|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100105g11.10584.mrna |
| Orig protein id | gnl|cribi|Naga_100105g11.10584 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:305105..306304 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6347 ID=rna6347|Name=rna6347|organism=Nannochloropsis gaditana|type=mRNA|length=1324bp
TTTTTATCTTGTCACATCACGCCAAACGACAAATCAAAAAGAAATCTTAT
GCAGACAAATCCTTTCGTTTTAAACAGGTTAAAGATATTTTACGATAAGT
ATCTGCCTTTCGTCGCGACCATTTCCTTTGTGTCTCCCTGTCCGTCAGAG
GCGGAAGAGGAAAGGAGAGGCTTGGGAGCCTGCTTTATTGCACAAAGCAC
AGGACTGTACCCGCTACTGCGAGCAACGCAGGGCTCTGCGAGGCTAGAAG
CTACTCCGAATTCTTCGTGGGGGTGGAAAGCATGGCGTACGTGATAAAAA
CAGAGGACCATTCCGCCCCCGGCTTTCGGTGGGTGTCCTTGAAACGGCTT
CAGTATTGCGACGCCAGAGGCCGCAAGCGGACGTGGGAAATGGCGGAGCG
GATCCAACGCCGCACTGCCTCAGAGGGCCCCCCACCTGCGAACGGGGTTG
GTATCGTCGCGATCATCTCAACCTCATTTGCGAAGGATAACGATCACATT
GTTTTAGTCTCACAGTTTCGACCCCCTGTGGGAAAGGAGGTGCTGGAGCT
GCCAGCGGGGCTTGTGGACGACGGGGAGGATGAAACGACCTCCGCCATTC
GCGAGCTCCGGGAAGAAACCGGATTCGAGGGTATGGTCACGCATGTGTCC
CCAATAGTGTACTCGGACCCAGGATTGAGCAACGCTTCGATGCGCTACGT
GTTCATGCGGATCGACGGCGACTTAGGGAGCAACCAGCAGCCCGTAGCCA
TGCCAGACGAGGATGAGATCATCACCGTCCACCGGGTGCCGGTGAAGAGA
CTATTGAATGAGGTCGAAGGCTTCCGGGAGCAGGGCTTTGAGATCGATGC
CCGCCTCTACGGCCTGGCCTTGGGTCTGCAGTTCGGAGACGTGAAGCAAT
ATGCACCCCCCGGAGCTTCCTCTTCCTCTTGGCGCTGGACTCTGGCCTCA
GGGATAGCTGCCCTGTTGCTCTACCGTTATATCCGCGGGGCTGGGAGATA
GTTTTCGAGGGGGGGAGGATGGGAGACGAGGAAGAGGGCTCTTCCGTGGG
GGCGGGCAGGGGATAAAGGCGTGGGAATCGCCCTGGACTGAAGGTAGAGT
CGCGGAGATTGAGGAGGCGGGAGGGTGGGTGAGCAGTGACGGAGTGGGCC
CGGTCTTCGCGAGCCGACGCCATGCACTCAAAACTGAAGGCCTCGAATTC
GTGGAGCATGCGAGATGCAAGCAGCGAGCCATCAGGCAAAAAAAAACTCT
GAGATTGATGAGACTGAAGAGGATAAAAATATTGACAAATGAAGAGCCCG
CTTGCACAAGCAGAGCATGCTTGC back to topprotein sequence of rna6347 >rna6347-protein ID=rna6347-protein|Name=rna6347|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MSISTNPVGKVWVENMFLWLAPLLLFIYKMLYEYLPAPAFIACLVIPALY
VYRVTKELSPVEAADEMSAKERMAEEMLEELTKEEEVNESKKKKDKNDGK
HKKKLQGGGGKSATSAGGTSKGKRQSTGGDEDDEDDMLTRMAQQRAKKAV
R back to topmRNA from alignment at CM002468.1:305105..306304- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6347 ID=rna6347|Name=rna6347|organism=Nannochloropsis gaditana|type=mRNA|length=1200bp|location=Sequence derived from alignment at CM002468.1:305105..306304- (Nannochloropsis gaditana)
AGTTGGCGGCCACGGGCCCTCTCGTCCACACTTACCAAACCATGCAGGGT
AGAAGTAGAGCCATTCTTTTGCACGTGATCTACGGACCTTGATCATTCTT
GAAGTTCTTGTACCTCTGCAACAATATCACCCAGTCGTTCCGTGGGGGCT
GTCTTCTTCATTCGATGACGGTAGTCGTCTTCAGTAGCCCCACTAATCTG
GTCATTTTTCAATCCCGATCTCTTTCTGCTTCAACGTTTGGAATTAGACT
TGTGCTTGAAGCGTGCCAAGAAACAAGCTTGACATGAGTATCAGCACAAA
TCCCGTCGGGAAAGTATGGGTGGAGAACATGTTTCTGTGGCTTGCCCCGC
TCCTTCTCTTCATCTATAAGGTATGTGCTGTGCACTCTACTAAGTATAGT
TTTTCCTTTCGTTGCACCCCATCGTATCATGTAATTCATCCCTGATGCTT
GTAATGGATAATGGATTTAACATGTAATAGGACATTTTTGTCTGTTTCAA
TTGACATTTTTCTGCTGATGATCGACCAAACCCTCCGTCCTCTGCCTTGC
ACTCGTTTTGTAACAGATGCTGTACGAATACCTTCCTGCTCCTGCCTTCA
TCGCATGCCTCGTAATTCCCGCCTTATACGTCTACCGCGTAACAAAGGAG
CTCAGTCCCGTGGAAGCTGCTGATGAGATGAGCGCTAAGGAACGGATGGC
GGAAGAGATGCTTGAGGAGCTCACGAAGGAGGAGGAGGTGAATGAGAGTA
AAAAGAAGGTAAATGCTTGCAAATCCAAAAAAGCCATGTCGGATCACATA
ATCTCGTAGCATTCTGACTTAAAGGACTTTCCCGCCTATATCCCCACAGA
AAGATAAAAACGATGGGAAGCACAAGAAGAAGCTGCAAGGAGGAGGGGGA
AAGTCTGCAACGAGCGCGGGCGGAACATCGAAAGGAAAGCGTCAATCTAC
CGGAGGAGATGAAGATGACGAGGATGACATGCTCACTCGCATGGCCCAGC
AACGGGCGAAGAAGGCAGTGAGATAATCGAGGCAACGAGCCGTTGCGGAT
TCGCGAGGAATCTCCATGGATCTTACCGCGTCGTTTCAAATCTCACGCTG
GCGGGTAGCAAATCAACGATCTTTTTAAGTAGATTAAATCGAGCATGCAA
GCATGCTCTGCTTGTGCAAGCGGGCTCTTCATTTGTCAATATTTTTATCC
back to topCoding sequence (CDS) from alignment at CM002468.1:305105..306304- >rna6347 ID=rna6347|Name=rna6347|organism=Nannochloropsis gaditana|type=CDS|length=1368bp|location=Sequence derived from alignment at CM002468.1:305105..306304- (Nannochloropsis gaditana)
AAAGATAAAAACGATGGGAAGCACAAGAAGAAGCTGCAAGGAGGAGGGGG
AAAGTCTGCAACGAGCGCGGGCGGAACATCGAAAGGAAAGCGTCAATCTA
CCGGAGGAGATGAAGATGACGAGGATGACATGCTCACTCGCATGGCCCAG
CAACGGGCGAAGAAGGCAGTGAGATAAATGCTGTACGAATACCTTCCTGC
TCCTGCCTTCATCGCATGCCTCGTAATTCCCGCCTTATACGTCTACCGCG
TAACAAAGGAGCTCAGTCCCGTGGAAGCTGCTGATGAGATGAGCGCTAAG
GAACGGATGGCGGAAGAGATGCTTGAGGAGCTCACGAAGGAGGAGGAGGT
GAATGAGAGTAAAAAGAAGATGAGTATCAGCACAAATCCCGTCGGGAAAG
TATGGGTGGAGAACATGTTTCTGTGGCTTGCCCCGCTCCTTCTCTTCATC
TATAAGAAAGATAAAAACGATGGGAAGCACAAGAAGAAGCTGCAAGGAGG
AGGGGGAAAGTCTGCAACGAGCGCGGGCGGAACATCGAAAGGAAAGCGTC
AATCTACCGGAGGAGATGAAGATGACGAGGATGACATGCTCACTCGCATG
GCCCAGCAACGGGCGAAGAAGGCAGTGAGATAAATGCTGTACGAATACCT
TCCTGCTCCTGCCTTCATCGCATGCCTCGTAATTCCCGCCTTATACGTCT
ACCGCGTAACAAAGGAGCTCAGTCCCGTGGAAGCTGCTGATGAGATGAGC
GCTAAGGAACGGATGGCGGAAGAGATGCTTGAGGAGCTCACGAAGGAGGA
GGAGGTGAATGAGAGTAAAAAGAAGATGAGTATCAGCACAAATCCCGTCG
GGAAAGTATGGGTGGAGAACATGTTTCTGTGGCTTGCCCCGCTCCTTCTC
TTCATCTATAAGAAAGATAAAAACGATGGGAAGCACAAGAAGAAGCTGCA
AGGAGGAGGGGGAAAGTCTGCAACGAGCGCGGGCGGAACATCGAAAGGAA
AGCGTCAATCTACCGGAGGAGATGAAGATGACGAGGATGACATGCTCACT
CGCATGGCCCAGCAACGGGCGAAGAAGGCAGTGAGATAAATGCTGTACGA
ATACCTTCCTGCTCCTGCCTTCATCGCATGCCTCGTAATTCCCGCCTTAT
ACGTCTACCGCGTAACAAAGGAGCTCAGTCCCGTGGAAGCTGCTGATGAG
ATGAGCGCTAAGGAACGGATGGCGGAAGAGATGCTTGAGGAGCTCACGAA
GGAGGAGGAGGTGAATGAGAGTAAAAAGAAGATGAGTATCAGCACAAATC
CCGTCGGGAAAGTATGGGTGGAGAACATGTTTCTGTGGCTTGCCCCGCTC
CTTCTCTTCATCTATAAG back to top
|