EWM24349.1, cds6337 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24349.1 vs. NCBI_GenBank
Match: gi|585105743|gb|EWM24349.1| (Ctr copper transporter [Nannochloropsis gaditana]) HSP 1 Score: 410.609 bits (1054), Expect = 4.711e-145 Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query: 1 MDDGGSDRGMDMMGSMSMTFAPFSTYQLKVIWGWWDVQTEGQYIATLLAMFVAVVLFRWLVKLETAYVKRALAVTTLAGNIDCSSRGEREGKSYRNDTLGVNTELEESLLSREGHEDAAGLGPRVSSLSKVPFQKRVVQAALSAFLYMYALLLMLAAMTYNPGIFLALGIGYAVGELFFGTAFETELISGRRERKERCCE 200
MDDGGSDRGMDMMGSMSMTFAPFSTYQLKVIWGWWDVQTEGQYIATLLAMFVAVVLFRWLVKLETAYVKRALAVTTLAGNIDCSSRGEREGKSYRNDTLGVNTELEESLLSREGHEDAAGLGPRVSSLSKVPFQKRVVQAALSAFLYMYALLLMLAAMTYNPGIFLALGIGYAVGELFFGTAFETELISGRRERKERCCE
Sbjct: 1 MDDGGSDRGMDMMGSMSMTFAPFSTYQLKVIWGWWDVQTEGQYIATLLAMFVAVVLFRWLVKLETAYVKRALAVTTLAGNIDCSSRGEREGKSYRNDTLGVNTELEESLLSREGHEDAAGLGPRVSSLSKVPFQKRVVQAALSAFLYMYALLLMLAAMTYNPGIFLALGIGYAVGELFFGTAFETELISGRRERKERCCE 200
BLAST of EWM24349.1 vs. NCBI_GenBank
Match: gi|1069167074|ref|XP_018077131.1| (Ctr copper transporter [Phialocephala scopiformis] >gi|972546163|gb|KUJ22776.1| Ctr copper transporter [Phialocephala scopiformis]) HSP 1 Score: 62.003 bits (149), Expect = 8.631e-9 Identity = 62/188 (32.98%), Postives = 81/188 (43.09%), Query Frame = 0
Query: 1 MDDGGSDR---GMDM----MGSMSMTFAPFSTYQLKVIWGWWDVQTEGQYIATLLAMFVAVVLFRWLVKLETAYVKRALAVTTLAGNIDCSSRGEREGKSYRNDTLGVNTELEESLLSREGHEDAAGLGPRVSSLSKVPFQKRVVQAALSAFLYMYALLLMLAAMTYNPGIFLALGIGYAVGELFFGT 181
MD D G DM M SM+M F ++T L +I+ WW VQT I +LLA+ +A+T L + SSR R D + + TE L S G +SK + VV+AAL A YA +LML MTYN + LA+G+G VG L FG
Sbjct: 1 MDHSHMDHSAMGHDMPATDMCSMNMLFT-WNTQNLCIIFHWWHVQTTPGLIFSLLAV---------------------VALTALYEALRASSRRYERWVEKRTDEVPLVTESTPFLWS----------GRNQVEVSK---RAHVVKAALYAVQNFYAFMLMLLFMTYNGWVMLAVGVGAFVGYLLFGN 153
BLAST of EWM24349.1 vs. NCBI_GenBank
Match: gi|1045916712|gb|OCH93770.1| (Ctr-domain-containing protein [Obba rivulosa]) HSP 1 Score: 57.3806 bits (137), Expect = 7.297e-7 Identity = 44/177 (24.86%), Postives = 80/177 (45.20%), Query Frame = 0
Query: 30 VIWGWWDVQTEGQYIATLLAMFVAVVLFRWLVKLETAYVKRALAVTTLAGNIDCSSRGEREGKSYRNDTLGVNTELEESLLSREGHEDAAGLGPRVSSL-----SKVPFQKRVVQAALSAFLYMYALLLMLAAMTYNPGIFLALGIGYAVGELFFGTAFETE-LISGRRERKERCCE 200
+++ W + + G ++ + LA+ VL+ WL + A +R +A + +G+ G T + S S +G + AGL + +L + +P R+ +AAL + LML MTYN + +A+ IG A+G FGT + + +++G + K C
Sbjct: 21 IVFREWHITSTGAFVLSCLAVVALGVLYEWLRGAQRALDRR------IAAQLSAQGKGKARG----------GTPVSRS--SLDGDSEEAGLLTGLPALKSRTGTPLPISARISRAALYGITVFLSFFLMLVFMTYNAYLIVAVVIGAALGHFLFGTHLDVDGVLAGAVDGKGMACH 179 The following BLAST results are available for this feature:
BLAST of EWM24349.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 3
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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