EWM30041.1, cds635 (CDS) Nannochloropsis gaditana

Overview
NameEWM30041.1
Unique Namecds635
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:50298..51440 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30041.1
Productankyrin repeat protein
Orig transcript idgnl|cribi|Naga_100179g8.5429.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:50298..51440 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Homology
BLAST of EWM30041.1 vs. NCBI_GenBank
Match: gi|585112669|gb|EWM30041.1| (ankyrin repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 783.097 bits (2021), Expect = 0.000e+0
Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 0
Query:    1 MLSFFPAYDTGSIENMDVIHVAIARGDVSRVQALCEAEPDLLYLDDWQARTPLILSVLADSLPLVRFFVEEVAPEAQATVDERTAPDGNTALFYACRDGRIEIAEYLLKRGKADPFQKNRYNTTLFMIAAASAPSTCAENKEGKGPSASGVILSLLEAINRRGGGGREGHLYDCLNACNSNNKTALALACERGALDIISVLIAAGANPYLLPAGKEEVFKSSTDGDPSKKEILVSCIQVARRAPERVYFMSKIRCLADTMHALRKSTEAKESLTAEAIAEVSECDGEEGQQDVPIQNIKTRYDQELQHYQMKKSMAIASEVLKRRVEGKTEIPRVLLTTEGDERLREVARHVLIEGGLKLELFVELMEGLVVPQWFYDHL 380
            MLSFFPAYDTGSIENMDVIHVAIARGDVSRVQALCEAEPDLLYLDDWQARTPLILSVLADSLPLVRFFVEEVAPEAQATVDERTAPDGNTALFYACRDGRIEIAEYLLKRGKADPFQKNRYNTTLFMIAAASAPSTCAENKEGKGPSASGVILSLLEAINRRGGGGREGHLYDCLNACNSNNKTALALACERGALDIISVLIAAGANPYLLPAGKEEVFKSSTDGDPSKKEILVSCIQVARRAPERVYFMSKIRCLADTMHALRKSTEAKESLTAEAIAEVSECDGEEGQQDVPIQNIKTRYDQELQHYQMKKSMAIASEVLKRRVEGKTEIPRVLLTTEGDERLREVARHVLIEGGLKLELFVELMEGLVVPQWFYDHL
Sbjct:    1 MLSFFPAYDTGSIENMDVIHVAIARGDVSRVQALCEAEPDLLYLDDWQARTPLILSVLADSLPLVRFFVEEVAPEAQATVDERTAPDGNTALFYACRDGRIEIAEYLLKRGKADPFQKNRYNTTLFMIAAASAPSTCAENKEGKGPSASGVILSLLEAINRRGGGGREGHLYDCLNACNSNNKTALALACERGALDIISVLIAAGANPYLLPAGKEEVFKSSTDGDPSKKEILVSCIQVARRAPERVYFMSKIRCLADTMHALRKSTEAKESLTAEAIAEVSECDGEEGQQDVPIQNIKTRYDQELQHYQMKKSMAIASEVLKRRVEGKTEIPRVLLTTEGDERLREVARHVLIEGGLKLELFVELMEGLVVPQWFYDHL 380          
BLAST of EWM30041.1 vs. NCBI_GenBank
Match: gi|1057230478|ref|WP_068602224.1| (ankyrin repeat domain-containing protein [Tamlana sp. s12] >gi|1039216009|gb|OBQ56566.1| ankyrin [Tamlana sp. s12])

HSP 1 Score: 64.6994 bits (156), Expect = 6.188e-9
Identity = 44/133 (33.08%), Postives = 66/133 (49.62%), Query Frame = 0
Query:   13 IENMDVIHVAIARGDVSRVQALCEAEPDLLYLDDWQARTPLILSVLADSLPLVRFFVEEVAPEAQATVDERTAPDGNTALFYACRDGRIEIAEYLLKRGKADPFQKNRYNTTLFMIAAASAPSTCAENKEGKG 145
            +EN++     I  GD+  V++L   +P+L++  D +  TPLIL+   D   L +  +++ AP     +D R A  GNTAL         E+AEYLL  G AD   KN +  T  + A+    S   +   GKG
Sbjct:    1 MENVETFFSKIQSGDLEAVKSLINDQPELIHATDARGFTPLILASYFDKNDLAKVLIDKNAP-----IDARDAM-GNTALIGVAFKDNQEVAEYLLTHG-ADINAKNNHGVTALIFASMYDKSNMVKFLLGKG 126          
BLAST of EWM30041.1 vs. NCBI_GenBank
Match: gi|1055487097|ref|WP_067146169.1| (ankyrin repeat domain-containing protein [Tamlana agarivorans])

HSP 1 Score: 62.7734 bits (151), Expect = 3.033e-8
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = 0
Query:   13 IENMDVIHVAIARGDVSRVQALCEAEPDLLYLDDWQARTPLILSVLADSLPLVRFFVEEVAPEAQATVDERTAPDGNTALFYACRDGRIEIAEYLLKRGKADPFQKNRYNTTLFMIAA 130
            +EN++     I  GD+  V++L + +P+L++  D +  TPLIL+   D   L +  +++ AP     VD R A  GNTAL         E+AEYLL  G AD   KN +  T  + A+
Sbjct:    1 MENVETFFSKIQSGDLITVKSLIDNQPELIHATDARGFTPLILASYFDKNDLAKVLIDKNAP-----VDARDAM-GNTALIGVAFKDNQEVAEYLLTHG-ADINAKNNHGVTALIFAS 111          
BLAST of EWM30041.1 vs. NCBI_GenBank
Match: gi|1097739890|emb|SFU58199.1| (hypothetical protein SAMN05216480_10899 [Pustulibacterium marinum])

HSP 1 Score: 61.2326 bits (147), Expect = 1.132e-7
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 0
Query:   22 AIARGDVSRVQALCEAEPDLLYLDDWQARTPLILSVLADSLPLVRFFVEEVAPEAQATVDERTAPDGNTALFYACRDGRIEIAEYLLKRGKADPFQKNRYNTTLFMIAA 130
            AI  GDV +V  L + +P+L+ + D +  TPLIL+   D L +V+  VE       A VD + A  GNTA+  AC  G  ++  YL+ +G A+  + N    T  + AA
Sbjct:   12 AIRNGDVEKVANLVDVQPELVNVRDQRGSTPLILAAYYDQLGVVKVLVEN-----GADVDAKDAS-GNTAMMGACFKGYKDVVAYLIDKG-ANVNETNSNGATALVYAA 113          
BLAST of EWM30041.1 vs. NCBI_GenBank
Match: gi|909610271|gb|KNF00532.1| (hypothetical protein PSTG_06224 [Puccinia striiformis f. sp. tritici PST-78])

HSP 1 Score: 60.8474 bits (146), Expect = 6.106e-7
Identity = 74/246 (30.08%), Postives = 98/246 (39.84%), Query Frame = 0
Query:   19 IHVAIARGDVSRVQALCEAEPDLLYLDDWQARTPLILSVLADSLPLVRFFVEEVAPE-----------------AQATVDERTA-------------PDGNTALFYACRDGRIEIAEYLLKRGKADPFQKNRYNTTLFMIAAASAPSTCAENKEGKGPSASGVILSLLEAINRRGGGGREGHLYDCLNACNSNNKTALALACERGALDIISVLIAAGAN-PYLLPAGKEEVFKSSTDGDPSKKEIL 233
            IH +   G    V A    +P+ +   D   RTPL  +  + SL +VR  +E+  P+                 A A + E  +               G TAL YA   GR+EI   LL+ G AD   K+R N      AA+S               A+  I  LLE+ N     G E      LN  ++   TAL LA E G  +   VLI AGAN   L P GK     +   GD ++K IL
Sbjct:    5 IHRSAYEGQAQLVSAALAEDPNRINALDSDGRTPLHTASSSGSLSVVRVLLEQQEPKCDIEIQDAMGWTALIIAASAGITEVVSELIHAGANVNAVNQKGQTALHYAASKGRLEIGRLLLQYG-ADVNAKDRANQLPLHRAASSG--------------ATPFIKLLLESANSNEEKGTE-RPKAKLNVIDNAGHTALHLAFESGHAETACVLIEAGANRERLDPDGKRPDQLTEVLGDVAQKRIL 234          
The following BLAST results are available for this feature:
BLAST of EWM30041.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585112669|gb|EWM30041.1|0.000e+0100.00ankyrin repeat protein [Nannochloropsis gaditana][more]
gi|1057230478|ref|WP_068602224.1|6.188e-933.08ankyrin repeat domain-containing protein [Tamlana ... [more]
gi|1055487097|ref|WP_067146169.1|3.033e-834.75ankyrin repeat domain-containing protein [Tamlana ... [more]
gi|1097739890|emb|SFU58199.1|1.132e-735.78hypothetical protein SAMN05216480_10899 [Pustuliba... [more]
gi|909610271|gb|KNF00532.1|6.106e-730.08hypothetical protein PSTG_06224 [Puccinia striifor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna635rna635Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications