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Properties
| Property Name | Value |
|---|
| Product | trigger factor |
| Orig transcript id | gnl|cribi|Naga_100105g2.10572.mrna |
| Orig protein id | gnl|cribi|Naga_100105g2.10572 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:332061..334394 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6356 ID=rna6356|Name=rna6356|organism=Nannochloropsis gaditana|type=mRNA|length=2025bp
ATGGCCGCATGCCGCATACCAACGAGGGGGAGGTGTCACATTTCTTGGAC
AGGTACCGCACTTTCATCAGCGTGTACTGGCAACAAGAGATTCGCGACGA
GCCAGACGGATGCAGCCAAATGGCGTCAGATCTACAGCCAAAAACCTCCC
CCCCATGCCGGAAAAAAAGCCTTGCCTCCCCAAGAACTCGCCCGGCTGGA
CGCTAGAAACGGCATCCTCGTTGCCCAGGAATCAGACGAAGGCATTAAAA
CTTTCAGAGCTTTTGCTAGAGGGAAGGAAGATTACGTGTTGCGCTTCGGT
GACCATGTGTGCGTGATAGGCAAGAACGGGGCGGGAAAGTCCTTGTTTTG
TCAGGCGCTCGGCGGGCATAGAGAGGTCCTGCCTCACGGGATGATGAGTA
TGGAAGACACAGAAGAATCTTTTCAGGGTGCAGATGCCAAGCAAGAGCGG
CTCGAGGGGACCGGGTGCAAGGAAGCGGAGAAAGAAGGCGCCGGGAAAGC
CACCGGGCGAGAGGGTGTCATGTTCATGTCCTTCAGCATGCACGGGCATT
TCCTGGCCCGCTACAAAGACCGAGTGGTGGCGGATGTTCTGGGAGGGTCA
AGTGATCCCTTGGCGCGACGGCTTATCGTGCAACTGGGTCTGTACCCCCT
CTGGTACAAGAGGGTCCACATGCTATCCACGGGAGAGATCCGGAAGGTGC
TTTTGGCCGCCACCCTGAGCAAATCCCCGCGGGTCCTCGTCCTAGACAAG
CCTTTTGATGGACTCGACGCTCCCTCACGCAAAAGCCTCCACACCGTCCT
CTCCCAGCTCTGCCAGGGCTTCCCCCGCCTCCTTGTCGACCTGGGCTTGG
CCCGCCGCTCCGTCCCGCGCACGTCCATGGTGCTGGTCACGCACCGTCGG
GAGGAGGTCCCTCAGGAGGTGGGGCGCCTGGTGTCCGTGGACGGCTTCGA
AATCGAATACGAGGGCGCCATGGAAGCTCAGCGGCTTGCATCTCTTCGCG
CCCTGGGACCTGCCCCCCTCCCTCCCCTCCCCAGAACCCTGCCCAAGCTC
TACCGGCCCCAGGTACCCCGCGCCAGCACCTTGAGCAGCCCCAAGGCGCG
CGAGAACCTCCAGACCGTCCTCCTCTTCGACGGGGTCCGCTACACGAAGG
GGGAGCATGTCTTGCTCAACACCGTGAGCTGGCGGGTGAAGCAGGGAGAG
GTATGGGCTCTGAAGGGCCTGAACGGTGCGGGCAAGTCCACCTTGACCCG
GCTCCTTCTGGAGCGATGGAGAGAAGACCTCGAGGAGCGCCGGCGTCGGG
CGGGAAAAGGGGGGGAAGGAGGGCGGGCGGAGGGGCATACCGGTCCAAGC
GCGCAGGTGCAGGGTCGCGTGGCGGTGGGGGTGCCTCATATCGGCGTGGT
CTCCACCGAGCTCCACCTCCAGTTGGCAGCCACCTGTTCGGAATGGCCCG
CCTCCGCCGTCGTCCTCTCCGGCCTGGAGCCCCTGTCCTCCGCGGGGATG
GTGGACCCGGCGTCTTCCCCACCCCCGCCGCCACACCCACCCGTCGATCA
AGGGCAGCCAGAGCACGAACGGCTGGAGCGGCCATTCCTGAACCCGCCTG
CCCGCCTTCTCCCGCTCCTGAAAGAGTGGGGAGACATTCTGGGAATTTCC
AGTCTGTACTCCACCCCCTTCGGGCGCCTGTCACAGGGCCAACAGAAGCT
CGTCGTCATCGCCCGCGCCCTCATAGGAGCCCCTCCTCTCCTCATCTTCG
ACGAGGCCTGCCAAGGTCTCGATAGCCAGCATCGCGCCTTGATCATGAGC
CTTTTGTCCACGATTGCCAAATCTGCTTCGTCGTGGTTGACGTTGCTGTA
CATCAGTCACCATGAGGACGAGGCATTGCCCGAAGTGACCTCGCACGTTC
TAGAGCTCGAGCGCGGTCGGGTGTCGTTTGCCGGAAAGTCTGAGCAGTGG
AATGAACTGGCGTTGAAAAGGCAGAAGGAGCACGAGGCGGGGGGAGGAAG
AAGGGGGGAATCGGACTCAGTCTAG back to topprotein sequence of rna6356 >rna6356-protein ID=rna6356-protein|Name=rna6356|organism=Nannochloropsis gaditana|type=polypeptide|length=501bp
MLVNQRRCAAMAAILFSAWNAQAFIPRLPANLYQRQQHSKLSLYSTLSEN
VQTTVEARANSSVALFVTVPGTLTRKAYDQACKRMIEESKTSIPGFRKGQ
RVPEQVLLNAVGGPQVIINEALDILCEDALKKAIDESDVKAVGQASLVSH
PETLIAAFKPGEPIVMELTVDVYPEVEFTGPYAGLKVQVDRIPLENEKVK
QALESLRKKRVRLVDTAPGYEGKLGDSAIVNMQAFQMLSDGTRGPEMRNI
AAGEGVEVVLEEGRFLPGVVEGLVGKPAGCKVVIPVTFPENIRDPQLAGI
KAEFEVEILELKNRIVPEIDEQFAKEIRPDLTPEGIKQEVVDAVNADAEE
RTKMNRNKALEEALLAITRAEIPECWIVEETRRKFALMMQEVSTQGKSEE
EVKKMITKENFEKYREIAYPQTVKTLMLGVATAKVAEDEGLQVDPLELQD
QIDLRKLEAERQGLDEKALRDQLEAKLLADMVLDRLADQADITYVDVSDD
A back to topmRNA from alignment at CM002468.1:332061..334394+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6356 ID=rna6356|Name=rna6356|organism=Nannochloropsis gaditana|type=mRNA|length=2334bp|location=Sequence derived from alignment at CM002468.1:332061..334394+ (Nannochloropsis gaditana)
CCCTGGCACGCTTACTCACGCATGTTCCGACCACAATGATGCGCAGGCGA
AATCATGCTTGTCAATCAACGACGATGCGCAGCCATGGCTGCTATCCTTT
TCAGTGCCTGGAATGCGCAGGCTTTTatccctcgccttcccgccAACTTG
TATCAGCGCCAGCAGCATAGCAAGTTGTCCCTCTACTCGACACTATCAGA
AAATGTCCAGACAACGTAAGTAGTTGTGCCATTATCAGAAAACTATCCGT
ATCATTTATCGCCTTGATCATGTTTGTCGATTTCCCCGTATTCGGGCGAC
TTTGGGCAAAGTACTAACTCGCCCAAGTTGCACTTGACTTTGTCGTCTCT
TACACCCCTTGGCTCTCATGTTGCGTCTATTACGGTCGAAAGTGAGATTT
TTCTATGCTAAATACATGTTAACTTTATCGCAAATTATTTGACCGCCTTA
ACCTCCGAAAGGCATGTAGTATGTATCTGGCAAAACCTTTCACGATACTT
TTCTCTTTTGATGGATACCTGTTCAGAGATCTGCATTTGCGAATGCACCA
GATAATTTACGCTCTATATATGCAATCTTTTCTCATTTTTATCCCTCTAT
TTCCAATGAGGAAACGTTTTCTCATttgccatcctcccctcccctctttc
gaTAACAGCGTGGAGGCCCGCGCTAATTCCTCTGTTGCCCTCTTTGTCAC
CGTCCCTGGCACGCTTACCCGCAAGGCTTACGACCAGGCCTGCAAACGCA
TGATCGAGGAAAGCAAAACGTCAATCCCGGGCTTCCGGAAAGGCCAGCGT
GTCCCCGAGCAAGTCCTTTTGAATGCGGTGGGCGGCCCCCAGGTCATCAT
CAATGAAGCTCTGGACATTCTGTGCGAAGACGCACTGAAAAAGGCCATCG
ACGAATCGGACgtgaaggcggtggggcaAGCCTCATTGGTGTCACACCCT
GAGACCCTGATCGCCGCCTTCAAGCCCGGGGAGCCCATTGTCATGGAGCT
GACTGTGGACGTGTACCCGGAGGTAGAATTCACGGGTCCTTACGCGGGCC
TGAAGGTGCAGGTGGATCGCATTCCCTTGGAGAACGAGAAGGTCAAACAG
GCGCTGGAATCGCTCCGAAAGAAGCGCGTCCGTCTAGTGGACACGGCGCC
TGGCTACGAGGGCAAGCTGGGGGACTCGGCCATCGTGAACATGCAGGCGT
TTCAGATGCTCTCGGACGGCACCCGTGGGCCCGAGATGAGGAACATCGCG
GCGGgtgagggcgtggaggttgtgttggaggaggggcgattCCTGCCGGG
CGTCGTCGAGGGTCTGGTCGGGAAGCCGGCGGGCTGCAAGGTGGTGATCC
CCGTGACTTTCCCCGAGAACATCCGGGACCCGCAGCTGGCCGGTATCAAA
GCCGAGTTCGAGGTGGAGATATTGGAGCTGAAAAACCGGATCGTTCCTGA
GATTGACGAGCAGTTCGCCAAGGAGATTCGACCGGACTTGACGCCGGAGG
GAATCAAACAAGAGGTTGTGGACGCCGTGAATGCCgatgcggaggagcgg
aCCAAGATGAACCGCAACaaggctctggaggaggcgctgctgGCAATCAC
TCGGGCCGAGATCCCGGAGTGCTGGATTGTGGAGGAGACGCGGCGGAAGT
TCGCCTTGATGATGCAAGAGGTGTCCACGCAGGGcaagtcggaggaggag
gtgaaaaagATGATAACCAAGGAAAACTTCGAGAAGTATCGAGAAATCGC
CTATCCGCAGACGGTCAAGACTTTGATGCTGGGTGTGGCGACTGCCAAAG
tggcggaagacgagggtTTGCAGGTGGACCCGCTGGAGCTGCAGGACCAG
ATCGATTTGAGAaagctggaggcggagagacAAGGGCTGGACGAGAAGGC
CTTGCGCGATCAGCTCGAGGCGAAGCTCTTAGCAGACATGGTCTTGGATC
GTCTCGCGGACCAGGCGGATATAACGTACGTGGACGTGAGCGACGATGct
tgagggaagagggacacaggcagggggaaaaggggccggggggggaagtt
cACATGGTTGGCAAGGCAATAGGCGACATGCCCCGTCcagaggcaggcgg
gaggcggcACAGGTGGTTTGTAATTGTGTCGCAAATATCTTTAAAATCGA
GAGATTGATGTCGGGAGCTGGAGCAAGAAGGAGCGGTGGagacaggagag
ggaggacgccgtACGAGGGAGGGTCAGCACATAATGGGTTCTCGCATGAG
GACATAAAAGACGAGCATGAGGCAGGACGGCGCATAAAGAAACACGCGTG
TGGACGAAGACAATAAAATGCGCGAGGCTACGGA back to topCoding sequence (CDS) from alignment at CM002468.1:332061..334394+ >rna6356 ID=rna6356|Name=rna6356|organism=Nannochloropsis gaditana|type=CDS|length=3012bp|location=Sequence derived from alignment at CM002468.1:332061..334394+ (Nannochloropsis gaditana)
ATGCTTGTCAATCAACGACGATGCGCAGCCATGGCTGCTATCCTTTTCAG
TGCCTGGAATGCGCAGGCTTTTatccctcgccttcccgccAACTTGTATC
AGCGCCAGCAGCATAGCAAGTTGTCCCTCTACTCGACACTATCAGAAAAT
GTCCAGACAACCGTGGAGGCCCGCGCTAATTCCTCTGTTGCCCTCTTTGT
CACCGTCCCTGGCACGCTTACCCGCAAGGCTTACGACCAGGCCTGCAAAC
GCATGATCGAGGAAAGCAAAACGTCAATCCCGGGCTTCCGGAAAGGCCAG
CGTGTCCCCGAGCAAGTCCTTTTGAATGCGGTGGGCGGCCCCCAGGTCAT
CATCAATGAAGCTCTGGACATTCTGTGCGAAGACGCACTGAAAAAGGCCA
TCGACGAATCGGACgtgaaggcggtggggcaAGCCTCATTGGTGTCACAC
CCTGAGACCCTGATCGCCGCCTTCAAGCCCGGGGAGCCCATTGTCATGGA
GCTGACTGTGGACGTGTACCCGGAGGTAGAATTCACGGGTCCTTACGCGG
GCCTGAAGGTGCAGGTGGATCGCATTCCCTTGGAGAACGAGAAGGTCAAA
CAGGCGCTGGAATCGCTCCGAAAGAAGCGCGTCCGTCTAGTGGACACGGC
GCCTGGCTACGAGGGCAAGCTGGGGGACTCGGCCATCGTGAACATGCAGG
CGTTTCAGATGCTCTCGGACGGCACCCGTGGGCCCGAGATGAGGAACATC
GCGGCGGgtgagggcgtggaggttgtgttggaggaggggcgattCCTGCC
GGGCGTCGTCGAGGGTCTGGTCGGGAAGCCGGCGGGCTGCAAGGTGGTGA
TCCCCGTGACTTTCCCCGAGAACATCCGGGACCCGCAGCTGGCCGGTATC
AAAGCCGAGTTCGAGGTGGAGATATTGGAGCTGAAAAACCGGATCGTTCC
TGAGATTGACGAGCAGTTCGCCAAGGAGATTCGACCGGACTTGACGCCGG
AGGGAATCAAACAAGAGGTTGTGGACGCCGTGAATGCCgatgcggaggag
cggaCCAAGATGAACCGCAACaaggctctggaggaggcgctgctgGCAAT
CACTCGGGCCGAGATCCCGGAGTGCTGGATTGTGGAGGAGACGCGGCGGA
AGTTCGCCTTGATGATGCAAGAGGTGTCCACGCAGGGcaagtcggaggag
gaggtgaaaaagATGATAACCAAGGAAAACTTCGAGAAGTATCGAGAAAT
CGCCTATCCGCAGACGGTCAAGACTTTGATGCTGGGTGTGGCGACTGCCA
AAGtggcggaagacgagggtTTGCAGGTGGACCCGCTGGAGCTGCAGGAC
CAGATCGATTTGAGAaagctggaggcggagagacAAGGGCTGGACGAGAA
GGCCTTGCGCGATCAGCTCGAGGCGAAGCTCTTAGCAGACATGGTCTTGG
ATCGTCTCGCGGACCAGGCGGATATAACGTACGTGGACGTGAGCGACGAT
GcttgaATGCTTGTCAATCAACGACGATGCGCAGCCATGGCTGCTATCCT
TTTCAGTGCCTGGAATGCGCAGGCTTTTatccctcgccttcccgccAACT
TGTATCAGCGCCAGCAGCATAGCAAGTTGTCCCTCTACTCGACACTATCA
GAAAATGTCCAGACAACCGTGGAGGCCCGCGCTAATTCCTCTGTTGCCCT
CTTTGTCACCGTCCCTGGCACGCTTACCCGCAAGGCTTACGACCAGGCCT
GCAAACGCATGATCGAGGAAAGCAAAACGTCAATCCCGGGCTTCCGGAAA
GGCCAGCGTGTCCCCGAGCAAGTCCTTTTGAATGCGGTGGGCGGCCCCCA
GGTCATCATCAATGAAGCTCTGGACATTCTGTGCGAAGACGCACTGAAAA
AGGCCATCGACGAATCGGACgtgaaggcggtggggcaAGCCTCATTGGTG
TCACACCCTGAGACCCTGATCGCCGCCTTCAAGCCCGGGGAGCCCATTGT
CATGGAGCTGACTGTGGACGTGTACCCGGAGGTAGAATTCACGGGTCCTT
ACGCGGGCCTGAAGGTGCAGGTGGATCGCATTCCCTTGGAGAACGAGAAG
GTCAAACAGGCGCTGGAATCGCTCCGAAAGAAGCGCGTCCGTCTAGTGGA
CACGGCGCCTGGCTACGAGGGCAAGCTGGGGGACTCGGCCATCGTGAACA
TGCAGGCGTTTCAGATGCTCTCGGACGGCACCCGTGGGCCCGAGATGAGG
AACATCGCGGCGGgtgagggcgtggaggttgtgttggaggaggggcgatt
CCTGCCGGGCGTCGTCGAGGGTCTGGTCGGGAAGCCGGCGGGCTGCAAGG
TGGTGATCCCCGTGACTTTCCCCGAGAACATCCGGGACCCGCAGCTGGCC
GGTATCAAAGCCGAGTTCGAGGTGGAGATATTGGAGCTGAAAAACCGGAT
CGTTCCTGAGATTGACGAGCAGTTCGCCAAGGAGATTCGACCGGACTTGA
CGCCGGAGGGAATCAAACAAGAGGTTGTGGACGCCGTGAATGCCgatgcg
gaggagcggaCCAAGATGAACCGCAACaaggctctggaggaggcgctgct
gGCAATCACTCGGGCCGAGATCCCGGAGTGCTGGATTGTGGAGGAGACGC
GGCGGAAGTTCGCCTTGATGATGCAAGAGGTGTCCACGCAGGGcaagtcg
gaggaggaggtgaaaaagATGATAACCAAGGAAAACTTCGAGAAGTATCG
AGAAATCGCCTATCCGCAGACGGTCAAGACTTTGATGCTGGGTGTGGCGA
CTGCCAAAGtggcggaagacgagggtTTGCAGGTGGACCCGCTGGAGCTG
CAGGACCAGATCGATTTGAGAaagctggaggcggagagacAAGGGCTGGA
CGAGAAGGCCTTGCGCGATCAGCTCGAGGCGAAGCTCTTAGCAGACATGG
TCTTGGATCGTCTCGCGGACCAGGCGGATATAACGTACGTGGACGTGAGC
GACGATGcttga back to top
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