rna6346, rna6346 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6346
Unique Name	rna6346
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1914
Alignment location	CM002468.1:303213..305158 +

Link to JBrowse

Properties


Property Name	Value
Product	adp-ribose pyrophosphatase
Orig transcript id	gnl\|cribi\|Naga_100105g12.10570.mrna
Orig protein id	gnl\|cribi\|Naga_100105g12.10570
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:303213..305158 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100105g12	gene6133	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6346	rna6346-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24331.1	cds6331	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:303213..305158+
coding sequence from alignment at CM002468.1:303213..305158+

mRNA sequence

>rna6346 ID=rna6346|Name=rna6346|organism=Nannochloropsis gaditana|type=mRNA|length=1914bp
TGGACTGGGAGGATGGGAATGCCCGGCGTTGCATCCATCTCCTCCAGGCC
ATGGCTGATACCCACCCCATCGGTAGTATCCTTGGATGCCCGACATGCTC
ACCTCTTTTACACGCACATTCGCCCTCATTCACGGTGTGTATGTACCTAT
ACAGGATTTTTATCTTGTATTTATTTTAGTGCAACATTTCTCTGGAGTCA
TGGCCATCCAAGATGAGAGTTTTCTACGGCGACGGCTGGCGGAGAATAAT
GCCTATTTCAGCCGCATGGTTAACTTGGTTCCTGCGGAGCTGTACTTACC
CAAAGACGACAACAACAACGGCGAGGCTAATGCGAAATATTTTAAGAACA
AGCGGCAAGCTGCACCCAAGCAATTGAAAAAGGAGGAATCGAAACGAGGG
AAGAAGATGAAATTTGATCCTGCCAACATGAAGACGGTGACGGAGCTTCA
GACAGAGAGGGCGGCTAAAGAGAAGGAAGAGAAGGAGCGAAGTAAAAGGA
TGCGAGAAGATGCAAATGAGGTGGGGGAGGGGGAGGTGGAGGACAGTGAG
GATGAAAACGATGGTGACAGTGACGGAGTTTTGGAGGAGAGCGAGGAGGA
GGGAGAGGAGGAAGAGGAAGAGGAGGAGGAGGACGACGATGCTGGCGATC
AAAAACATGAGAAGGGAGGGACTTTGCCGAAGGAAGCAAGGGATGCTTCA
AAACCTTCAGGGCGAAAAGGAGGAGGCAACGAAGAGGAAAAGGCGGAAGA
AATCGGTGGCGGGGGCAACAATTTCAAAAAAGCGAAGGAATCGGGCCAGG
GGTCGACGACCCGTGGGCCTCTGTCTTTGGTCGGTACCACACCACGGGCT
AAGTCTATCGAGGAGCTCCGAGAACGTCTGCGGGTAAGGAGGGAGGGAAG
GGGGGAGGAGGATTGACGTATTAGGGGCCCTGAGCAAGGGGCGGTTGCTG
ATAAAAGCGCGTTCACTTACCTTTTTTCAATTTCAACTTTGTAGCTCAAA
ATTGAGGAGGCGCGGGCAAAACGCGGAGGTGTCAGTGAAGGTGGAAACCG
TCGAAGTGCCAAGAACAGCAGAGCTGCGACAGCTGCTGCCAATTTGAACC
AGAATAAGCGAAAGAAAGGGCAGCTCGCGTCGCTTCCTTCCTCCTCTCCG
ACAACCTCACCTGCTGCTGCAGCAGTAGCGGTGGGTCTGAGCAGTGGGAG
CAGTCATCAAAATGACGCCTCTGTAGATATTCAGTTTGGTAAGATTGCCG
TTCCTACTCCAGTAGCTTCTCGGAACTTGAAAAAGGGTGGTAAGAACCTT
GTGGGGTTGCTGAAGAAGGCTGAGGAGAAGGAGAAACGCTTGAAGGAGTT
GCAGGCGACCGAGGGAGGAAAAGAAGAGGCATCCGCATTACTCTGGAAGG
ATGCATTGAAAAGCGCGCACGGAGAAAAGATCCTGGATAATCCAAAGCTG
TTAAAGAAGGCGATCAAGAAGAAGGAAAAAGCCAAGGCAAAAAGTAAAGA
GAAATGGGGAGATAGGACCGCAAAAATTGAAGCGGCAGAGAGGGAAAAAC
AAGGGAGACGAGAGGCCAATTTGAAGAAAAGAAAGTTGGGAGGTGTTGAA
GGCTGTCTAGCTGGGTCCAAGGCGGAGAAGGACAACAAAGAGAAGAGCGG
GGGACGGCAAGGTCGGGCAGGCTTTGAAGGAAAAAGGGCAGAATTTTTAA
ATAAAGGTGCTGGGAAGAAGAGGAATGAGCAATTTGATGGAGAAACGCAT
TTAAATAAAAAAAGAGAGGCCGGTGGTGGAAGTGCAAGCAGAAAGGGACA
AGCATTGAACAGCGGTGGAGCTGGAAAAGGTCATAACCATCATCAGTAGA
AAGAATGCGTGTTGGTCGTACAGGACAAAGTAATTCAGAAACAATTATTT
ATTAAACGGGAAAA

protein sequence of rna6346

>rna6346-protein ID=rna6346-protein|Name=rna6346|organism=Nannochloropsis gaditana|type=polypeptide|length=239bp
MAYVIKTEDHSAPGFRWVSLKRLQYCDARGRKRTWEMAERIQRRTASEGP
PPANGVGIVAIISTSFAKDNDHIVLVSQFRPPVGKEVLELPAGLVDDGED
ETTSAIRELREETGFEGMVTHVSPIVYSDPGLSNASMRYVFMRIDGDLGS
NQQPVAMPDEDEIITVHRVPVKRLLNEVEGFREQGFEIDARLYGLALGLQ
FGDVKQYAPPGASSSSWRWTLASGIAALLLYRYIRGAGR

mRNA from alignment at CM002468.1:303213..305158+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6346 ID=rna6346|Name=rna6346|organism=Nannochloropsis gaditana|type=mRNA|length=1946bp|location=Sequence derived from alignment at CM002468.1:303213..305158+ (Nannochloropsis gaditana)
TTTTTATCTTGTCACATCACGCCAAACGACAAATCAAAAAGAAATCTTAT
GCAGACAAATCCTTTCGTTTTAAACAGGTTAAAGATATTTTACGATAAGT
ATCTGCCTTTCGTCGCGACCATTTCCTTTGTGTCTCCCTGTCCGTcagag
gcggaagaggaaaggagaggcttGGGAGCCTGCTTTATTGCACAAAGCAC
AGGACTGTACCCGCTACTGCGAGCAACGCAGGGCTCTGCGAGGCTAGAAG
CTACTCCGAATTCTTCGTGGGGGTGGAAAGCATGGCGTACGTGATAAAAA
CAGAGGACCATTCCGCCCCCGGCTTTCGGTGGGTGTCCTTGAAACGGCTT
CAGTATTGCGACGCCAGAGGCCGCAAGCGGACGTGGGAAATGGCGGAGCG
GATCCAACGCCGCACTGCCTCAGAGGGCCCCCCACCTGCGAACGGGGTTG
GTATCGTCGCGATCATCTCAACCTCATTTGCGAAGGATAACGATCACATT
GTTTTAGGTATGAGTAGATAGCCGAGTGTCTCTTGGCAGCAAGCTGGATT
TAATCTGTGGCTGCGGGATCAAAGGACGATTAAGAAAGGCTTCTCTCATA
TATTTGCACCATTTCCTTGCCTCCGAActcatccctctcccacccccccc
aaGTCTCACAGTTTCGACCCCctgtgggaaaggaggtgctggagctgcCA
GCGGGGCTTgtggacgacggggaggtagggattTTGGAGGATAACGATAG
CCTCATGGGATTTGAATAGCAACACGCGGATCTATATAGCGGCAATGCCC
GAAAGAGAGACCTAAGAGACCGTCTTTGCATGCTCTCTCCCCGCAATGTT
CCCTGGCCCCTCCACGTTCTCCCTCCAGGATGAAACGACCTCCGCCATTC
GCGAGCTCCGGGAAGAAACCGGATTCGAGGGTATGGTCACGCATGTGTCC
CCAATAGTGTACTCGGACCCAGGATTGAGCAACGCTTCGATGCGCTACGT
GTTCATGCGGATCGACGGCGACTTAGGGAGCAACCAGCAGCCCGTAGCCA
TGCCAGACGAGGATGAGATCATCACCGTCCACCGGGTGCCGGTGAAGAGG
TACGGGCGTCGCTTTAGGTCAGGTGTGGATTGTCTTTTGCGCTTGTTGCG
GGGGTCTTGAAGCTTAACGTACAAGGGTGGTCATCTTTGGGGAGGCTGTC
ATGTCTGCGTATCGATCAGTAGGCAATGTGTTTTCAGATACGGGGCTGCT
AGCTCGCGCTGGTTCGGGCGGTAAGGGCaatggggaaagaggcgcaCGCC
TATGTGCAGCCAGGGTTCTGGGTGCATGCATACATAGGGCTGCTTTTGCC
GGACCTTCCCACTCTGGGAGAGAAGATTCACACTCATAGACCCTGCAATC
TTGACCTCTTTACCCCACCAGACTATTGAATGAGGTCGAAGGCTTCCGGG
AGCAGGGCTTTGAGATCGATGCCCGCCTCTACGGCCTGGCCTTGGGTCTG
CAGTTCGGAGACGTGAAGCAATATGCACCCCCCGgagcttcctcttcctc
ttggcgCTGGACTCTGGCCTCAGGGATAGCTGCCCTGTTGCTCTACCGTT
ATATCCGCGGGGCTGGGAGATAGTTttcgagggggggaggatgggagacg
aggaagagggctcTTCcgtgggggcgggcaggggatAAAGGCGTGGGAAT
CGCCCTGGACTGAAGGTAGAGTCGCGGAGAttgaggaggcgggagggtgg
gtgAGCAGTGACGGAGTGGGCCCGGTCTTCGCGAGCCGACGCCATGCACT
CAAAACTGAAGGCCTCGAATTCGTGGAGCATGCGAGATGCAAGCAGCGAG
CCATCAGGCAAAAAAAAACTCTGAGATTGATGAGACTGAAGAGGATAAAA
ATATTGACAAATGAAGAGCCCGCTTGCACAAGCAGAGCATGCTTGC

