rna6367, rna6367 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6367
Unique Name	rna6367
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3290
Alignment location	CM002468.1:359253..360368 +

Link to JBrowse

Properties


Property Name	Value
Product	ribosomal rna assembly protein mis3
Orig transcript id	gnl\|cribi\|Naga_100047g9.6085.mrna
Orig protein id	gnl\|cribi\|Naga_100047g9.6085
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:359253..360368 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100047g9	gene6151	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6367	rna6367-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24322.1	cds6352	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:359253..360368+
coding sequence from alignment at CM002468.1:359253..360368+

mRNA sequence

>rna6367 ID=rna6367|Name=rna6367|organism=Nannochloropsis gaditana|type=mRNA|length=3290bp
CGCAAAAAGCGTTTCCCCAAGCTGTTCTCACTGCATTTGTGTCGCACGCC
TAAGAATATCTATGCGTTGTACTATAAACAGATATCTTTTAACACACACA
CAGTCTTACGTCAAAGCGCCTGTGAGGTGGACGTTTTGAGCGGGTACTCG
AGCTCATCGACCTGGCGCTTCCGACGCGAGTCGCTCACGCCATCGACCAC
CTCAAGCAACACGACTGTCTTCAACCAAGCCAAATAAGGTCTTTTATATA
TGATTTATTGGGCCTTTTCACCTCCGTTCCACTCGTAGAACCATAACACA
TACACAACCATGCGACCCGAAAGGTTGGCCTTGTCCCTCATTTTCTTGGT
GTGGAGCGTCGCAAACGTAAGCCATGCGTTCATGGCCCCTTTAGCGGTGC
GCCTGAGGCAACCTCTACATGTGGAGCACCTGCTCCCAGCCCGTCACCCT
GAGCCTCCGGGAGGCCGTCTCGATACTGCCCGCCCCCACGAGGTGCCCTC
GGGGAGCCCCTCCCGTCACTGCAACGCTGGCAAAGACAGCAGCCATGACT
ACGGGACGGCTACCCTTTCGGAGGGTCGGCACCCGGAGCTTATCGATACT
CACTGGACACAAGGCAATCCTATCCAATTGCTTCGACAAGGCCATATTCC
CCCCTTCACCTGGACCCCCCCCCTTTTCTCTCCAAGCAACGCCACCGCCA
AGAAGACGCAGGACGACAAAAGCGGCAAATCCTTTGTCGATACTGCTGCT
TTAGAGAGGGCGATCGCCTCACCGGGCCTCAGGTCGGTGCCGGGCATGTG
GACCGTCCTCGCCGAGCACTGCGGAGCCTGGAACATGCTCACGGACCCCT
CCCATTCCGTCCCACCTCCTTCCCTTGCGGCGTCCTCCTCCTCTACGCCT
TTGTCCCTCACCTTTGCCCAAGCCCATGACGTCATCCGCCTGGCTGCCGC
CGGCCTCCACGCTCTGAATCTGCGTCAGGGTGACCACATCGCCTTCTTCT
CCGAGAACAGCGCCCGCTGGCTCTTGGCCGAGCAAGGCGCCTCCCTTAAC
GGCTGCCCGACAGCGGTACGCGGGGCCTCCGCCTCTGTGGAGGAGCTTCA
GTACATCTACCGCACGGCCGACTGCAAGGCGGTGGTGCTGCAAGACCTTA
GCCTCCTTCGCAAGCTCAGGGAGGCCGGGGGGCTCTCCTCCAAGCACGGC
CCGCCGCGCCTGGTCATCGTCCTCCGCCCTCCTGAGGGCATGAGAGAAAG
ACAAGGAGTGGGTTCCGGCGGCGGGGAGGGGGAGACGGAGGGCGGTCTGG
GGCCTCTCTCGGTCGCCACCCTCTCTGAGGAGCCGGATTGCGGTCCCACG
GTCAGCCTAGAGGAGCTTCTGGCCCTGGGCGCACGGCATTTGCCCCACTA
CCTCCCCCCCGACCTCCGCCCCTCAGACCTCCACACACTCGTCTTCACCA
GCGGCACCACCGGCAGGCCCAAGGGCGTCATGCTCTCCCACGCCAACCTC
CTCCACCAGGTCCGGCACATCGACCTCGGGCGCAACCCTCTCCCCGGTGA
CGTCGTCCTTTCCCTCCTACCCTGCTGGCACATCTTTGAACGCTCTTCAG
AGCTCTTCGCCCTGGCCCGCGGGGCTTCTCTGGTCTACTCCTCCGTCCGC
GCTTTCAAAGCCGACCTCCAGCGATACCGGCCGCACTACCTGATCGTCGT
CCCCCGCCTCCTGGAGAACGTGCACAGGTCCATCAAAGACAAGCTTTCCG
CCGGTTCCCCCGTCCGCCGACGCCTTGTCGCCACCCTTTCCCTCCTCTCC
CTCCTCTACACACGCGCTCTCAAACAGGCCTTGGGCCTGGTCGTCCGCCG
TCCGGCCTCCCACCCGCCCACCGGGTCCCGGCGGCATCTCTTTCTCGCCT
CGTTCGTCTCCACACTTAGACGCCTCGCGTACAGGCCCGCGGCCGCCCTG
GCCACGTGCTTTCTCCTCCCTGGCGCCCTCCTCGCAGATTTGTTGGTCTG
GAAAAAAGTGCGGCAGGCCCTTGGGGGGCGTCAGAAGCTGGTGGTGTCCG
GCGGCTCGGCACTGGCACGCTACCTAGAGGAGTTCTACGACGCCGCGGGC
ATCCCCGTGGTCTCAGGGTACGGTTTGACGGAGACCAGCCCGGTGATTGC
CGTGCGACGGGCGGGGCGGCTGCGAAACCTGGTAGACGGGGGGGTGGTGG
GTTTCCCGCCCAAGGAGGTGGAGCTGGAGATCCGGGCATTGGAGGATGAG
AGGGAGGGGGCTCCAGAGAAGAGAAGACAGGAGAGGACGCGGAAGGAGGT
GGGTAGCGCGGAAGGAAAAGTGGGGATAGTGTTCACGCGGGGCCCTCAGG
TGATGCAGGGCTACTACAAGGACCCAAGCAGCACGCGCAAGGCGGTAGGC
GATGACGGCTGGCTTAACACGGGCGACCTAGGGTACCTGAATCCTGGAAC
AGGGGACCTGGTCCTGACCGGGCGCGCCAAGGATCTGATTGTGCTGAGCA
ACGGTGAAAACGTGGAGCCGCAACCCATCGAAGACGCCGTGGTGGAGCGT
TGTGCCACGGTCGAGCAATGCTTGGTCCTCGGTCACGACAAGCGGCAGCT
CAGCGCACTGGTGGTTGTGAGCCCTCAGGGGCTGGCCGCGCGCGGCTTGT
TGCCGCCTGTGGAAGCAGAGCGACTGGATGCATTGGTGGGGCCTTCGGCC
GTGCTTTTAGGGTGCCAAGGGGACAAGACCGCGCTGGACATGGAGGCCGA
CAGGCTGAACGCGGACGAGTCGCTCGTGAGGGCGGTACAGAAAGAAATCG
CCGCCGCCTTGACGCAAGACCCAGAGGAGTTTCGTGCATGGGAGCAGATT
AAAAACCTGCATTTGTTGCTGGCCCCGTTCAACGTGCAGTCGGGCTTACT
AACCCAGACCTTAAAGGTGAAGAGGGTGACTGTGCAAGATTACTATAAGG
AGGCCATCGACAGGCTGTACGCGCAGTAGCTGGAAAGCCCAACGCTGGCA
TTATATAAGAGACGATGTTGATAAAACCAATTGCATATAGTGTAAGCGGG
AACGAAAGAATGATGAAGAATCTCATTTAAGGACAGATGAAACCATTTTA
AAGGCGCGCATGGCACGCGACGGATTGGCGTGGAACTTGATGCAACGAAG
ATCGCGTGATCGTTTACAGGTTCCAAAACACGCATTATGTGAGATCCATT
CATAACCCACCGATCGTCTTGTAAGATACTCGTTCGAAATGTGAAAAGAA
TCGTCTATCACGAAAGGAGAAGGAACGCGAAGTCTACATC

