EWM24322.1, cds6352 (CDS) Nannochloropsis gaditana

Overview
NameEWM24322.1
Unique Namecds6352
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:359253..360368 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24322.1
Productribosomal rna assembly protein mis3
Orig transcript idgnl|cribi|Naga_100047g9.6085.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:359253..360368 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR004088KH_dom_type_1
IPR024166rRNA_assembly_KRR1
IPR004087KH_dom
Homology
BLAST of EWM24322.1 vs. NCBI_GenBank
Match: gi|585105714|gb|EWM24322.1| (ribosomal rna assembly protein mis3 [Nannochloropsis gaditana])

HSP 1 Score: 756.133 bits (1951), Expect = 0.000e+0
Identity = 371/371 (100.00%), Postives = 371/371 (100.00%), Query Frame = 0
Query:    1 MPGPLLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEFVAPAEENGGREGPKLGGIDRKRLKKGVSINKNDDKEQENEKKAKKRSLKEMTDGFIQKSKSKMGNALSANQHQGEYVEESMMKLASTEISKKDKKKKLKK 371
            MPGPLLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEFVAPAEENGGREGPKLGGIDRKRLKKGVSINKNDDKEQENEKKAKKRSLKEMTDGFIQKSKSKMGNALSANQHQGEYVEESMMKLASTEISKKDKKKKLKK
Sbjct:    1 MPGPLLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEFVAPAEENGGREGPKLGGIDRKRLKKGVSINKNDDKEQENEKKAKKRSLKEMTDGFIQKSKSKMGNALSANQHQGEYVEESMMKLASTEISKKDKKKKLKK 371          
BLAST of EWM24322.1 vs. NCBI_GenBank
Match: gi|1173955835|gb|OQS02745.1| (ribosomal RNA assembly protein mis3 [Thraustotheca clavata])

HSP 1 Score: 442.195 bits (1136), Expect = 5.152e-152
Identity = 216/336 (64.29%), Postives = 255/336 (75.89%), Query Frame = 0
Query:    2 PGPLLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEFVAPAE------ENGGREGPKLGGIDRKRLKKGVSINKNDDKEQENEKKAKKRSLKEMTDGFIQKSK 331
            P  +LEESSFATLFPKYREKYLREVWP+VT+AL+   + CELN+IEGSMTVRTTRKTSDPY+++KARDLIKLLARSIPV QAVK+L+DEV CDIIKIGG+VRNKERFVKRRQRLVGPDGATLKA+ELLT C++LVQGNTV+AMGPY G++ +R +V DC  NIHPIY+IKTLMIKRELAKDP L  ENWDRFLP FKKKNV   KP VVR KK YTPFPP Q PSKID ++ESGEYF+   +RK  KK EKQA   E    ++ E+   FVAP+E      E+    GP +  +  K L +G +           EKK+K  S+ +  DG + K+K
Sbjct:   40 PTGMLEESSFATLFPKYREKYLREVWPIVTKALDAYKIVCELNLIEGSMTVRTTRKTSDPYIILKARDLIKLLARSIPVNQAVKILDDEVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYSGLRHIRKIVEDCFHNIHPIYNIKTLMIKRELAKDPALQGENWDRFLPVFKKKNVQTKKPHVVREKKEYTPFPPAQMPSKIDKEIESGEYFMKAHERKAMKKAEKQAINLEAKEKRKAEKAATFVAPSEKKRKRQEDTAANGPSVDELKAKFLAQGSAT---------KEKKSKASSVSDFVDGPVAKAK 366          
BLAST of EWM24322.1 vs. NCBI_GenBank
Match: gi|673044703|ref|XP_008876312.1| (hypothetical protein H310_11407 [Aphanomyces invadans] >gi|574468119|gb|ETV95139.1| hypothetical protein H310_11407 [Aphanomyces invadans])

HSP 1 Score: 429.869 bits (1104), Expect = 2.067e-147
Identity = 205/278 (73.74%), Postives = 237/278 (85.25%), Query Frame = 0
Query:    5 LLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKRE-EREKEFVAPAEENGGR 281
            +LEESSFATLFPKYREKYLREVWP+VT+AL+ V +ACELN+IEGSMTVRTTRKT+DPY+V+KARDLIKLLARSIPV QAVK+L+DEV CDIIKIGG+VRNKERFVKRRQRLVGPDGATLKA+ELLT C++LVQGNTV+AMGPY G++ VR +V DC +N+HPIY+IKTLMIKREL+KDP LA ENWDRFLP FKKKNV   KP VVR KKAYTPFPP   PSKID ++ESGEYF+ E +RK   KQ K+AQA      +R+ E+   FVAPAE+   R
Sbjct:   40 MLEESSFATLFPKYREKYLREVWPIVTKALDSVKIACELNLIEGSMTVRTTRKTTDPYIVLKARDLIKLLARSIPVNQAVKILDDEVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYGGLRHVRKIVEDCFQNVHPIYNIKTLMIKRELSKDPKLAGENWDRFLPVFKKKNVQTKKPHVVREKKAYTPFPPAPTPSKIDKEIESGEYFMKEHERKA-MKQAKKAQANMEVREQRKAEKAAAFVAPAEKKRKR 316          
BLAST of EWM24322.1 vs. NCBI_GenBank
Match: gi|223998947|ref|XP_002289146.1| (hypothetical protein THAPSDRAFT_268598 [Thalassiosira pseudonana CCMP1335] >gi|220974354|gb|EED92683.1| hypothetical protein THAPSDRAFT_268598 [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 429.483 bits (1103), Expect = 1.842e-146
Identity = 213/320 (66.56%), Postives = 256/320 (80.00%), Query Frame = 0
Query:    3 GPLLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEFVAPA--EENGGREGPKLGGI---DRKRLKKGVSINKNDDKEQENEKKAKKR 317
            G LLEESSFATLFPKYREKYLREVWP+VT++L+K  VACELN++EGSMTVRTT+KTSDPY+++KARDLIKLLARSIP  QA+K+L D+  C+IIKIGG+VRNKERFVKRRQRL+GPDGATLKALELLT C+ILVQGNTV+ MG YKGIK  RNV++DCM NIHP+Y+IK LMI REL +DP L +E+W+RFLP FKKKNV R KP  ++ KK+YTPFPP QQPSKIDLQLESGEYFL+E++RK KK  EK+  + E+   KR  RE EFV P+  EE     G   G +   +RK  + GV  +  DD ++  +K AKKR
Sbjct:   58 GRLLEESSFATLFPKYREKYLREVWPLVTKSLDKYKVACELNLVEGSMTVRTTKKTSDPYIILKARDLIKLLARSIPAPQALKILNDDHHCEIIKIGGLVRNKERFVKRRQRLIGPDGATLKALELLTQCYILVQGNTVSVMGTYKGIKQTRNVILDCMNNIHPVYNIKRLMIMRELERDPKLKEESWERFLPTFKKKNVKRRKPHQLKKKKSYTPFPPAQQPSKIDLQLESGEYFLSERERKAKKLGEKKIASMEKTEEKRRARELEFVHPSKFEEASVGGGTAAGAVVEANRKGSESGV--DAKDDVDRLAKKFAKKR 375          
BLAST of EWM24322.1 vs. NCBI_GenBank
Match: gi|528894902|gb|EPZ35062.1| (KRR1 small subunit processome component-like protein [Rozella allomycis CSF55])

HSP 1 Score: 423.32 bits (1087), Expect = 9.943e-145
Identity = 197/294 (67.01%), Postives = 240/294 (81.63%), Query Frame = 0
Query:    1 MPGPLLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEFVAPAEENGGREGPKLGGIDRKRL 294
