rna6372, rna6372 (mRNA) Nannochloropsis gaditana

Overview
Namerna6372
Unique Namerna6372
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3033
Alignment locationCM002468.1:372469..373710 -

Link to JBrowse

Properties
Property NameValue
Productribosomal protein s25
Orig transcript idgnl|cribi|Naga_100047g14.6057.mrna
Orig protein idgnl|cribi|Naga_100047g14.6057
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:372469..373710 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100047g14gene6156Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6372rna6372-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24294.1cds6357Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6372 ID=rna6372|Name=rna6372|organism=Nannochloropsis gaditana|type=mRNA|length=3033bp
CCACAGTACTTGCTTCGTAGATGCCACGAGGTTTCTAGGGTGCCTCCGGC
TTCCCTCTTTCGCCTTCCCACTCCAGCTCCTTCATTAGCGTCATGGCGTC
TGGCATATATTTTGATCTTCCCGGCTTTGATCTTCTCCGCCCCGTGATCC
CTGCCTCTTCTGCGCGCAAACATGAAGTTGTGGGAAAATGGAAGCCTGAC
GCGTCCAACTTTTCGATGAATCTGCCGACAGTAAGCAGCGTGGAACGAAG
CGTCCTTGAGGACAGGCGGCGGAAGCAAAGACGCTTGGAAAAAGATCGAG
AATTCGCATGCACCCCATCAATGAAGCTGGACGACAAAGAAGACGATGAG
GGGGGACTAACGGGGTGCAGTGCAGGCGAGTTGTCTTCAATGCAGCAAGA
GCTGGAGTCGTCGTGGAACTGCGTCAAGTGCACGTTTCTAAACGCCCCTG
ATGACCGAAGCTGCGAGGCCTGCGGAGGCATAAGCCAGTGGCGCATTCGT
TTGCGCGAAAAGAAAGCTGCTGCAATGACGGCGCACCGACGGTGCGAGGA
GCGGGCGCAGGAGCAGCATCAAGAAAGATGTCGGGATCTGATGGATTTGG
AAGAGGAGGAGGAGACGGAGGAGGAGGAGGGGGGAAAGGGAGGACGAGTC
ATTTGTGTGGAGCAAGAGGTCCGGCCCTGCACGTCCACTGGTTTTGTCTC
GTCGTACGCGCATCCTTCTACAGCCGTCCCCGCCACCGAAGCTTTATCGA
CGTCTGCGAACGCTACCGCAAAGCTCCTGCGGGCCACACCCGTCCTGATC
CACGGCGGGGGCCCCTTTCAACTGCTGCCCTCGGACCTGCTGTTGCATTG
CCTATCTTTCCTGCACGAGGCTTCTGTCTACGCCGGCTTGAGGGCCGTGG
CCAAGCACTGGAACGAGGTGGCGGAGCACGAGAGTCTCTGGCGGGTGCTC
GCGGAGAAAGACTGGCAGGAGCCGAAGAGGCGGGCCTGTCTCTTGGGAGG
GGGCCCCTCGCGGGCAGGGCCGAGGTCGACGACGCCGGTTGCTACGGGCG
CTGCGGGCGGAAAGGAGCCGCGCACGCCGGGCTGGCCACCCAGTGCGGAC
GGGCGAGACTATGCCCGGACGCCTTCTGCTTCTTCCCCCGCCTTCCCTGC
CGCCCCGGCTACCTGGGCCTGCTCGGCCTGCGGGCTGCGGCAAGCCGATC
CCTTCGGCCTCAACTGTGAGTTTTGTTCCACGGAGCGCGAGATCATCCTG
CCTCCATCCGGGCCCCCGGCCGGTCGACCCACCGGGGGGGGAGAGGAGGA
AGCCTCGTGTTTCCGCGTGGTGAAGGACTACCAGGAGCTGGCGGAGATCT
GGAGGGACAGCAATGCCAAGGCAGCCGCAGCGGCTAGTGGGCAAGGGCGA
GACCACCGCCGGGGGCGGTTATCGCAGACAGGCGAGGGCATGTCGGGAAG
GGAGGAGAAGGCGGAGGAGAGCGGCGCGCAAGGAGCGGAGCTGGCCCCTT
TTCAAAGCGGCCTGCTTAAACCCGTTTCTCTTCTTGCCGCTTCCTCCCCT
CCCACCGCTTTGCCTTCATCCCTTGCTACCCTCACTCGGGCGCCCGCGTC
AGGGGAGAGAGAACGCGAGCAGGTGGGCCCGGTCCCGGAGGCCGGCGGCG
ACCCTGAGGCCGGGGTGGACGAGCAGGCCCGCTCGTTTATGGCGGGGACG
GGGAGGGAGAGCGCTTGGGAGGTGGCAGAGACGAGGACGGGCGATTTCTA
CTGGCTGTACAAGATGCGGGCACTGGACCGGATCTGGGCGGGGCGCTGGG
ACAGCCTGCACCGGGGCTGGGAGTGGCTGAGCAACTCCTGCCGGGTGGCC
CTCCGCGCCCGCCTGTACGCGACCCGGGAGCAGATCCACCAGCGCGACGA
CTCCCTCATCCCCATCACCTCCTCCTTCCAGAAGTGCGTGAACAAGCTGA
CCCGCCGAGACTGGCCCTTGCTCTGGGAGTGCATGCGGGCCGAGTTCGCC
CTCCAGGCAGAGGCCCTCCGTCGCGACATCATCCGCCACATGCGAGGCTC
CCGCTTGGAGGAGAAGGGCTTAGTGGCCGCCTATCGATTTTTCCTCCAGG
ATCTCCTCAAGTGCTTCGGGGTCTACACAGCCTGGGTCTTCGAGGTCTCC
TCCTTCTTCATGAAAATGAACGACCAGATCTCTGGAGAGAGCTTTCGCGC
CACCACGGCCTCCTTTGGGGGCTGCGGGGCCCTGGATGCGGCCAACACTC
CCTACCTGCCAGAGGTGGCCTTAGTCGCCTTCAGAGACCACGTGGTGCAG
CACTTCTCGATCCTGACGCCGGTGCTGCAAGTGGTAGAGGGGGACGGCGG
GCTGCGTCTGGCAGCCTTCTTCCAGAAAGGGGGAGACGAGGACCGTGGGG
CGGGAAGGGAGGCCCCTAGGCTCGGGGAAGAGGGAGGCTGTTTTAAGGGG
TCTTCGGTCCCCATGCCCCAACAAATGCGGCTGCTGGAGGTGGTAGAGCC
GGAGGAGAGCGAGGTGGACGAGAAGGTGCTCGCCACCCGAGGCATGTCTT
TCCGCGCCCTGCAAGCAGCCGCACGTCACGGATCCCACCGGCGTATCACC
ATGTACTTGGCTGAGGATCTAATCAAGCTGGGAAGGATGGCAGAGGAGCT
GGACGTGATGGAGCAGGGGAGTGCAAGTCAATGCGAGGCCTTCCGACGCT
TGCTCCTCAAGCCATTGCGAGCAACCTTGGCGGAGTTACGGGTCGATGGG
GTGGGGAGGTGTGAGGGGGGTGTACGAGGAGACGAAATCGGAGGCTGTGA
TAGGGAGGAGGCGCTGGAGATGATGGCGATGAACGAAGGGGGAGATCGAG
TGGGGGATTCGCGGGGCATTTCCCGTCGACTGAGTCTTGGGCGCAGGGCT
GGGCATGACGAAGATGGCATTGTCAAACGCAGGCGCTTGGTATGAACATA
ATGAGTCGAAAAAGACGAAGTAATTTTTGTAGACGCGTAAGCATGTACTA
AAGCTGTCATTTATCTCAAAAAATTCTTTTGGC
back to top

protein sequence of rna6372

>rna6372-protein ID=rna6372-protein|Name=rna6372|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTN
RLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQ
IIYTRATAAAE
back to top

mRNA from alignment at CM002468.1:372469..373710-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6372 ID=rna6372|Name=rna6372|organism=Nannochloropsis gaditana|type=mRNA|length=1242bp|location=Sequence derived from alignment at CM002468.1:372469..373710- (Nannochloropsis gaditana)
GATCTCCTTGCCTGTGTTATGTCGTGCTCTTTCTCTCTTGAGCTTGTGTG
TGAGTTCAAGCATGAGGCTTCGACCCTGAGGGTCAGATTAGTGGTGGGGA
ATAGACCGGAAGGGTGGAAGGAAAAGAGCGAAGGTGAGAAATGCTTTCCC
ACTCACATAGTCATCTCTCTTTTGTTACACTGCACAAAAATACGCTTTGT
AGGACATCGACATCCTTGTTGGGTTAAGAGGAAAGAGGGACTAAGGAGGG
ACTTCATAGTACCAGAAGCTTCTCAAGATGGTAAGTCATGCACGGGGGGT
CAGAGGACGGAGCGGAGATGTAGGGGAAAGGGTATGGGAAGGAGGGAGGC
CATCGTGAAACTAACCACAGGTCGCTGTGGATACTCTCACGGGATGCCTT
GACGTGTCTTTTTCCTCCCGTCTTACTGAATGCTGACTGCTTTCCTGGGC
CCTTGTGGACTCATCTGTATGCTTCTCCTCCCCAATACGTCTGCTTCTTT
GACAGCCCCCCAAGGTGCAACAAAAGACGAAAGAGCAGAAGCTCGCCGCC
GCCATGGCTGGTGGTAAGAGCAAGAAGAAGGTATGTATGGGAGGAGCTAT
TCCCTCGTGAGGGGAGAGTCGAAGCCCGGAAGAGGACATGTGATCTCACA
CCCACGTGCCCTCTCTCTCTTTGCCCTTTCGGATCTGAGCAGAAGTGGTC
CAAGGGGAAAATGCGTGAGAAGGTGGCGAACAAGGTTCTCTTCGACGAGG
AGATGTACACAAACCGTCTGCTGACCGAGATTCCCAAGTCTAAGCTCATC
ACACCCTCGGCCCTTGTGGAGAGACTTAAAATCAATGGGTCATTGGCCCG
CGCCGCCTTGCGCGAATTGAAAGAGAAGGGACTGATCAAGCCGGTCTCTG
TGCACCACTCCCAGATCATTTACACACGTGCCACTGCCGCCGCCGAGTAA
CGCCAAGCAGAAGGATAGGACGTGTAGATTTTTTAGGGAGTAGGTGAACG
AGTCAGTCGACGCTGGGGTGACAAATCAGGCGAAAGCCTCGGACGGGTAC
TATGAGCATACTATCTTCTACCTTGGCCTCTCGTCCCGGTGCTTGACAAT
GATGGAGAAGAAAGCTAAATATTCAACACCAAAACCATTGTGGGCTGACG
GGATGGATTCTGGCGGTTAACCTGGCGAGTCAGGTTTTTAAAAATGAACA
AGAAGGAAACTCCGTTCAAAGCAGGCAGCAACGTAGTATTGC
back to top

Coding sequence (CDS) from alignment at CM002468.1:372469..373710-

>rna6372 ID=rna6372|Name=rna6372|organism=Nannochloropsis gaditana|type=CDS|length=1008bp|location=Sequence derived from alignment at CM002468.1:372469..373710- (Nannochloropsis gaditana)
AAGTGGTCCAAGGGGAAAATGCGTGAGAAGGTGGCGAACAAGGTTCTCTT
CGACGAGGAGATGTACACAAACCGTCTGCTGACCGAGATTCCCAAGTCTA
AGCTCATCACACCCTCGGCCCTTGTGGAGAGACTTAAAATCAATGGGTCA
TTGGCCCGCGCCGCCTTGCGCGAATTGAAAGAGAAGGGACTGATCAAGCC
GGTCTCTGTGCACCACTCCCAGATCATTTACACACGTGCCACTGCCGCCG
CCGAGTAACCCCCCAAGGTGCAACAAAAGACGAAAGAGCAGAAGCTCGCC
GCCGCCATGGCTGGTGGTAAGAGCAAGAAGAAGATGAAGTGGTCCAAGGG
GAAAATGCGTGAGAAGGTGGCGAACAAGGTTCTCTTCGACGAGGAGATGT
ACACAAACCGTCTGCTGACCGAGATTCCCAAGTCTAAGCTCATCACACCC
TCGGCCCTTGTGGAGAGACTTAAAATCAATGGGTCATTGGCCCGCGCCGC
CTTGCGCGAATTGAAAGAGAAGGGACTGATCAAGCCGGTCTCTGTGCACC
ACTCCCAGATCATTTACACACGTGCCACTGCCGCCGCCGAGTAACCCCCC
AAGGTGCAACAAAAGACGAAAGAGCAGAAGCTCGCCGCCGCCATGGCTGG
TGGTAAGAGCAAGAAGAAGATGAAGTGGTCCAAGGGGAAAATGCGTGAGA
AGGTGGCGAACAAGGTTCTCTTCGACGAGGAGATGTACACAAACCGTCTG
CTGACCGAGATTCCCAAGTCTAAGCTCATCACACCCTCGGCCCTTGTGGA
GAGACTTAAAATCAATGGGTCATTGGCCCGCGCCGCCTTGCGCGAATTGA
AAGAGAAGGGACTGATCAAGCCGGTCTCTGTGCACCACTCCCAGATCATT
TACACACGTGCCACTGCCGCCGCCGAGTAACCCCCCAAGGTGCAACAAAA
GACGAAAGAGCAGAAGCTCGCCGCCGCCATGGCTGGTGGTAAGAGCAAGA
AGAAGATG
back to top
Synonyms
Publications