rna6359, rna6359 (mRNA) Nannochloropsis gaditana

Overview
Namerna6359
Unique Namerna6359
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length963
Alignment locationCM002468.1:342258..344412 +

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Properties
Property NameValue
ProductApolipoprotein/apolipophorin
Orig transcript idgnl|cribi|Naga_100047g2.6087.mrna
Orig protein idgnl|cribi|Naga_100047g2.6087
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:342258..344412 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100047g2gene6145Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6359rna6359-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24324.1cds6344Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6359 ID=rna6359|Name=rna6359|organism=Nannochloropsis gaditana|type=mRNA|length=963bp
ATGTGCCCCCCTGACGAGGTGGCTCTCCGTGAAAGCACCCGCAACAAGCT
GGAGGACCGGCCAGGCCTTTCCCCCGCCCTGACCATGATCAAAGACCTGG
AGCGGAATCCGCCCGCGGACTACCCCACGGCCAAGATCCGGCCGCTCGAG
TGGCTGCTGCGCTCGGTCGAGTACATGGAGGACGAGCTCATGGACAAGGG
CCGGTCGGGGCGGGTGGGCGGGGGGGAGGGCGAGGTCTTGGACGGAGACC
GGTCCTGGGGCCAGGTGACGGCCTTGGAGAACTACAAGTTCCACTTCCAA
CGCCTCCGCATGGTGGCCAAGGAGTTGATCATGCAGAACTTCTCGTACGG
CGGGAACATCTCGACCACGAGCATCGAGATCGTGGAGCGTCTGACCCGGT
ATTGGATCATCTTCCAGCACCATTTGAACGCCAACGAGGACTTCGTGCGG
GACGACGGGAAGCAGAATACGGAGCAGTTGACCAACACCCTGGTGCCCCT
CCAGGAGAACTACAAGTACGCGCACATGCTCGGGCAGCCCGCCCTCTGCG
CCCACGAGGCCGAGTTCCAGGCCTACGGCGTCCTCCTCACGGGGGACTTG
AAGCAGGCCTTGAAAGGCGGGGTCGGCGTGAGCCGCTCTCCGGAGGTACG
GCTGGCAGTGGACGTGCTTACCTGCGTGGAAACGGACAATTTCGCGCGGT
TTTTCAGTCTTTTGCGCCGCGCTCCTTACCTTCCGGGGTGTCTGATGGCC
AAATACGTGGAACGGATGCGCGAGAAGGCCTTGGAAGTCTGGGGCCGTGC
CTACAACCCGACCAAGGCCCGCGGCACTGCCTTTCGCACCGCCGATGTCC
TACGGGCGCTGTGCATGCAGGACGAGGACGAGCTGAAGGCCCTGGCAGTG
AGCCGACCCTGGGTGGTGGTCGACGGGGATCGCCCCGCCTCCCTTCCCCG
CCTCTTTGCCTAG
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protein sequence of rna6359

>rna6359-protein ID=rna6359-protein|Name=rna6359|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MDDLKAKLGDMAHVVARKATNTVEDIKSGDAAHIIARKAKNTGEDVKHFA
EGVGEKLKPATDKIGEVAHQTYESAKPSLDKAGAAMSGGAHSVADKFKDM
TK
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mRNA from alignment at CM002468.1:342258..344412+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6359 ID=rna6359|Name=rna6359|organism=Nannochloropsis gaditana|type=mRNA|length=2155bp|location=Sequence derived from alignment at CM002468.1:342258..344412+ (Nannochloropsis gaditana)
TACTTGCACTCACGCGGCGGACGTGACGAGTGTGCCACCGAGCGTCGCAC
GCATTTGCTGTTCATAGTTATCATCTTTGTGGAGGGTATTTAAGCGCTTG
CATTGCTGATTAAATCTGCAGCGGATGAGAAGCAGTTTTCCTGGGTTTGA
GGAAATGCAACATGTACGCATCTGCGCACGAAAAAAGAGAACATCAGGCG
GCTACTTCAAGGAGAAAGCATATCTTTTAGTCGCGTATCAAAAAGAAAGG
ACAATACAGAGAGAGAAAGTTATGGGGCCATTAGGATACCGTTGTGCTAT
GCGCGAGGCAGCTTGCAAGTCAGCTTGCAAGTCAGCTTACAATGTTTCGC
CGTCGGTAAACACCGCTTAATACGGCATCATGTTACTCGAAGTCCTTCCT
CATTCACAAATACCACTTGTAAACAGACCGCCGATATAAAGCATTTTCTA
AACAATGGATGATTTAAAAGGTGCGTGCGACAAGCCTGGAGGTGGTAGGG
GCCTGCACGCGGATTGAAAAGTTGTTACTCGGGTCCCTGTGGGAACAAGC
ATGAGAGCGAGGTGACTGCATCAGAACACTGCGCTAAAGCACTCAACATG
GATGGATAACTTCTGAAATAAGGCCAATCCTCCCGTTGTAATGACAAGGA
TAGCAAGGCTGAAAATTTTGTCCCCAATGCTAAAAGCTTGAGTAGACGGA
CGCGATAGTTGTATTTTTGCGGTGAAGATATTCTCTGTTGCTGGGCACGC
GCACATCTCTTTACTCGTCATCTCTgttctctcttcctcactAGTACTGC
GTGCTGACAACTAAATGAAGAAAAGCTAGCTAGCCAGCTTACTCAGAGGT
TGTGATCGAGCACGTCTTTTTCTCACGCCACCTAACATATCCCATAGCTA
AACTCGGCGACATGGCCCACGTGGTTGCCCGCAAGGCGACAAACACGGTG
GAAGATATCAAGAGCGGTGACGCCGCGCACATTATAGCGCGGAAAGCGAA
AAACACTGGTGAAGACGTGAAGCACTTTGCCGAGGGTGTGGGCGAGAAGC
TGAAGCCGGCGACGGACAAGATTGGGGAGGTTGCCCACCAGGTACGTCAA
AGACACTGGTCTGACTTGGGTCTTAGCTCAGCCAAAATGCGTGGAACACT
GCGCTTCAAGACATGAGTTTGGATATTGTAGGAGAAAAAGTGCCAAATAA
TCGAAGAATGATGACCGTCGCGGGTATCTCGTAATGCAACGATGTTGGAC
ATTACGTTCTTTTCCCTGAGACACTTGCGCATCCTCATGTTTCTTGAGAC
AGACTTACGAATCCGCCAAACCCTCTCTCGACAAGGCGGGTGCCGCTATG
AGCGGGGGTGCTCACTCGGTGGCAGACAAGGTAAGTGACGGCTCTGGCTC
AAGGGAATCCGCGATTAATTCCAACAGCGTTATGATGAAATATCTGCCAT
CATCAATATTCTTACTGCTACCACTTTGTTAACCTCGTAACAGTTTAAAG
ACATGACAAAGTAATGCTTTGGGAGTGACCGGTGCCACTTGATGAGCTCT
CTTCGTGAGAGACTCTGGGCTTGCGGCGAGTCCAAATTCTTTCTGGGGAT
GCTGATTGTCGTCAAAGCTATGCGATTTCAAAGTGGAACAAGCAAGTGGG
AGTTGTTTTACTACCTTTTGCTGTACGTGGGGTCTGTGAGCGTTCAGGCT
ATATTCATTTAATTACGGGGGGCAGACGTAGGACGAATCGTAACAGCCAA
CcttgaggaagggaaagagtaGACATCTACGCAACATGTTCTTTTTTGCA
CTGTGTTGTATGTCTTCTGCCTTTAAGTGAGCTTGTTCCGAAGAAATtca
agagggggaagcgagaaGCGGAACAACTTTTTCATGTTGATGGTTCGCTA
CTCGTGACAAAATAATTCAAATCTCAGAATGGACCACGAAAGAAAAGGCC
GAATATTGGGAGCAACGAGGGTAGAACGGGATAGTTCTTGACCTAATTTT
GTTGTCTTATGAGTTTCATGAAGTGTACCCGGCGTCTTGGGATAGAGAGG
CTCAACTTGTAAGACAGGCTATTATTACCACCAAACACACAACCGAAGCA
GCTGCGTAACACACCTCCCCTTTTTGTGACGTTTGAAAGATTTACGTGAC
ACTGA
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Coding sequence (CDS) from alignment at CM002468.1:342258..344412+

>rna6359 ID=rna6359|Name=rna6359|organism=Nannochloropsis gaditana|type=CDS|length=1236bp|location=Sequence derived from alignment at CM002468.1:342258..344412+ (Nannochloropsis gaditana)
ATGGATGATTTAAAAGCTAAACTCGGCGACATGGCCCACGTGGTTGCCCG
CAAGGCGACAAACACGGTGGAAGATATCAAGAGCGGTGACGCCGCGCACA
TTATAGCGCGGAAAGCGAAAAACACTGGTGAAGACGTGAAGCACTTTGCC
GAGGGTGTGGGCGAGAAGCTGAAGCCGGCGACGGACAAGATTGGGGAGGT
TGCCCACCAGACTTACGAATCCGCCAAACCCTCTCTCGACAAGGCGGGTG
CCGCTATGAGCGGGGGTGCTCACTCGGTGGCAGACAAGTTTAAAGACATG
ACAAAGTAAATGGATGATTTAAAAGCTAAACTCGGCGACATGGCCCACGT
GGTTGCCCGCAAGGCGACAAACACGGTGGAAGATATCAAGAGCGGTGACG
CCGCGCACATTATAGCGCGGAAAGCGAAAAACACTGGTGAAGACGTGAAG
CACTTTGCCGAGGGTGTGGGCGAGAAGCTGAAGCCGGCGACGGACAAGAT
TGGGGAGGTTGCCCACCAGACTTACGAATCCGCCAAACCCTCTCTCGACA
AGGCGGGTGCCGCTATGAGCGGGGGTGCTCACTCGGTGGCAGACAAGTTT
AAAGACATGACAAAGTAAATGGATGATTTAAAAGCTAAACTCGGCGACAT
GGCCCACGTGGTTGCCCGCAAGGCGACAAACACGGTGGAAGATATCAAGA
GCGGTGACGCCGCGCACATTATAGCGCGGAAAGCGAAAAACACTGGTGAA
GACGTGAAGCACTTTGCCGAGGGTGTGGGCGAGAAGCTGAAGCCGGCGAC
GGACAAGATTGGGGAGGTTGCCCACCAGACTTACGAATCCGCCAAACCCT
CTCTCGACAAGGCGGGTGCCGCTATGAGCGGGGGTGCTCACTCGGTGGCA
GACAAGTTTAAAGACATGACAAAGTAAATGGATGATTTAAAAGCTAAACT
CGGCGACATGGCCCACGTGGTTGCCCGCAAGGCGACAAACACGGTGGAAG
ATATCAAGAGCGGTGACGCCGCGCACATTATAGCGCGGAAAGCGAAAAAC
ACTGGTGAAGACGTGAAGCACTTTGCCGAGGGTGTGGGCGAGAAGCTGAA
GCCGGCGACGGACAAGATTGGGGAGGTTGCCCACCAGACTTACGAATCCG
CCAAACCCTCTCTCGACAAGGCGGGTGCCGCTATGAGCGGGGGTGCTCAC
TCGGTGGCAGACAAGTTTAAAGACATGACAAAGTAA
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Synonyms
Publications