            M GPLLEESSFATLFPKYRE YLRE+WP VT AL+K G+AC L++IEGSMTV+TTRKT DPY++VKARDLIKLLARS+P QQAVK+LED +ACDIIKIG +VRNKERFVKRRQRL+GP+G TLKA+ELLT C++LVQGNTV+AMG +KG+K VR +V+DCMKNIHP+YHIK LMIK+EL+KD  L  ENWDRFLPQFKK+NV R  P+VV+ KK YTPFPPPQQP K+D  +ESGEYFL  ++RK K+  +K+ +  + +  KR+EREK F+ P E+   +  P    I  + L
Sbjct:   44 MAGPLLEESSFATLFPKYRENYLREIWPTVTAALQKHGIACVLDLIEGSMTVKTTRKTFDPYIIVKARDLIKLLARSVPFQQAVKILEDGMACDIIKIGTLVRNKERFVKRRQRLIGPNGNTLKAIELLTKCYVLVQGNTVSAMGDFKGLKDVRRIVLDCMKNIHPVYHIKELMIKKELSKDEKLKHENWDRFLPQFKKRNVQRKAPKVVKEKKEYTPFPPPQQPRKVDEMIESGEYFLKPKERKQKELDKKKEEQIKNSEVKRQEREKAFIPPVEQTSQKRKPDDAQISTQDL 337          
BLAST of EWM24322.1 vs. NCBI_GenBank
Match: gi|760441851|ref|XP_011397994.1| (KRR1 small subunit processome component-like protein [Auxenochlorella protothecoides] >gi|675352666|gb|KFM25106.1| KRR1 small subunit processome component-like protein [Auxenochlorella protothecoides])

HSP 1 Score: 419.083 bits (1076), Expect = 2.404e-143
Identity = 199/280 (71.07%), Postives = 233/280 (83.21%), Query Frame = 0
Query:    2 PGPLLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEFVAPAEENGGR 281
            P  LLEES+FATLFPKYREKYLREVW  VTRAL++ GVACELN++EGSM+VRTT KT DPY+++KARD+IKLLARS+P  QA+KVLED++ CDIIKIGG++RNKE+F KRRQRL+GP+GATLKALELLTGCFILVQGNTVAAMG +KG+K VR VV DC+KNIHPIYHIKTLMIKRELAKDPTLA ENWDRFLP FKKKNV R +  V++PK  YTPFPP Q  SK+D  LESGEYFLT+ Q+  + +  K A    +   ++ +RE EFVAP EE G R
Sbjct:   51 PSGLLEESAFATLFPKYREKYLREVWSAVTRALKEHGVACELNLVEGSMSVRTTLKTYDPYIILKARDVIKLLARSVPAPQALKVLEDDMQCDIIKIGGLIRNKEKFTKRRQRLIGPNGATLKALELLTGCFILVQGNTVAAMGGWKGLKQVRRVVEDCIKNIHPIYHIKTLMIKRELAKDPTLATENWDRFLPNFKKKNVKR-RAAVIKPKAPYTPFPPAQPLSKVDRMLESGEYFLTKDQQAARARMAKSAAQASKTDERKRKREAEFVAPKEEAGAR 329          
BLAST of EWM24322.1 vs. NCBI_GenBank
Match: gi|298708603|emb|CBJ26090.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 421.009 bits (1081), Expect = 3.190e-143
Identity = 202/267 (75.66%), Postives = 236/267 (88.39%), Query Frame = 0
Query:    5 LLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEF 271
            LLEESSFATLFPKYREKYLREVWP+VT+AL+K GV+CEL++IEGSMTVRTTRKT DPYV+VKARDLIKLLARSIP QQA++VLED+V CDIIKIGG+VRNKERFVKRR RLVGPDG+TLKALELLTGC++LVQGNTV+AMG Y+G+K VR VV DCM N+HP+Y+IKTLMI+RELAKDP L  ENW+RFLPQF KKNV R KP V+R KK YTPFPP Q P K+D QLESGE+FL E+QRK KK+ EK+A++ E +A KR+ RE++ 
Sbjct:   32 LLEESSFATLFPKYREKYLREVWPIVTKALQKRGVSCELDLIEGSMTVRTTRKTRDPYVIVKARDLIKLLARSIPAQQALRVLEDDVNCDIIKIGGMVRNKERFVKRRARLVGPDGSTLKALELLTGCYVLVQGNTVSAMGSYQGLKQVRKVVTDCMNNVHPVYNIKTLMIRRELAKDPNLKDENWERFLPQFHKKNVKRKKPAVIREKKVYTPFPPAQTPRKVDEQLESGEFFLNERQRKAKKRAEKKAKSAELSAAKRKNREQDL 298          
BLAST of EWM24322.1 vs. NCBI_GenBank
Match: gi|698808788|ref|XP_009837423.1| (hypothetical protein H257_12020 [Aphanomyces astaci] >gi|574107707|gb|ETV73218.1| hypothetical protein H257_12020 [Aphanomyces astaci])

HSP 1 Score: 419.083 bits (1076), Expect = 4.855e-143
Identity = 197/272 (72.43%), Postives = 229/272 (84.19%), Query Frame = 0
Query:    5 LLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEFVAPAE 276
            +LEESSFATLFPKYREKYLREVWP+VT+AL+ V + CELN+IEGSMTVRTTRKT+DPYVV+KARDLIKLLARSIPV QA+KVL+DEV CDIIKIGG+VRNKERFVKRRQRLVGPDGATLKA+ELLT C++LVQGNTV+AMGPY G++ VR +V DC  N+HPIY+IKTLMIKREL+KDP L+ ENWDRFLP FKKKNV   KP VVR K+ YTPFPP   PSKID ++ESGEYF+ E +R+  K+ +K     E    K+ E+   FVAPAE
Sbjct:   47 MLEESSFATLFPKYREKYLREVWPIVTKALDGVKLVCELNLIEGSMTVRTTRKTTDPYVVLKARDLIKLLARSIPVNQAIKVLDDEVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYAGLRHVRKIVEDCFHNVHPIYNIKTLMIKRELSKDPKLSGENWDRFLPVFKKKNVQTKKPHVVREKRVYTPFPPAPTPSKIDKEIESGEYFMKEHERQAIKQAKKTQANLEVREQKKAEKASAFVAPAE 318          
BLAST of EWM24322.1 vs. NCBI_GenBank
Match: gi|669139320|ref|XP_008605228.1| (ribosomal RNA assembly protein [Saprolegnia diclina VS20] >gi|530743272|gb|EQC41514.1| ribosomal RNA assembly protein [Saprolegnia diclina VS20])

HSP 1 Score: 417.927 bits (1073), Expect = 1.912e-142
Identity = 209/341 (61.29%), Postives = 255/341 (74.78%), Query Frame = 0
Query:    2 PGPLLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEFVAPAE----------ENGGREGPKLGGIDRKRLKKGVSINKNDDKEQENEKKAK-KRSLKEMTDGFIQKSK 331
            P  +LEESSFATLFPKYREKYLREVWP+VT+AL+   + CELN+IEGSMTVRTT+KTSDPY+V+K+RDLIKLLARSIPV QA+K+LEDEV CDIIKIGG+VRNKERFVKRRQRLVGPDGATLKA+ELLT C++LVQGNTV+AMGPY G++ VR +V DC  N+HPIY+IKTLMIKREL+KDP L  ENWDRFLP FKKKNV   KP  VR K+ YTPFPP Q PSK+D ++ESGEYF+ E +RK  KK  KQA   E    ++ E+   FVAP+E          E+    GP +  +  K L +G +++        ++KK K   S+ +   G + K+K
Sbjct:   35 PTGMLEESSFATLFPKYREKYLREVWPIVTKALDAFKIVCELNLIEGSMTVRTTKKTSDPYIVLKSRDLIKLLARSIPVNQAIKILEDEVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYSGLRHVRKIVEDCFHNVHPIYNIKTLMIKRELSKDPALQGENWDRFLPVFKKKNVQTKKPHTVREKREYTPFPPAQMPSKVDKEIESGEYFMKEHERKAMKKAAKQAVNLEAKEVRKAEKAATFVAPSEKETQKKRKRQEDTAATGPSVHELKAKFLAQGSTLS--------DKKKTKPTSSVNDFVAGSVSKAK 367          
BLAST of EWM24322.1 vs. NCBI_GenBank
Match: gi|813108494|ref|XP_012194417.1| (hypothetical protein SPRG_00811 [Saprolegnia parasitica CBS 223.65] >gi|641540987|gb|KDO34750.1| hypothetical protein SPRG_00811 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 417.542 bits (1072), Expect = 2.864e-142
Identity = 203/310 (65.48%), Postives = 242/310 (78.06%), Query Frame = 0
Query:    2 PGPLLEESSFATLFPKYREKYLREVWPVVTRALEKVGVACELNIIEGSMTVRTTRKTSDPYVVVKARDLIKLLARSIPVQQAVKVLEDEVACDIIKIGGIVRNKERFVKRRQRLVGPDGATLKALELLTGCFILVQGNTVAAMGPYKGIKLVRNVVVDCMKNIHPIYHIKTLMIKRELAKDPTLAQENWDRFLPQFKKKNVPRHKPQVVRPKKAYTPFPPPQQPSKIDLQLESGEYFLTEQQRKLKKKQEKQAQATERAATKREEREKEFVAPAE----------ENGGREGPKLGGIDRKRLKKGVSIN 301
            P  +LEESSFATLFPKYREKYLREVWP+VT+AL+   + CELN+IEGSMTVRTT+KTSDPY+V+KARDLIKLLARSIPV QA+K+LEDEV CDIIKIGG+VRNKERFVKRRQRLVGPDGATLKA+ELLT C++LVQGNTV+AMGPY G++ VR +V DC  N+HPIY+IKTLMIKREL+KDP L  ENWDRFLP FKKKNV   KP  VR K+ YTPFPP Q PSK+D ++ESGEYF+ E +RK  KK  KQA   E    ++ E+   FVAP+E          E+    GP +  +  K L +G +++
Sbjct:   35 PTGMLEESSFATLFPKYREKYLREVWPIVTKALDAFKIVCELNLIEGSMTVRTTKKTSDPYIVLKARDLIKLLARSIPVNQAIKILEDEVQCDIIKIGGLVRNKERFVKRRQRLVGPDGATLKAIELLTNCYVLVQGNTVSAMGPYSGLRHVRKIVEDCFHNVHPIYNIKTLMIKRELSKDPALQGENWDRFLPVFKKKNVQTKKPHTVREKREYTPFPPAQMPSKVDKEIESGEYFMKEHERKAMKKAAKQAVNLEAKEVRKAEKAATFVAPSEKETQKKRKRQEDTAATGPSVHELKAKFLAQGSTLS 344          
The following BLAST results are available for this feature:
BLAST of EWM24322.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105714|gb|EWM24322.1|0.000e+0100.00ribosomal rna assembly protein mis3 [Nannochlorops... [more]
gi|1173955835|gb|OQS02745.1|5.152e-15264.29ribosomal RNA assembly protein mis3 [Thraustotheca... [more]
gi|673044703|ref|XP_008876312.1|2.067e-14773.74hypothetical protein H310_11407 [Aphanomyces invad... [more]
gi|223998947|ref|XP_002289146.1|1.842e-14666.56hypothetical protein THAPSDRAFT_268598 [Thalassios... [more]
gi|528894902|gb|EPZ35062.1|9.943e-14567.01KRR1 small subunit processome component-like prote... [more]
gi|760441851|ref|XP_011397994.1|2.404e-14371.07KRR1 small subunit processome component-like prote... [more]
gi|298708603|emb|CBJ26090.1|3.190e-14375.66conserved unknown protein [Ectocarpus siliculosus][more]
gi|698808788|ref|XP_009837423.1|4.855e-14372.43hypothetical protein H257_12020 [Aphanomyces astac... [more]
gi|669139320|ref|XP_008605228.1|1.912e-14261.29ribosomal RNA assembly protein [Saprolegnia diclin... [more]
gi|813108494|ref|XP_012194417.1|2.864e-14265.48hypothetical protein SPRG_00811 [Saprolegnia paras... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6367rna6367Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications