rna6345, rna6345 (mRNA) Nannochloropsis gaditana

Overview
Namerna6345
Unique Namerna6345
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length603
Alignment locationCM002468.1:300610..302876 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100105g13.10578.mrna
Orig protein idgnl|cribi|Naga_100105g13.10578
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:300610..302876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100105g13gene6132Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6345rna6345-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24339.1cds6330Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6345 ID=rna6345|Name=rna6345|organism=Nannochloropsis gaditana|type=mRNA|length=603bp
ATGTGGCCTTTCTCTGTCAACAGCAAATTGTGCGGAGTCACCCGTCGGTG
CCTCATCATTGGTATCGCTTCCGTGCTATTGCCTGTCATTGTAATCGCAT
CTCTAGTAGGCGTCTACTATCCTAAGGCCCCAGAGATCCGAGCAACAACA
ACTGAGATTAATTCTCTCAAGATAAATGGCATGGAATCAGTCTCAGTAGA
TGCCGACGTTGATCTCGAAATTGTGAACAAAAATAAAAATTATCCGATTG
CCTTTGATCCTGTTGAATTAGATTTCTATTTTCCATCGAGTCCTGAATCT
CGGGTGGGTACAGGAGTGCTGGAGGGTGGCGTGATCCCTGGAGGCGAGAC
GACCACGCGTAAGCTGCATGCAGTCTTCGATGCGCCCTGGAGTATGCTTG
GGGCCAGTTTTCTTCGTAACATGAATCAAGGGGCCACCACTTTGTTGGTA
AAGGGGCATGTATTAGGATTCTCCACAATTCTGAAAAGCGATTTCCGTTT
GTCATCCGAGCTAGAATGTATCCTCAGCTACACATGGGACGATCAAAAAA
CACACAAGGACTGTCATAGCACAAAAAAAGTCAGTCTTGCTAGGTCAAAA
TAA
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protein sequence of rna6345

>rna6345-protein ID=rna6345-protein|Name=rna6345|organism=Nannochloropsis gaditana|type=polypeptide|length=276bp
MPDMLTSFTRTFALIHGVYVPIQDFYLVFILVQHFSGVMAIQDESFLRRR
LAENNAYFSRMVNLVPAELYLPKDDNNNGEANAKYFKNKRQAAPKQLKKE
ESKRGKKMKFDPANMKTVTELQTERAAKEKEEKERSKRMREDANEVGEGE
VEDSEDENDGDSDGVLEESEEEGEEEEEEEEEDDDAGDQKHEKGGTLPKE
ARDASKPSGRKGGGNEEEKAEEIGGGGNNFKKAKESGQGSTTRGPLSLVG
TTPRAKSIEELRERLRVRREGRGEED
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mRNA from alignment at CM002468.1:300610..302876-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6345 ID=rna6345|Name=rna6345|organism=Nannochloropsis gaditana|type=mRNA|length=2267bp|location=Sequence derived from alignment at CM002468.1:300610..302876- (Nannochloropsis gaditana)
TGGACTGGGAGGATGGGAATGCCCGGCGTTGCATCCATCTCCTCCAGGCC
ATGGCTGATACCCACCCCATCGGTAGTATCCTTGGATGCCCGACATGCTC
ACCTCTTTTACACGCACATTCGCCCTCATTCACGGTGTGTATGTACCTAT
ACAGGATTTTTATCTTGTATTTATTTTAGTGCAACATTTCTCTGGAGTCA
TGGCCATCCAAGATGAGAGTTTTCTACGGCGACGGCTGGCGGAGAATAAT
GCCTATTTCAGCCGCATGGTTAACTTGGTTCCTGCGGAGCTGTACTTACC
CAAAGACGACAACAACAACGGCGAGGCTAATGCGAAATATTTTAAGGTAC
GCTTCAACAATTCTGAGTGTGGTATGCATTTTATCGTTCGCTGGACCGAG
TGAGGAGCGATTGGCGTGGCCGAGGAGAGAGCTTGAAAATGTGAATCATG
TTTGGTAGAATTGAGACGTATCCAGCAATTTGTGGTGGCAAAAATTAATA
GTAGAAAGACTTGCTCCTGATGCTCTTGGATGTGATTGCTGGGTCGTAGC
ATGGAACATCGGAGGCCAACAGAGTCAGAACTGTCGCCTCCTCTATTGTA
TGAAGGTGGGAGGGAACATGTTTTTCGTCGATCGTTCCCTTCATACGAAT
GAAATATCCATTTGCTATTGCTCTGTTACTATGAACGTTCCATATTCAGA
ACAAGCGGCAAGCTGCACCCAAGCAATTGAAAAAGGAGGAATCGAAACGA
GGGAAGAAGATGAAATTTGATCCTGCCAACATGAAGACGGTGACGGAGCT
TCAGACAGAGAGGGCGGCTAAAGAGAAGGAAGAGAAGGAGCGAAGTAAAA
GGATGCGAGAAGATGCAAATGAGGTGGGGGAGGGGGAGGTGGAGGACAGT
GAGGATGAAAACGATGGTGACAGTGACGGAGTTTTGGAGGAGAGCGAGGA
GGAGGGAGAGGAGGAAGAGGAAGAGGAGGAGGAGGACGACGATGCTGGCG
ATCAAAAACATGAGAAGGGAGGGACTTTGCCGAAGGAAGCAAGGGATGCT
TCAAAACCTTCAGGGCGAAAAGGAGGAGGCAACGAAGAGGAAAAGGCGGA
AGAAATCGGTGGCGGGGGCAACAATTTCAAAAAAGCGAAGGAATCGGGCC
AGGGGTCGACGACCCGTGGGCCTCTGTCTTTGGTCGGTACCACACCACGG
GCTAAGTCTATCGAGGAGCTCCGAGAACGTCTGCGGGTAAGGAGGGAGGG
AAGGGGGGAGGAGGATTGACGTATTAGGGGCCCTGAGCAAGGGGCGGTTG
CTGATAAAAGCGCGTTCACTTACCTTTTTTCAATTTCAACTTTGTAGCTC
AAAATTGAGGAGGCGCGGGCAAAACGCGGAGGTGTCAGTGAAGGTGGAAA
CCGTCGAAGTGCCAAGAACAGCAGAGCTGCGACAGCTGCTGCCAATTTGA
ACCAGAATAAGCGAAAGAAAGGGCAGCTCGCGTCGCTTCCTTCCTCCTCT
CCGACAACCTCACCTGCTGCTGCAGCAGTAGCGGTGGGTCTGAGCAGTGG
GAGCAGTCATCAAAATGACGCCTCTGTAGATATTCAGTTTGGTAAGATTG
CCGTTCCTACTCCAGTAGCTTCTCGGAACTTGAAAAAGGGTGGTAAGAAC
CTTGTGGGGTTGCTGAAGAAGGCTGAGGAGAAGGAGAAACGCTTGAAGGA
GTTGCAGGCGACCGAGGGAGGAAAAGAAGAGGCATCCGCATTACTCTGGA
AGGATGCATTGAAAAGCGCGCACGGAGAAAAGATCCTGGATAATCCAAAG
CTGTTAAAGAAGGCGATCAAGAAGAAGGAAAAAGCCAAGGCAAAAAGTAA
AGAGAAATGGGGAGATAGGACCGCAAAAATTGAAGCGGCAGAGAGGGAAA
AACAAGGGAGACGAGAGGCCAATTTGAAGAAAAGAAAGTTGGGAGGTGTT
GAAGGCTGTCTAGCTGGGTCCAAGGCGGAGAAGGACAACAAAGAGAAGAG
CGGGGGACGGCAAGGTCGGGCAGGCTTTGAAGGAAAAAGGGCAGAATTTT
TAAATAAAGGTGCTGGGAAGAAGAGGAATGAGCAATTTGATGGAGAAACG
CATTTAAATAAAAAAAGAGAGGCCGGTGGTGGAAGTGCAAGCAGAAAGGG
ACAAGCATTGAACAGCGGTGGAGCTGGAAAAGGTCATAACCATCATCAGT
AGAAAGAATGCGTGTTGGTCGTACAGGACAAAGTAATTCAGAAACAATTA
TTTATTAAACGGGAAAA
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Coding sequence (CDS) from alignment at CM002468.1:300610..302876-

>rna6345 ID=rna6345|Name=rna6345|organism=Nannochloropsis gaditana|type=CDS|length=1662bp|location=Sequence derived from alignment at CM002468.1:300610..302876- (Nannochloropsis gaditana)
AACAAGCGGCAAGCTGCACCCAAGCAATTGAAAAAGGAGGAATCGAAACG
AGGGAAGAAGATGAAATTTGATCCTGCCAACATGAAGACGGTGACGGAGC
TTCAGACAGAGAGGGCGGCTAAAGAGAAGGAAGAGAAGGAGCGAAGTAAA
AGGATGCGAGAAGATGCAAATGAGGTGGGGGAGGGGGAGGTGGAGGACAG
TGAGGATGAAAACGATGGTGACAGTGACGGAGTTTTGGAGGAGAGCGAGG
AGGAGGGAGAGGAGGAAGAGGAAGAGGAGGAGGAGGACGACGATGCTGGC
GATCAAAAACATGAGAAGGGAGGGACTTTGCCGAAGGAAGCAAGGGATGC
TTCAAAACCTTCAGGGCGAAAAGGAGGAGGCAACGAAGAGGAAAAGGCGG
AAGAAATCGGTGGCGGGGGCAACAATTTCAAAAAAGCGAAGGAATCGGGC
CAGGGGTCGACGACCCGTGGGCCTCTGTCTTTGGTCGGTACCACACCACG
GGCTAAGTCTATCGAGGAGCTCCGAGAACGTCTGCGGGTAAGGAGGGAGG
GAAGGGGGGAGGAGGATTGAATGCCCGACATGCTCACCTCTTTTACACGC
ACATTCGCCCTCATTCACGGTGTGTATGTACCTATACAGGATTTTTATCT
TGTATTTATTTTAGTGCAACATTTCTCTGGAGTCATGGCCATCCAAGATG
AGAGTTTTCTACGGCGACGGCTGGCGGAGAATAATGCCTATTTCAGCCGC
ATGGTTAACTTGGTTCCTGCGGAGCTGTACTTACCCAAAGACGACAACAA
CAACGGCGAGGCTAATGCGAAATATTTTAAGAACAAGCGGCAAGCTGCAC
CCAAGCAATTGAAAAAGGAGGAATCGAAACGAGGGAAGAAGATGAAATTT
GATCCTGCCAACATGAAGACGGTGACGGAGCTTCAGACAGAGAGGGCGGC
TAAAGAGAAGGAAGAGAAGGAGCGAAGTAAAAGGATGCGAGAAGATGCAA
ATGAGGTGGGGGAGGGGGAGGTGGAGGACAGTGAGGATGAAAACGATGGT
GACAGTGACGGAGTTTTGGAGGAGAGCGAGGAGGAGGGAGAGGAGGAAGA
GGAAGAGGAGGAGGAGGACGACGATGCTGGCGATCAAAAACATGAGAAGG
GAGGGACTTTGCCGAAGGAAGCAAGGGATGCTTCAAAACCTTCAGGGCGA
AAAGGAGGAGGCAACGAAGAGGAAAAGGCGGAAGAAATCGGTGGCGGGGG
CAACAATTTCAAAAAAGCGAAGGAATCGGGCCAGGGGTCGACGACCCGTG
GGCCTCTGTCTTTGGTCGGTACCACACCACGGGCTAAGTCTATCGAGGAG
CTCCGAGAACGTCTGCGGGTAAGGAGGGAGGGAAGGGGGGAGGAGGATTG
AATGCCCGACATGCTCACCTCTTTTACACGCACATTCGCCCTCATTCACG
GTGTGTATGTACCTATACAGGATTTTTATCTTGTATTTATTTTAGTGCAA
CATTTCTCTGGAGTCATGGCCATCCAAGATGAGAGTTTTCTACGGCGACG
GCTGGCGGAGAATAATGCCTATTTCAGCCGCATGGTTAACTTGGTTCCTG
CGGAGCTGTACTTACCCAAAGACGACAACAACAACGGCGAGGCTAATGCG
AAATATTTTAAG
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Synonyms
Publications