protein sequence of rna6367

>rna6367-protein ID=rna6367-protein|Name=rna6367|organism=Nannochloropsis gaditana|type=polypeptide|length=371bp
MPGPLLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSM
TVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGG
IVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGI
KLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKK
NVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQ
EKQAQATERAATKREEREKEFVAPAEENGGREGPKLGGIDRKRLKKGVSI
NKNDDKEQENEKKAKKRSLKEMTDGFIQKSKSKMGNALSANQHQGEYVEE
SMMKLASTEISKKDKKKKLKK

mRNA from alignment at CM002468.1:359253..360368+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6367 ID=rna6367|Name=rna6367|organism=Nannochloropsis gaditana|type=mRNA|length=1116bp|location=Sequence derived from alignment at CM002468.1:359253..360368+ (Nannochloropsis gaditana)
ATGCCAGGGCCTTTGCTGGAAGAAAGCTCGTTCGCCACGCTCTTCCCCAA
ATACCGGGAGAAGTATCTGCGGGAGGTGTGGCCGGTCGTGACACGGGcct
tggagaaggtgggCGTGGCCTGCGAGCTGAATATCATTGAGGGGTCCATG
ACCGTGCGGACGACACGCAAGACGAGCGATCCGTACGTGGTAGTAAAAGC
GAGGGACCTGATCAAGCTGTTGGCGCGCTCCATCCCCGTGCAACAGGCCG
TCAAGGTATTGGAGGATGAGGTCGCCTGCGACATTATCAAGATCGGCGGC
ATCGTCCGGAACAAGGAGAGGTTTGTCAAACGCCGGCAGAGACTGGTGGG
CCCGGATGGCGCGACCCTCAAGGCGCTGGAGCTTCTGACCGGCTGCTTTA
TCTTGGTGCAGGGGAACACCGTGGCTGCGATGGGCCCTTACAAAGGGATC
AAGCTCGTCCGCAACGTGGTCGTGGACTGCATGAAGAATATCCACCCCAT
ATATCATATCAAGACCCTTATGATCAAAAGGGAATTGGCCAAGGATCCCA
CATTGGCCCAGGAGAACTGGGACCGTTTCCTTCCGCAgttcaagaagaag
aacgtGCCTAGACACAAGCCACAGGTAGTACGACCCAAAAAGGCATacac
gcccttccctccgccccaacaACCCTCCAAGATCGATTTACAGCTCGAAT
CTGGCGAGTATTTTCTGACAGAGCAACAGCGAAAattgaagaagaagcag
gagaaaCAGGCACAGGCAACGGAGAGGGCGGCGACtaagcgggaggagcg
ggagaaggagtttGTCGCGCCTGCTGAGGAGAacgggggcagggaaggcc
cCAAGCTTGGTGGAATAGACAGGAAACGTTTAAAAAAGGGAGTTTCAATA
AACAAAAACGATGACAAAGAACAGGAAAACGAGAAAAAAGCGAAGAAACG
TAGTCTTAAAGAGATGACCGACGGGTTTATTCAGAAGAGCAAAAGTAAGA
TGGGTAATGCGCTTTCGGCAAATCAGCACCAGGGGGAATATGTCGAGGAA
TCTATGATGAAGCTTGCCTCGACAGAGATAAgcaagaaggacaagaagaa
gaagctaAAAAAATAG

Coding sequence (CDS) from alignment at CM002468.1:359253..360368+

>rna6367 ID=rna6367|Name=rna6367|organism=Nannochloropsis gaditana|type=CDS|length=1116bp|location=Sequence derived from alignment at CM002468.1:359253..360368+ (Nannochloropsis gaditana)
ATGCCAGGGCCTTTGCTGGAAGAAAGCTCGTTCGCCACGCTCTTCCCCAA
ATACCGGGAGAAGTATCTGCGGGAGGTGTGGCCGGTCGTGACACGGGcct
tggagaaggtgggCGTGGCCTGCGAGCTGAATATCATTGAGGGGTCCATG
ACCGTGCGGACGACACGCAAGACGAGCGATCCGTACGTGGTAGTAAAAGC
GAGGGACCTGATCAAGCTGTTGGCGCGCTCCATCCCCGTGCAACAGGCCG
TCAAGGTATTGGAGGATGAGGTCGCCTGCGACATTATCAAGATCGGCGGC
ATCGTCCGGAACAAGGAGAGGTTTGTCAAACGCCGGCAGAGACTGGTGGG
CCCGGATGGCGCGACCCTCAAGGCGCTGGAGCTTCTGACCGGCTGCTTTA
TCTTGGTGCAGGGGAACACCGTGGCTGCGATGGGCCCTTACAAAGGGATC
AAGCTCGTCCGCAACGTGGTCGTGGACTGCATGAAGAATATCCACCCCAT
ATATCATATCAAGACCCTTATGATCAAAAGGGAATTGGCCAAGGATCCCA
CATTGGCCCAGGAGAACTGGGACCGTTTCCTTCCGCAgttcaagaagaag
aacgtGCCTAGACACAAGCCACAGGTAGTACGACCCAAAAAGGCATacac
gcccttccctccgccccaacaACCCTCCAAGATCGATTTACAGCTCGAAT
CTGGCGAGTATTTTCTGACAGAGCAACAGCGAAAattgaagaagaagcag
gagaaaCAGGCACAGGCAACGGAGAGGGCGGCGACtaagcgggaggagcg
ggagaaggagtttGTCGCGCCTGCTGAGGAGAacgggggcagggaaggcc
cCAAGCTTGGTGGAATAGACAGGAAACGTTTAAAAAAGGGAGTTTCAATA
AACAAAAACGATGACAAAGAACAGGAAAACGAGAAAAAAGCGAAGAAACG
TAGTCTTAAAGAGATGACCGACGGGTTTATTCAGAAGAGCAAAAGTAAGA
TGGGTAATGCGCTTTCGGCAAATCAGCACCAGGGGGAATATGTCGAGGAA
TCTATGATGAAGCTTGCCTCGACAGAGATAAgcaagaaggacaagaagaa
gaagctaAAAAAATAG

Synonyms

Publications