EWM24294.1, cds6357 (CDS) Nannochloropsis gaditana

Overview
NameEWM24294.1
Unique Namecds6357
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:373431..373433 -
Alignment locationCM002468.1:373131..373205 -
Alignment locationCM002468.1:372761..373018 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24294.1
Productribosomal protein s25
Orig transcript idgnl|cribi|Naga_100047g14.6057.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:373431..373433 -
CM002468.1supercontigCM002468.1:373131..373205 -
CM002468.1supercontigCM002468.1:372761..373018 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005829cytosol
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR004977Ribosomal_S25
Homology
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|585105686|gb|EWM24294.1| (ribosomal protein s25 [Nannochloropsis gaditana])

HSP 1 Score: 221.861 bits (564), Expect = 2.570e-73
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111
            MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE
Sbjct:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111          
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|299117512|emb|CBN75356.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 170.244 bits (430), Expect = 7.110e-53
Identity = 82/111 (73.87%), Postives = 96/111 (86.49%), Query Frame = 0
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111
            MPPK QQK+KEQK+AAAMAGGK +KKKWSKGK+REKVAN+VLF+E+ YT R L E+PK KLIT S LVERLK+NGSLARAA+REL+EKGLI+ V  HH+Q+IYTRAT   E
Sbjct:    1 MPPKTQQKSKEQKMAAAMAGGKGRKKKWSKGKVREKVANQVLFNEDTYT-RCLAEVPKMKLITASGLVERLKVNGSLARAAIRELEEKGLIRKVDAHHAQVIYTRATNVEE 110          
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|302843059|ref|XP_002953072.1| (component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis] >gi|300261783|gb|EFJ45994.1| component of cytosolic 80S ribosome and 40S small subunit [Volvox carteri f. nagariensis])

HSP 1 Score: 135.191 bits (339), Expect = 5.124e-39
Identity = 68/109 (62.39%), Postives = 85/109 (77.98%), Query Frame = 0
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAA 109
            M PK +QK+KE K  AA    K K+KKWSKGKM+EKV N +LFD+ +Y  +LL E+PK K+I+PS L +RL+INGSLARAA+REL  KGLIKP+  HHSQ++YTRAT A
Sbjct:    1 MAPK-EQKSKEAKALAAANSSKGKRKKWSKGKMKEKVNNAILFDKAVYE-KLLNEVPKYKMISPSVLADRLRINGSLARAAIRELLNKGLIKPIVHHHSQLVYTRATGA 107          
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|159472172|ref|XP_001694225.1| (ribosomal protein S25, component of cytosolic 80S ribosome and 40S small subunit [Chlamydomonas reinhardtii] >gi|158276888|gb|EDP02658.1| ribosomal protein S25 [Chlamydomonas reinhardtii])

HSP 1 Score: 134.035 bits (336), Expect = 1.550e-38
Identity = 68/109 (62.39%), Postives = 84/109 (77.06%), Query Frame = 0
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAA 109
            M PK +QK+KE K  AA    K K+KKWSKGKM+EKV N VLFD+ +Y  +LL E+PK K+I+PS L +RL+I GSLARAA+REL  KGLIKP+  HH Q++YTRATAA
Sbjct:    1 MAPK-EQKSKEAKALAAANSSKGKRKKWSKGKMKEKVNNAVLFDKAVY-EKLLNEVPKYKMISPSVLADRLRIGGSLARAAIRELSNKGLIKPIVQHHGQMVYTRATAA 107          
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|1004147529|gb|KXZ55502.1| (hypothetical protein GPECTOR_2g1051 [Gonium pectorale])

HSP 1 Score: 132.494 bits (332), Expect = 5.706e-38
Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 0
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAA 109
            M PK +QK+KE K  AA    K K+KKWSKGKM+EKV N VLFD+ +Y  +LL E+PK K+I+PS L +RL+I GSLARAA++EL  KGLIKP+  HHSQ++YTRAT+A
Sbjct:    1 MAPK-EQKSKEAKALAAANSSKGKRKKWSKGKMKEKVNNAVLFDKAVY-EKLLNEVPKYKMISPSVLADRLRIGGSLARAAIKELVNKGLIKPLVAHHSQLVYTRATSA 107          
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|635367373|emb|CCI44446.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 127.872 bits (320), Expect = 4.446e-36
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 0
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGK-MREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111
            MPPK QQKTKEQK+AAAMAGG+ K KK      +REKVANKVL+D+E Y +RLL+E+PK KLIT SA+VERLK+N +LAR+++R+L+  G I  V  HH+Q+IYTRA   AE
Sbjct:    1 MPPKTQQKTKEQKMAAAMAGGRGKGKKKWSKGKVREKVANKVLYDQETY-DRLLSEVPKMKLITASAIVERLKVNATLARSSIRQLESDGTIARVLAHHTQLIYTRAATNAE 111          
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|325185071|emb|CCA19564.1| (40S ribosomal protein S25 putative [Albugo laibachii Nc14])

HSP 1 Score: 127.487 bits (319), Expect = 5.534e-36
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 0
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGK-MREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAAE 111
            MPPK QQKTKEQK+AAAMAGG+ K KK      +REKVANKVL+D+E Y +RLL+E+PK KLIT SA+VERLK+N +LAR+++R+L+  G I  V  HH+Q+IYTRA   AE
Sbjct:    1 MPPKTQQKTKEQKMAAAMAGGRGKGKKKWSKCKVREKVANKVLYDQETY-DRLLSEVPKMKLITASAIVERLKVNATLARSSIRQLESDGTIARVLAHHTQLIYTRAATNAE 111          
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|676388231|ref|XP_009037394.1| (hypothetical protein AURANDRAFT_59049 [Aureococcus anophagefferens] >gi|323452157|gb|EGB08032.1| hypothetical protein AURANDRAFT_59049 [Aureococcus anophagefferens])

HSP 1 Score: 125.561 bits (314), Expect = 2.917e-35
Identity = 84/109 (77.06%), Postives = 97/109 (88.99%), Query Frame = 0
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAA 109
            MPPKVQQK+KE K+AAAMAGGKSKKKKWSKGK+REK+ANKVLFDE+ Y  RLL EIPK KLITPSALVERLK+NG+LARAA++EL+EKGLIK VS HH+Q I+TR   +
Sbjct:    1 MPPKVQQKSKEAKMAAAMAGGKSKKKKWSKGKVREKMANKVLFDEDTYA-RLLAEIPKMKLITPSALVERLKVNGALARAAIKELQEKGLIKQVSYHHTQWIFTRDVGS 108          
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|633913170|gb|KDD76826.1| (ribosomal protein S25 [Helicosporidium sp. ATCC 50920])

HSP 1 Score: 125.176 bits (313), Expect = 9.351e-35
Identity = 66/105 (62.86%), Postives = 81/105 (77.14%), Query Frame = 0
Query:    6 QQKTKEQKLAAAMAGGKSKKKKWSKGKMREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRATAAA 110
            +QK+KE K  AAM+  K K+KKWSKGKM+EKV N+VLFD+  Y  +L  E+PK K+ITPS L +RL+INGSLARAA+REL E+GLIK VS  H Q +YTRAT  A
Sbjct:   33 EQKSKEAKALAAMSSSKGKRKKWSKGKMKEKVNNQVLFDKATY-EKLNGEVPKYKMITPSILSDRLRINGSLARAAIRELLEQGLIKEVSKTHRQQVYTRATKEA 136          
BLAST of EWM24294.1 vs. NCBI_GenBank
Match: gi|698781905|ref|XP_009823996.1| (hypothetical protein H257_02170 [Aphanomyces astaci] >gi|574121720|gb|ETV87197.1| hypothetical protein H257_02170 [Aphanomyces astaci])

HSP 1 Score: 123.635 bits (309), Expect = 1.975e-34
Identity = 70/107 (65.42%), Postives = 85/107 (79.44%), Query Frame = 0
Query:    1 MPPKVQQKTKEQKLAAAMAGGKSKKKKWSKGK-MREKVANKVLFDEEMYTNRLLTEIPKSKLITPSALVERLKINGSLARAALRELKEKGLIKPVSVHHSQIIYTRA 106
            MPPK QQKTKEQK+AAAMAGG+ K KK      +REK ANKVLFD+E Y +R+L E+PK KLIT SA+VERLK+N +LARAA+REL+ KG IK V+ H  Q+IYTR+
Sbjct:    1 MPPKTQQKTKEQKMAAAMAGGRGKGKKKWSKGKVREKTANKVLFDQETY-DRMLKEVPKMKLITASAVVERLKVNATLARAAIRELEVKGDIKVVTKHRCQLIYTRS 106          
The following BLAST results are available for this feature:
BLAST of EWM24294.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105686|gb|EWM24294.1|2.570e-73100.00ribosomal protein s25 [Nannochloropsis gaditana][more]
gi|299117512|emb|CBN75356.1|7.110e-5373.87conserved unknown protein [Ectocarpus siliculosus][more]
gi|302843059|ref|XP_002953072.1|5.124e-3962.39component of cytosolic 80S ribosome and 40S small ... [more]
gi|159472172|ref|XP_001694225.1|1.550e-3862.39ribosomal protein S25, component of cytosolic 80S ... [more]
gi|1004147529|gb|KXZ55502.1|5.706e-3861.47hypothetical protein GPECTOR_2g1051 [Gonium pector... [more]
gi|635367373|emb|CCI44446.1|4.446e-3662.50unnamed protein product [Albugo candida][more]
gi|325185071|emb|CCA19564.1|5.534e-3662.5040S ribosomal protein S25 putative [Albugo laibach... [more]
gi|676388231|ref|XP_009037394.1|2.917e-3577.06hypothetical protein AURANDRAFT_59049 [Aureococcus... [more]
gi|633913170|gb|KDD76826.1|9.351e-3562.86ribosomal protein S25 [Helicosporidium sp. ATCC 50... [more]
gi|698781905|ref|XP_009823996.1|1.975e-3465.42hypothetical protein H257_02170 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6372rna6372Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications