EWM24339.1, cds6330 (CDS) Nannochloropsis gaditana

Overview
NameEWM24339.1
Unique Namecds6330
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:302531..302791 -
Alignment locationCM002468.1:301608..302177 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24339.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100105g13.10578.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:302531..302791 -
CM002468.1supercontigCM002468.1:301608..302177 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR029188Rrp14_N
Homology
BLAST of EWM24339.1 vs. NCBI_GenBank
Match: gi|585105733|gb|EWM24339.1| (hypothetical protein Naga_100105g13 [Nannochloropsis gaditana])

HSP 1 Score: 551.592 bits (1420), Expect = 0.000e+0
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 0
Query:    1 MPDMLTSFTRTFALIHGVYVPIQDFYLVFILVQHFSGVMAIQDESFLRRRLAENNAYFSRMVNLVPAELYLPKDDNNNGEANAKYFKNKRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERAAKEKEEKERSKRMREDANEVGEGEVEDSEDENDGDSDGVLEESEEEGEEEEEEEEEDDDAGDQKHEKGGTLPKEARDASKPSGRKGGGNEEEKAEEIGGGGNNFKKAKESGQGSTTRGPLSLVGTTPRAKSIEELRERLRVRREGRGEED 276
            MPDMLTSFTRTFALIHGVYVPIQDFYLVFILVQHFSGVMAIQDESFLRRRLAENNAYFSRMVNLVPAELYLPKDDNNNGEANAKYFKNKRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERAAKEKEEKERSKRMREDANEVGEGEVEDSEDENDGDSDGVLEESEEEGEEEEEEEEEDDDAGDQKHEKGGTLPKEARDASKPSGRKGGGNEEEKAEEIGGGGNNFKKAKESGQGSTTRGPLSLVGTTPRAKSIEELRERLRVRREGRGEED
Sbjct:    1 MPDMLTSFTRTFALIHGVYVPIQDFYLVFILVQHFSGVMAIQDESFLRRRLAENNAYFSRMVNLVPAELYLPKDDNNNGEANAKYFKNKRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERAAKEKEEKERSKRMREDANEVGEGEVEDSEDENDGDSDGVLEESEEEGEEEEEEEEEDDDAGDQKHEKGGTLPKEARDASKPSGRKGGGNEEEKAEEIGGGGNNFKKAKESGQGSTTRGPLSLVGTTPRAKSIEELRERLRVRREGRGEED 276          
BLAST of EWM24339.1 vs. NCBI_GenBank
Match: gi|553192507|ref|XP_005855585.1| (hypothetical protein NGA_0623900 [Nannochloropsis gaditana CCMP526] >gi|422293477|gb|EKU20777.1| hypothetical protein NGA_0623900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 360.533 bits (924), Expect = 1.378e-119
Identity = 221/237 (93.25%), Postives = 224/237 (94.51%), Query Frame = 0
Query:   39 MAIQDESFLRRRLAENNAYFSRMVNLVPAELYLPKDDNNNGEANAKYFKNKRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERAAKEKEEKERSKRMREDANEVGEGEVEDSEDENDGDSDGVLEESEEEGEEEEEEEEEDDDAGDQKHEKGGTLPKEARDASKPSGRKGGGNEEEKAEEIGGGG-----NNFKKAKESGQGSTTRGPLSLVGTTPRAKSIEELRERLRVRRE 270
            MAIQDESFLRRRLAENNAYFSRMVNLVPAELYLPKDDNN+GEANAKYFKNKRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERAAKEKEEKERSKRMREDANEVGEGEVEDSEDENDGDSDGVLEESEEEGEEEEEEEEEDDDAGDQKHEKGGTLPKEARD S     KGGG EEEKAEEIGGGG     NNFKKAKESGQGSTTRGPLSLVGTTPRAKSIEELRERLR++ E
Sbjct:    1 MAIQDESFLRRRLAENNAYFSRMVNLVPAELYLPKDDNNDGEANAKYFKNKRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERAAKEKEEKERSKRMREDANEVGEGEVEDSEDENDGDSDGVLEESEEEGEEEEEEEEEDDDAGDQKHEKGGTLPKEARDTS-----KGGGIEEEKAEEIGGGGLHIAANNFKKAKESGQGSTTRGPLSLVGTTPRAKSIEELRERLRLKIE 232          
BLAST of EWM24339.1 vs. NCBI_GenBank
Match: gi|924120610|emb|CUA71868.1| (hypothetical protein RSOLAG22IIIB_04814 [Rhizoctonia solani])

