EWM24349.1, cds6337 (CDS) Nannochloropsis gaditana

Overview
NameEWM24349.1
Unique Namecds6337
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:325227..325829 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24349.1
ProductCtr copper transporter
Orig transcript idgnl|cribi|Naga_100105g5.10588.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:325227..325829 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0035434copper ion transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005375copper ion transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR007274Cop_transporter
Homology
BLAST of EWM24349.1 vs. NCBI_GenBank
Match: gi|585105743|gb|EWM24349.1| (Ctr copper transporter [Nannochloropsis gaditana])

HSP 1 Score: 410.609 bits (1054), Expect = 4.711e-145
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0
Query:    1 MDDGGSDRGMDMMGSMSMTFAPFSTYQLKVIWGWWDVQTEGQYIATLLAMFVAVVLFRWLVKLETAYVKRALAVTTLAGNIDCSSRGEREGKSYRNDTLGVNTELEESLLSREGHEDAAGLGPRVSSLSKVPFQKRVVQAALSAFLYMYALLLMLAAMTYNPGIFLALGIGYAVGELFFGTAFETELISGRRERKERCCE 200
            MDDGGSDRGMDMMGSMSMTFAPFSTYQLKVIWGWWDVQTEGQYIATLLAMFVAVVLFRWLVKLETAYVKRALAVTTLAGNIDCSSRGEREGKSYRNDTLGVNTELEESLLSREGHEDAAGLGPRVSSLSKVPFQKRVVQAALSAFLYMYALLLMLAAMTYNPGIFLALGIGYAVGELFFGTAFETELISGRRERKERCCE
Sbjct:    1 MDDGGSDRGMDMMGSMSMTFAPFSTYQLKVIWGWWDVQTEGQYIATLLAMFVAVVLFRWLVKLETAYVKRALAVTTLAGNIDCSSRGEREGKSYRNDTLGVNTELEESLLSREGHEDAAGLGPRVSSLSKVPFQKRVVQAALSAFLYMYALLLMLAAMTYNPGIFLALGIGYAVGELFFGTAFETELISGRRERKERCCE 200          
BLAST of EWM24349.1 vs. NCBI_GenBank
Match: gi|1069167074|ref|XP_018077131.1| (Ctr copper transporter [Phialocephala scopiformis] >gi|972546163|gb|KUJ22776.1| Ctr copper transporter [Phialocephala scopiformis])

HSP 1 Score: 62.003 bits (149), Expect = 8.631e-9
Identity = 62/188 (32.98%), Postives = 81/188 (43.09%), Query Frame = 0
Query:    1 MDDGGSDR---GMDM----MGSMSMTFAPFSTYQLKVIWGWWDVQTEGQYIATLLAMFVAVVLFRWLVKLETAYVKRALAVTTLAGNIDCSSRGEREGKSYRNDTLGVNTELEESLLSREGHEDAAGLGPRVSSLSKVPFQKRVVQAALSAFLYMYALLLMLAAMTYNPGIFLALGIGYAVGELFFGT 181
            MD    D    G DM    M SM+M F  ++T  L +I+ WW VQT    I +LLA+                     +A+T L   +  SSR        R D + + TE    L S          G     +SK   +  VV+AAL A    YA +LML  MTYN  + LA+G+G  VG L FG 
Sbjct:    1 MDHSHMDHSAMGHDMPATDMCSMNMLFT-WNTQNLCIIFHWWHVQTTPGLIFSLLAV---------------------VALTALYEALRASSRRYERWVEKRTDEVPLVTESTPFLWS----------GRNQVEVSK---RAHVVKAALYAVQNFYAFMLMLLFMTYNGWVMLAVGVGAFVGYLLFGN 153          
BLAST of EWM24349.1 vs. NCBI_GenBank
Match: gi|1045916712|gb|OCH93770.1| (Ctr-domain-containing protein [Obba rivulosa])

HSP 1 Score: 57.3806 bits (137), Expect = 7.297e-7
Identity = 44/177 (24.86%), Postives = 80/177 (45.20%), Query Frame = 0
Query:   30 VIWGWWDVQTEGQYIATLLAMFVAVVLFRWLVKLETAYVKRALAVTTLAGNIDCSSRGEREGKSYRNDTLGVNTELEESLLSREGHEDAAGLGPRVSSL-----SKVPFQKRVVQAALSAFLYMYALLLMLAAMTYNPGIFLALGIGYAVGELFFGTAFETE-LISGRRERKERCCE 200
            +++  W + + G ++ + LA+    VL+ WL   + A  +R      +A  +    +G+  G           T +  S  S +G  + AGL   + +L     + +P   R+ +AAL       +  LML  MTYN  + +A+ IG A+G   FGT  + + +++G  + K   C 
Sbjct:   21 IVFREWHITSTGAFVLSCLAVVALGVLYEWLRGAQRALDRR------IAAQLSAQGKGKARG----------GTPVSRS--SLDGDSEEAGLLTGLPALKSRTGTPLPISARISRAALYGITVFLSFFLMLVFMTYNAYLIVAVVIGAALGHFLFGTHLDVDGVLAGAVDGKGMACH 179          
The following BLAST results are available for this feature:
BLAST of EWM24349.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585105743|gb|EWM24349.1|4.711e-145100.00Ctr copper transporter [Nannochloropsis gaditana][more]
gi|1069167074|ref|XP_018077131.1|8.631e-932.98Ctr copper transporter [Phialocephala scopiformis]... [more]
gi|1045916712|gb|OCH93770.1|7.297e-724.86Ctr-domain-containing protein [Obba rivulosa][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6352rna6352Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications