EWM24294.1, cds6357 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|585105686|gb|EWM24294.1| (ribosomal protein s25 [Nannochloropsis gaditana]) HSP 1 Score: 221.861 bits (564), Expect = 2.570e-73 Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0 Query: 1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE Sbjct: 1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|299117512|emb|CBN75356.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 170.244 bits (430), Expect = 7.110e-53 Identity = 82/111 (73.87%), Postives = 96/111 (86.49%), Query Frame = 0 Query: 1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111 MPPK QQK+KEQK+AAAMAGGK +KKKWSKGK+REKVAN+VLF+E+ YT R L E+PK KLIT S LVERLK+NGSLARAA+REL+EKGLI+ V HH+Q+IYTRAT E Sbjct: 1 MPPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYT-RCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKVDAHHAQVIYTRATNVEE 110
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|302843059|ref|XP_002953072.1| (component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis] >gi|300261783|gb|EFJ45994.1| component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis]) HSP 1 Score: 135.191 bits (339), Expect = 5.124e-39 Identity = 68/109 (62.39%), Postives = 85/109 (77.98%), Query Frame = 0 Query: 1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAA 109 M PK +QK+KE K AA K K+KKWSKGKM+EKV N +LFD+ +Y +LL E+PK K+I+PS L +RL+INGSLARAA+REL KGLIKP+ HHSQ++YTRAT A Sbjct: 1 MAPK-EQKSKEAKALAAANSSKGKRKKWSKGKMKEKVNNAILFDKAVYE-KLLNEVPKYKMISPSVLADRLRINGSLARAAIRELLNKGLIKPIVHHHSQLVYTRATGA 107
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|159472172|ref|XP_001694225.1| (ribosomal protein S25, component of cytosolic 80S ribosome and 40S small subunit [Chlamydomonas reinhardtii] >gi|158276888|gb|EDP02658.1| ribosomal protein S25 [Chlamydomonas reinhardtii]) HSP 1 Score: 134.035 bits (336), Expect = 1.550e-38 Identity = 68/109 (62.39%), Postives = 84/109 (77.06%), Query Frame = 0 Query: 1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAA 109 M PK +QK+KE K AA K K+KKWSKGKM+EKV N VLFD+ +Y +LL E+PK K+I+PS L +RL+I GSLARAA+REL KGLIKP+ HH Q++YTRATAA Sbjct: 1 MAPK-EQKSKEAKALAAANSSKGKRKKWSKGKMKEKVNNAVLFDKAVY-EKLLNEVPKYKMISPSVLADRLRIGGSLARAAIRELSNKGLIKPIVQHHGQMVYTRATAA 107
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|1004147529|gb|KXZ55502.1| (hypothetical protein GPECTOR_2g1051 [Gonium pectorale]) HSP 1 Score: 132.494 bits (332), Expect = 5.706e-38 Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 0 Query: 1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAA 109 M PK +QK+KE K AA K K+KKWSKGKM+EKV N VLFD+ +Y +LL E+PK K+I+PS L +RL+I GSLARAA++EL KGLIKP+ HHSQ++YTRAT+A Sbjct: 1 MAPK-EQKSKEAKALAAANSSKGKRKKWSKGKMKEKVNNAVLFDKAVY-EKLLNEVPKYKMISPSVLADRLRIGGSLARAAIKELVNKGLIKPLVAHHSQLVYTRATSA 107
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|635367373|emb|CCI44446.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 127.872 bits (320), Expect = 4.446e-36 Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 0 Query: 1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGK-MREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111 MPPK QQKTKEQK+AAAMAGG+ K KK +REKVANKVL+D+E Y +RLL+E+PK KLIT SA+VERLK+N +LAR+++R+L+ G I V HH+Q+IYTRA AE Sbjct: 1 MPPKTQQKTKEQKMAAAMAGGRGKGKKKWSKGKVREKVANKVLYDQETY-DRLLSEVPKMKLITASAIVERLKVNATLARSSIRQLESDGTIARVLAHHTQLIYTRAATNAE 111
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|325185071|emb|CCA19564.1| (40S ribosomal protein S25 putative [Albugo laibachii Nc14]) HSP 1 Score: 127.487 bits (319), Expect = 5.534e-36 Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 0 Query: 1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGK-MREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111 MPPK QQKTKEQK+AAAMAGG+ K KK +REKVANKVL+D+E Y +RLL+E+PK KLIT SA+VERLK+N +LAR+++R+L+ G I V HH+Q+IYTRA AE Sbjct: 1 MPPKTQQKTKEQKMAAAMAGGRGKGKKKWSKCKVREKVANKVLYDQETY-DRLLSEVPKMKLITASAIVERLKVNATLARSSIRQLESDGTIARVLAHHTQLIYTRAATNAE 111
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|676388231|ref|XP_009037394.1| (hypothetical protein AURANDRAFT_59049 [Aureococcus anophagefferens] >gi|323452157|gb|EGB08032.1| hypothetical protein AURANDRAFT_59049 [Aureococcus anophagefferens]) HSP 1 Score: 125.561 bits (314), Expect = 2.917e-35 Identity = 84/109 (77.06%), Postives = 97/109 (88.99%), Query Frame = 0 Query: 1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAA 109 MPPKVQQK+KE K+AAAMAGGKSKKKKWSKGK+REK+ANKVLFDE+ Y RLL EIPK KLITPSALVERLK+NG+LARAA++EL+EKGLIK VS HH+Q I+TR + Sbjct: 1 MPPKVQQKSKEAKMAAAMAGGKSKKKKWSKGKVREKMANKVLFDEDTYA-RLLAEIPKMKLITPSALVERLKVNGALARAAIKELQEKGLIKQVSYHHTQWIFTRDVGS 108
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|633913170|gb|KDD76826.1| (ribosomal protein S25 [Helicosporidium sp. ATCC 50920]) HSP 1 Score: 125.176 bits (313), Expect = 9.351e-35 Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 0 Query: 6 QQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAA 110 +QK+KE K AAM+ K K+KKWSKGKM+EKV N+VLFD+ Y +L E+PK K+ITPS L +RL+INGSLARAA+REL E+GLIK VS H Q +YTRAT A Sbjct: 33 EQKSKEAKALAAMSSSKGKRKKWSKGKMKEKVNNQVLFDKATY-EKLNGEVPKYKMITPSILSDRLRINGSLARAAIRELLEQGLIKEVSKTHRQQVYTRATKEA 136
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|698781905|ref|XP_009823996.1| (hypothetical protein H257_02170 [Aphanomyces astaci] >gi|574121720|gb|ETV87197.1| hypothetical protein H257_02170 [Aphanomyces astaci]) HSP 1 Score: 123.635 bits (309), Expect = 1.975e-34 Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 0 Query: 1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGK-MREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRA 106 MPPK QQKTKEQK+AAAMAGG+ K KK +REK ANKVLFD+E Y +R+L E+PK KLIT SA+VERLK+N +LARAA+REL+ KG IK V+ H Q+IYTR+ Sbjct: 1 MPPKTQQKTKEQKMAAAMAGGRGKGKKKWSKGKVREKTANKVLFDQETY-DRMLKEVPKMKLITASAVVERLKVNATLARAAIRELEVKGDIKVVTKHRCQLIYTRS 106 The following BLAST results are available for this feature:
BLAST of EWM24294.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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