|
|
Properties
| Property Name | Value |
|---|
| Product | ankyrin repeat protein |
| Orig transcript id | gnl|cribi|Naga_100179g8.5429.mrna |
| Orig protein id | gnl|cribi|Naga_100179g8.5429 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002456.1 | supercontig | CM002456.1:50288..51493 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna635 ID=rna635|Name=rna635|organism=Nannochloropsis gaditana|type=mRNA|length=2307bp
GATCCTGCATGTCGCCAAAACGCTGTTGGACTGCTTCATGTGTCGCTGGA
TTAACCCATCTTACCAGCCCGTATCGCTATCCCACTACAATACATCCTGA
CACAAAAGTGGTATGAGGAATGGAGGACTGCGAGGATGAAGACTTGATCG
ATCTTACTGGAACTGGTGAAGGCAATTTCTGCGTTACCGCAAGGGCTCAG
AAGCAGTTACGACTCAGAAACACAGCAGTGCGAAATGGGACTGGAACTGA
TTGCGCCGCGAAGGCTCTTACTCAAAACCATGTCCCAAAATTGGTATCGA
TAGACGGTGATTTCTCAAAAGCACCATGCATCTTTGCGGTCGCCGCACCA
TGTTCACGAACAGAGGGACCTTTCCAAGGCGAGCGAGTTCCTGTCAACAG
ACTGCACGAAGATGCAGGGACAGCATCGACCAATGTAACGGAATGCTCCC
TGAATCAGGGAGAACGCGAGAGTGGGGGTGAAGAAAAGGAAGATTACGAT
GAGAAAAAGGGGGCCCGATTAGGTGACGCAGTGTGGATTGGAGACGCAAC
TCCCAAAGCCTTTTCACTCAGTCCGGTCGACTTGACCTCTCCACCGTACG
ACACAAGGGCCAGCAAGCGGCGCAAGAGTGAGCATGGCAGGATCAGTGAC
GTTGATATATCACCCGCTTCTTGGACGAGAAGAAGTGCTGGCTGTGATGG
TGCCCAAGATACATATCTTGGGGAAAGCACCTTGCCTGTGACGTCAGGCG
GGAAGATGTGCGTAGAGGACCCGAGGCCGGGGGAAGGCGGGGTCTCAGAG
ACCATAAAGCGTGGGACAACCAACAGGAGAGCTCGAGAACTCAGTGTCGA
TGGAGGGGAAACGCGTGTCGAACATTCGGGAGCAGGGAAGGCATTAGGGT
GTGGGGACGACATTGACTATTTGGGCCCTCCTTCTCCAATATCGATCTCC
TCCTCGTCTTCCACCTCCAGCCCCTCCTCCCCCCCCTTTCCCCCCTCACG
GCAACCCCTCCCAGCTGCGCTTCGACTGCACCCAGATTCGCCGTCCATCC
ACGCGGAAAACGGGGAGGAAAACCCAGAGGAGCTGGCCACCCGCCCCGCT
GCCGAGCTCCGGGCCCATCTCCGTGCCCTGGGTGTGCCTGCCACGGGCCG
AACCAAAGCTCAACTCGCTATCCGCCTCCATGCCTGTCTGCGTGCGCGGC
GGCTGGCAAACTTCCCTTCGCACAGCACGGATCGCTACAGCGACCGACGG
GGAAAAGTCAACAAAGCGGACCTGGCCCGAGGTGACCACGGACGGGCCCT
CTGCCGCCTCTGCCAGCAAGAATGCCCCAAGAAGGCCAATACGTTCTGCT
CGCCCGCCTGCGTGCATGAACACCGGCTTCGCACGAGCGGCTCCTACGTG
AGGAAATGTCTGCTGGTACGTGACAAGGGACGGTGCGCCCTGTGTGCGAT
CGACGCGCATGCCCTCTACTTGCATGTGCGGCGGACCTGCTGGGCAGCTG
GGTGGGGAGGAAAGGGGGAAAAGGCTTTGGGAGGGATTCAGGCGGTGGTG
GACGAAAAAGTGGCGGGCACGATATTGGAGGGCAAGGTGAAAGTCCGAGG
GCTGAAACAAGGCAAGTGTCAGGTCGGCGATGGCGTCGGCAAAGCTTGGG
TCACGTCCACCGTCTACGGGGCCCAAACGAGGCCACGCCCCCGGCGACCT
CGCCGTCCTTTCAATAGCGGGCTTTTCTGGCACGCCGACCACATCCTTCC
AGTCGTGGAAGGAGGGGGCTTGCGAGGCTTGGAGAATTTTAGGACCCTGT
GCGTGGCTTGTCACCAGACGGCCACAGCGGAGCTGCGACGCAGGCGGCAA
GGAGAGATAGCTGGAGGGAGAAATGCAGGGTCGAAGGAGCGCCTGAATAG
CCAGGCGGGGAGTGAAAGGAGGGAAGAGGACAAAGAGGCGGAGGAGGACG
GAGAGAAGGAAACGGAGGATTTGGAGGATGAGGATGCGAAAGATGAAGGA
GAAGGAGGAGCTCAGAAAACAGGCAAAGGTGATTGTGTAGAGATCAAACA
ACAAAAATAAAGGAATACGAAGGCTTGGCTGATAGAGTGGGAGATCAAAA
TGAAGCGTAGAGTACAAATAGAGGTTGGGAAGGGATAGCTTTGGTTGTAA
AAATGTAAAACGTGTATCTAACTCCCAAAACTGTGGAAAAAATCCCTGAT
CTGGTTGTCAGCATTTCGCTATCTTTTCAGTACCTGGTGTTGGCACGGGG
GCACTGTGTTTTCACTGTCATTGTCGATATTTGTCGGTACACTACTGTCG
CCTCAAG back to topprotein sequence of rna635 >rna635-protein ID=rna635-protein|Name=rna635|organism=Nannochloropsis gaditana|type=polypeptide|length=380bp
MLSFFPAYDTGSIENMDVIHVAIARGDVSRVQALCEAEPDLLYLDDWQAR
TPLILSVLADSLPLVRFFVEEVAPEAQATVDERTAPDGNTALFYACRDGR
IEIAEYLLKRGKADPFQKNRYNTTLFMIAAASAPSTCAENKEGKGPSASG
VILSLLEAINRRGGGGREGHLYDCLNACNSNNKTALALACERGALDIISV
LIAAGANPYLLPAGKEEVFKSSTDGDPSKKEILVSCIQVARRAPERVYFM
SKIRCLADTMHALRKSTEAKESLTAEAIAEVSECDGEEGQQDVPIQNIKT
RYDQELQHYQMKKSMAIASEVLKRRVEGKTEIPRVLLTTEGDERLREVAR
HVLIEGGLKLELFVELMEGLVVPQWFYDHL back to topmRNA from alignment at CM002456.1:50288..51493+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna635 ID=rna635|Name=rna635|organism=Nannochloropsis gaditana|type=mRNA|length=1206bp|location=Sequence derived from alignment at CM002456.1:50288..51493+ (Nannochloropsis gaditana)
AGTCACGCCAATgttgtctttttttcctgcgTATGACACAGGGAGCATTG
AAAATATGGACGTCATCCATGTTGCCATTGCGCGTGGAGACGTTTCCCGT
GTGCAGGCCTTGTGCGAGGCAGAGCCCgacctcctctacctcgaCGATTG
GCAGGCTCGGACCCCCTTGATCCTCAGCGTGCTAGCTGACAGCCTTCCCC
TGGTGCGTTTTTTTGTTGAAGAGGTGGCGCCGGAGGCGCAAGCCACAGTG
GACGAGCGCACTGCGCCTGATGGGAATACGGCCTTGTTTTACGCTTGTCG
AGACGGACGGATTGAGATAGCTGAGTACTTGCTGAAGCGGGGTAAAGCAG
ATCCATTCCAAAAAAATAGATACAACACAACATTATTTATGATAGCTGCA
GCCTCAGCCCCGTCTACATGTGCCGAaaacaaggagggcaagggtcCTAG
TGCAAGCGGTGTCATACTTTCTTTGCTTGAGGCCATCAAtcgccgtggag
gagggggacgggagggacaTCTGTACGATTGCTTGAATGCGTGtaacagc
aacaacaagaCAGCGTTGGCATTAGCATGCGAGCGAGGGGCACTGGACAT
CATCTCGGTCTTGATCGCCGCGGGGGCAAATCCCTACTTGTTGCCTGCGG
GTAAAGAGGAAGTTTTCAAGTCAAGCACGGATGGCGACCCTTCCAAGAAA
GAAATCCTCGTGTCCTGCATACAGGTGGCACGACGAGCCCCTGAACGAGT
TTATTTCATGTCGAAAATTCGGTGTCTGGCAGACACGATGCATGCCTTGA
GAAAATCCACAGAGGCGAAGGAGTCTTTGACGGCCGAAGCAATAGCGGAG
GTCTCAGAATGTGAtggtgaggagggacagcAGGATGTTCCTATCCAAAA
TATAAAAACTCGGTATGATCAAGAGCTTCAACATTATCAAATGAAGAAAT
CCatggccatcgcctccgaGGTACTCAAGCGTcgagtggaggggaagacg
gagatTCCACGCGTGCTATTGACCACGGAAGGGGACGAAAGGCTGCGAGA
GGTGGCACGTCATGTGCTCATTGAAGGTGGATTGAAATTGGAGCTATTCG
TAGAACTAATGGAAGGACTAGTCGTTCCTCAATGGTTCTATGACCACTTG
TAGTGATGCAGTCCTCAACATTTGTACAAACTGGAAATATACCCATTCAT
GCTTTT back to topCoding sequence (CDS) from alignment at CM002456.1:50288..51493+ >rna635 ID=rna635|Name=rna635|organism=Nannochloropsis gaditana|type=CDS|length=1143bp|location=Sequence derived from alignment at CM002456.1:50288..51493+ (Nannochloropsis gaditana)
ATgttgtctttttttcctgcgTATGACACAGGGAGCATTGAAAATATGGA
CGTCATCCATGTTGCCATTGCGCGTGGAGACGTTTCCCGTGTGCAGGCCT
TGTGCGAGGCAGAGCCCgacctcctctacctcgaCGATTGGCAGGCTCGG
ACCCCCTTGATCCTCAGCGTGCTAGCTGACAGCCTTCCCCTGGTGCGTTT
TTTTGTTGAAGAGGTGGCGCCGGAGGCGCAAGCCACAGTGGACGAGCGCA
CTGCGCCTGATGGGAATACGGCCTTGTTTTACGCTTGTCGAGACGGACGG
ATTGAGATAGCTGAGTACTTGCTGAAGCGGGGTAAAGCAGATCCATTCCA
AAAAAATAGATACAACACAACATTATTTATGATAGCTGCAGCCTCAGCCC
CGTCTACATGTGCCGAaaacaaggagggcaagggtcCTAGTGCAAGCGGT
GTCATACTTTCTTTGCTTGAGGCCATCAAtcgccgtggaggagggggacg
ggagggacaTCTGTACGATTGCTTGAATGCGTGtaacagcaacaacaaga
CAGCGTTGGCATTAGCATGCGAGCGAGGGGCACTGGACATCATCTCGGTC
TTGATCGCCGCGGGGGCAAATCCCTACTTGTTGCCTGCGGGTAAAGAGGA
AGTTTTCAAGTCAAGCACGGATGGCGACCCTTCCAAGAAAGAAATCCTCG
TGTCCTGCATACAGGTGGCACGACGAGCCCCTGAACGAGTTTATTTCATG
TCGAAAATTCGGTGTCTGGCAGACACGATGCATGCCTTGAGAAAATCCAC
AGAGGCGAAGGAGTCTTTGACGGCCGAAGCAATAGCGGAGGTCTCAGAAT
GTGAtggtgaggagggacagcAGGATGTTCCTATCCAAAATATAAAAACT
CGGTATGATCAAGAGCTTCAACATTATCAAATGAAGAAATCCatggccat
cgcctccgaGGTACTCAAGCGTcgagtggaggggaagacggagatTCCAC
GCGTGCTATTGACCACGGAAGGGGACGAAAGGCTGCGAGAGGTGGCACGT
CATGTGCTCATTGAAGGTGGATTGAAATTGGAGCTATTCGTAGAACTAAT
GGAAGGACTAGTCGTTCCTCAATGGTTCTATGACCACTTGTAG back to top
|