EWM24324.1, cds6344 (CDS) Nannochloropsis gaditana

Overview
NameEWM24324.1
Unique Namecds6344
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:342712..342727 +
Alignment locationCM002468.1:343155..343348 +
Alignment locationCM002468.1:343560..343637 +
Alignment locationCM002468.1:343751..343771 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24324.1
ProductApolipoprotein/apolipophorin
Orig transcript idgnl|cribi|Naga_100047g2.6087.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:342712..342727 +
CM002468.1supercontigCM002468.1:343155..343348 +
CM002468.1supercontigCM002468.1:343560..343637 +
CM002468.1supercontigCM002468.1:343751..343771 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24324.1 vs. NCBI_GenBank
Match: gi|585105716|gb|EWM24324.1| (Apolipoprotein/apolipophorin [Nannochloropsis gaditana])

HSP 1 Score: 201.83 bits (512), Expect = 1.066e-65
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MDDLKAKLGDMAHVVARKATNTVEDIKSGDAAHIIARKAKNTGEDVKHFAEGVGEKLKPATDKIGEVAHQTYESAKPSLDKAGAAMSGGAHSVADKFKDMTK 102
            MDDLKAKLGDMAHVVARKATNTVEDIKSGDAAHIIARKAKNTGEDVKHFAEGVGEKLKPATDKIGEVAHQTYESAKPSLDKAGAAMSGGAHSVADKFKDMTK
Sbjct:    1 MDDLKAKLGDMAHVVARKATNTVEDIKSGDAAHIIARKAKNTGEDVKHFAEGVGEKLKPATDKIGEVAHQTYESAKPSLDKAGAAMSGGAHSVADKFKDMTK 102
[Close]
BLAST of EWM24324.1 vs. NCBI_GenBank
Match: gi|553183497|ref|XP_005853909.1| (hypothetical protein NGA_0442000 [Nannochloropsis gaditana CCMP526] >gi|422295153|gb|EKU22452.1| hypothetical protein NGA_0442000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 200.29 bits (508), Expect = 4.903e-65
Identity = 101/102 (99.02%), Postives = 102/102 (100.00%), Query Frame = 0 
Query:    1 MDDLKAKLGDMAHVVARKATNTVEDIKSGDAAHIIARKAKNTGEDVKHFAEGVGEKLKPATDKIGEVAHQTYESAKPSLDKAGAAMSGGAHSVADKFKDMTK 102
            MDDLKAKLGDMAHVVARKATNTVEDIKSGDAAHIIARKAKNTGEDVKHFAEGVGEKLKPATDKIGEVAHQTYESAKPSLDKAGAA+SGGAHSVADKFKDMTK
Sbjct:    1 MDDLKAKLGDMAHVVARKATNTVEDIKSGDAAHIIARKAKNTGEDVKHFAEGVGEKLKPATDKIGEVAHQTYESAKPSLDKAGAAISGGAHSVADKFKDMTK 102
The following BLAST results are available for this feature:
BLAST of EWM24324.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585105716|gb|EWM24324.1|1.066e-65100.00Apolipoprotein/apolipophorin [Nannochloropsis gadi... [more]
gi|553183497|ref|XP_005853909.1|4.903e-6599.02hypothetical protein NGA_0442000 [Nannochloropsis ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6359rna6359Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications