rna6352, rna6352 (mRNA) Nannochloropsis gaditana

Overview
Namerna6352
Unique Namerna6352
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length612
Alignment locationCM002468.1:325227..325829 +

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Properties
Property NameValue
ProductCtr copper transporter
Orig transcript idgnl|cribi|Naga_100105g5.10588.mrna
Orig protein idgnl|cribi|Naga_100105g5.10588
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:325227..325829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100105g5gene6139Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6352rna6352-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24349.1cds6337Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6352 ID=rna6352|Name=rna6352|organism=Nannochloropsis gaditana|type=mRNA|length=612bp
ATGACGCGTGGCATGACAACCAGGCAGAACGTGATAAAGGCATTGTACGT
AGGCATCTGGAGCGCATTACTAGCAGCAAGTTGGGCCTGTTTCACGATCA
GACAGCGTCCCTGGTGCAGTTTGGAACAGAAAAGGAAAGATGCACACCTT
CTGGTGTTGACTGCCTTCAGCACCTATGGCCACGGGGACTACGGCTCAGT
GCAGCAACTCAACGTGAATAAATTGATTCAGTTGCGCCGAGTGCGGGACA
ACGGTCAGACAGGCTATCATTACGACCAGGCTCTCTTCAATTTTGACCTT
AAAGCCGACCTCTCCCCAGCCTTCGATTGGAATATAAAGCAACTCTTTGT
CTTCCTTGTGGTCGAGTACGAGAGCAAAAAGAATGTCTTGAGCCAGGTCG
TCGTGTGGGACCGCATCATTGAGAGAAAAGAAGATGCTGTGCTGAACTTG
AAAGCCGAATTTTTGGATTACCCGCTTCGAGATCCAGCGGTAGAGCTACG
AAACAAGAACATCACCCTCCGCCTTGTGTGGGACCACATGCCTTTGACCG
GTACCCTCTTCATGCGATCGGATCTTGTCAACTCTACCATCCTACCAGAT
CAATACACATAG
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protein sequence of rna6352

>rna6352-protein ID=rna6352-protein|Name=rna6352|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MDDGGSDRGMDMMGSMSMTFAPFSTYQLKVIWGWWDVQTEGQYIATLLAM
FVAVVLFRWLVKLETAYVKRALAVTTLAGNIDCSSRGEREGKSYRNDTLG
VNTELEESLLSREGHEDAAGLGPRVSSLSKVPFQKRVVQAALSAFLYMYA
LLLMLAAMTYNPGIFLALGIGYAVGELFFGTAFETELISGRRERKERCCE
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mRNA from alignment at CM002468.1:325227..325829+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6352 ID=rna6352|Name=rna6352|organism=Nannochloropsis gaditana|type=mRNA|length=603bp|location=Sequence derived from alignment at CM002468.1:325227..325829+ (Nannochloropsis gaditana)
ATGGATGATGGTGGAAGTGACCGCGGGATGGATATGATGGGTTCGATGAG
CATGACTTTCGCTCCATTTTCTACCTACCAGCTGAAAGTCATCTGGGGAT
GGTGGGACGTCCAAACTGAGGGGCAGTACATTGCAACGCTTCTTGCCATG
TTTGTTGCTGTCGTTTTGTTCCGTTGGCTTGTAAAGCTCGAGACGGCGTA
CGTAAAGAGGGCCCTCGCAGTCACGACGTTAGCTGGTAACATCGATTGCT
CCAgccgtggagaaagggaaggtaaATCCTATAGAAATGACACTTTGGGT
GTGAATACGGAACTTGAGGAATCCCTTCTCTCGAGGGAAGGTCATGAGGA
TGCCGCCGGGCTTGGCCCGAGGGTTAGCTCCTTAAGTAAGGTGCCATTTC
AAAAACGGGTCGTGCAGGCCGCTTTATCCGCTTTTCTGTATATGTATGCG
CTGCTCTTGATGCTCGCGGCCATGACGTATAATCCTGGCATCTTTTTGGC
TTTAGGGATAGGCTACGCTGTTGGTGAACTTTTTTTCGGTACTGCTTTTG
AGACGGAGTTGATTagcgggaggcgggagaggaaggagaggtgctGCGAG
TAA
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Coding sequence (CDS) from alignment at CM002468.1:325227..325829+

>rna6352 ID=rna6352|Name=rna6352|organism=Nannochloropsis gaditana|type=CDS|length=603bp|location=Sequence derived from alignment at CM002468.1:325227..325829+ (Nannochloropsis gaditana)
ATGGATGATGGTGGAAGTGACCGCGGGATGGATATGATGGGTTCGATGAG
CATGACTTTCGCTCCATTTTCTACCTACCAGCTGAAAGTCATCTGGGGAT
GGTGGGACGTCCAAACTGAGGGGCAGTACATTGCAACGCTTCTTGCCATG
TTTGTTGCTGTCGTTTTGTTCCGTTGGCTTGTAAAGCTCGAGACGGCGTA
CGTAAAGAGGGCCCTCGCAGTCACGACGTTAGCTGGTAACATCGATTGCT
CCAgccgtggagaaagggaaggtaaATCCTATAGAAATGACACTTTGGGT
GTGAATACGGAACTTGAGGAATCCCTTCTCTCGAGGGAAGGTCATGAGGA
TGCCGCCGGGCTTGGCCCGAGGGTTAGCTCCTTAAGTAAGGTGCCATTTC
AAAAACGGGTCGTGCAGGCCGCTTTATCCGCTTTTCTGTATATGTATGCG
CTGCTCTTGATGCTCGCGGCCATGACGTATAATCCTGGCATCTTTTTGGC
TTTAGGGATAGGCTACGCTGTTGGTGAACTTTTTTTCGGTACTGCTTTTG
AGACGGAGTTGATTagcgggaggcgggagaggaaggagaggtgctGCGAG
TAA
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Synonyms
Publications