Coding sequence (CDS) from alignment at CM002468.1:303213..305158+

>rna6346 ID=rna6346|Name=rna6346|organism=Nannochloropsis gaditana|type=CDS|length=2880bp|location=Sequence derived from alignment at CM002468.1:303213..305158+ (Nannochloropsis gaditana)
ATGGCGTACGTGATAAAAACAGAGGACCATTCCGCCCCCGGCTTTCGGTG
GGTGTCCTTGAAACGGCTTCAGTATTGCGACGCCAGAGGCCGCAAGCGGA
CGTGGGAAATGGCGGAGCGGATCCAACGCCGCACTGCCTCAGAGGGCCCC
CCACCTGCGAACGGGGTTGGTATCGTCGCGATCATCTCAACCTCATTTGC
GAAGGATAACGATCACATTGTTTTAGTCTCACAGTTTCGACCCCctgtgg
gaaaggaggtgctggagctgcCAGCGGGGCTTgtggacgacggggagGAT
GAAACGACCTCCGCCATTCGCGAGCTCCGGGAAGAAACCGGATTCGAGGG
TATGGTCACGCATGTGTCCCCAATAGTGTACTCGGACCCAGGATTGAGCA
ACGCTTCGATGCGCTACGTGTTCATGCGGATCGACGGCGACTTAGGGAGC
AACCAGCAGCCCGTAGCCATGCCAGACGAGGATGAGATCATCACCGTCCA
CCGGGTGCCGGTGAAGAGACTATTGAATGAGGTCGAAGGCTTCCGGGAGC
AGGGCTTTGAGATCGATGCCCGCCTCTACGGCCTGGCCTTGGGTCTGCAG
TTCGGAGACGTGAAGCAATATGCACCCCCCGgagcttcctcttcctcttg
gcgCTGGACTCTGGCCTCAGGGATAGCTGCCCTGTTGCTCTACCGTTATA
TCCGCGGGGCTGGGAGATAGATGGCGTACGTGATAAAAACAGAGGACCAT
TCCGCCCCCGGCTTTCGGTGGGTGTCCTTGAAACGGCTTCAGTATTGCGA
CGCCAGAGGCCGCAAGCGGACGTGGGAAATGGCGGAGCGGATCCAACGCC
GCACTGCCTCAGAGGGCCCCCCACCTGCGAACGGGGTTGGTATCGTCGCG
ATCATCTCAACCTCATTTGCGAAGGATAACGATCACATTGTTTTAGTCTC
ACAGTTTCGACCCCctgtgggaaaggaggtgctggagctgcCAGCGGGGC
TTgtggacgacggggagGATGAAACGACCTCCGCCATTCGCGAGCTCCGG
GAAGAAACCGGATTCGAGGGTATGGTCACGCATGTGTCCCCAATAGTGTA
CTCGGACCCAGGATTGAGCAACGCTTCGATGCGCTACGTGTTCATGCGGA
TCGACGGCGACTTAGGGAGCAACCAGCAGCCCGTAGCCATGCCAGACGAG
GATGAGATCATCACCGTCCACCGGGTGCCGGTGAAGAGACTATTGAATGA
GGTCGAAGGCTTCCGGGAGCAGGGCTTTGAGATCGATGCCCGCCTCTACG
GCCTGGCCTTGGGTCTGCAGTTCGGAGACGTGAAGCAATATGCACCCCCC
GgagcttcctcttcctcttggcgCTGGACTCTGGCCTCAGGGATAGCTGC
CCTGTTGCTCTACCGTTATATCCGCGGGGCTGGGAGATAGATGGCGTACG
TGATAAAAACAGAGGACCATTCCGCCCCCGGCTTTCGGTGGGTGTCCTTG
AAACGGCTTCAGTATTGCGACGCCAGAGGCCGCAAGCGGACGTGGGAAAT
GGCGGAGCGGATCCAACGCCGCACTGCCTCAGAGGGCCCCCCACCTGCGA
ACGGGGTTGGTATCGTCGCGATCATCTCAACCTCATTTGCGAAGGATAAC
GATCACATTGTTTTAGTCTCACAGTTTCGACCCCctgtgggaaaggaggt
gctggagctgcCAGCGGGGCTTgtggacgacggggagGATGAAACGACCT
CCGCCATTCGCGAGCTCCGGGAAGAAACCGGATTCGAGGGTATGGTCACG
CATGTGTCCCCAATAGTGTACTCGGACCCAGGATTGAGCAACGCTTCGAT
GCGCTACGTGTTCATGCGGATCGACGGCGACTTAGGGAGCAACCAGCAGC
CCGTAGCCATGCCAGACGAGGATGAGATCATCACCGTCCACCGGGTGCCG
GTGAAGAGACTATTGAATGAGGTCGAAGGCTTCCGGGAGCAGGGCTTTGA
GATCGATGCCCGCCTCTACGGCCTGGCCTTGGGTCTGCAGTTCGGAGACG
TGAAGCAATATGCACCCCCCGgagcttcctcttcctcttggcgCTGGACT
CTGGCCTCAGGGATAGCTGCCCTGTTGCTCTACCGTTATATCCGCGGGGC
TGGGAGATAGATGGCGTACGTGATAAAAACAGAGGACCATTCCGCCCCCG
GCTTTCGGTGGGTGTCCTTGAAACGGCTTCAGTATTGCGACGCCAGAGGC
CGCAAGCGGACGTGGGAAATGGCGGAGCGGATCCAACGCCGCACTGCCTC
AGAGGGCCCCCCACCTGCGAACGGGGTTGGTATCGTCGCGATCATCTCAA
CCTCATTTGCGAAGGATAACGATCACATTGTTTTAGTCTCACAGTTTCGA
CCCCctgtgggaaaggaggtgctggagctgcCAGCGGGGCTTgtggacga
cggggagGATGAAACGACCTCCGCCATTCGCGAGCTCCGGGAAGAAACCG
GATTCGAGGGTATGGTCACGCATGTGTCCCCAATAGTGTACTCGGACCCA
GGATTGAGCAACGCTTCGATGCGCTACGTGTTCATGCGGATCGACGGCGA
CTTAGGGAGCAACCAGCAGCCCGTAGCCATGCCAGACGAGGATGAGATCA
TCACCGTCCACCGGGTGCCGGTGAAGAGACTATTGAATGAGGTCGAAGGC
TTCCGGGAGCAGGGCTTTGAGATCGATGCCCGCCTCTACGGCCTGGCCTT
GGGTCTGCAGTTCGGAGACGTGAAGCAATATGCACCCCCCGgagcttcct
cttcctcttggcgCTGGACTCTGGCCTCAGGGATAGCTGCCCTGTTGCTC
TACCGTTATATCCGCGGGGCTGGGAGATAG

Synonyms

Publications