACAGCAAGGGCCGCGAGTGTGGGAGTGGAGCGTCGTGATTTGAATG
AACCCAATGTCTTCAGCCTTGGATGACCATGACTTGCAATGCAT
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Synonyms
Publications