HSP 1 Score: 74.7146 bits (182), Expect = 1.036e-11
Identity = 42/91 (46.15%), Postives = 59/91 (64.84%), Query Frame = 0
Query:   39 MAIQDESFLRRRLAENNAYFSRMVNLVPAELYLP--KDDNNNGEANAKYFKN-KRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERA 126
            M I     LR  L E+N  F  ++ L+PA+ YLP  +DD+NNG   +KY KN K+Q+APKQ  KE +K+ ++ K DPAN K++ E+Q E A
Sbjct:    1 MPITPSHELRASLEEHNKIFETLLQLIPAKYYLPQERDDDNNG---SKYQKNKKKQSAPKQAIKEATKKARREKLDPANNKSILEIQREAA 88          
BLAST of EWM24339.1 vs. NCBI_GenBank
Match: gi|751062745|gb|KIK97388.1| (hypothetical protein PAXRUDRAFT_824971 [Paxillus rubicundulus Ve08.2h10])

HSP 1 Score: 73.559 bits (179), Expect = 3.055e-11
Identity = 44/110 (40.00%), Postives = 70/110 (63.64%), Query Frame = 0
Query:   30 ILVQHFSGVMAIQDESFLRRRLAENNAYFSRMVNLVPAELYLPKDDNNNGEANAKYFKN-KRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERAAKEKEEKERSKR 138
            +L+QH S   ++ D   LR  +  +NA F  +++L+P + YL KD++ +G A  KY K+ K Q  PKQ  KE SK+ ++ K DPAN K++ +LQ E AA E+E++  +K+
Sbjct:   12 VLIQHKSMPTSVDD---LRASIEAHNATFEVLLSLIPPKYYLVKDEDADGAAPRKYQKHSKNQKTPKQAVKEASKKSRREKLDPANQKSLVDLQNE-AAFEQEQENAAKK 117          
BLAST of EWM24339.1 vs. NCBI_GenBank
Match: gi|1176102535|ref|XP_020622024.1| (ribosomal RNA-processing protein 14-C-like [Orbicella faveolata])

HSP 1 Score: 72.0182 bits (175), Expect = 7.647e-11
Identity = 37/88 (42.05%), Postives = 57/88 (64.77%), Query Frame = 0
Query:   39 MAIQDESFLRRRLAENNAYFSRMVNLVPAELYLPKDDNNNGEANAKYFKNKRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERA 126
            MA + E  L +RLA+++AYF+ ++ L+P + YLP DD    E   K+ KN+++ APKQ  KE S++ K+ + DP   KT+ E+Q E A
Sbjct:    1 MADESELELEKRLADHSAYFNSLIELIPIKHYLPVDDE---EQENKFHKNRQKKAPKQSIKEASRKAKRARLDPNQHKTIHEIQKETA 85          
BLAST of EWM24339.1 vs. NCBI_GenBank
Match: gi|1044614590|gb|OCB89150.1| (hypothetical protein A7U60_g3633 [Sanghuangporus baumii])

HSP 1 Score: 71.633 bits (174), Expect = 1.239e-10
Identity = 61/140 (43.57%), Postives = 79/140 (56.43%), Query Frame = 0
Query:   47 LRRRLAENNAYFSRMVNLVPAELYLPKDDNNNGEANAKYFKNKR-QAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERA-------AKEKEEKERSKRMREDA-NEVGEGEVEDSE-DENDGDSDGVLEESEEEGEEE 176
            L+  L  +NA F  ++ L+PA+ YL  +D+  GE  +KY KN R Q APKQ  KE SK+ K+ K DPAN KT+ ELQ E A       A +K  K R     +D  N+ G G VED E D +  D DG  +ES+  GE E
Sbjct:    8 LKASLEGHNAEFEALLRLIPAKYYLVPEDS--GEYTSKYQKNSRKQKAPKQAIKEASKKAKRDKLDPANNKTIIELQEEAALLKNNNTAFKKNSKAREAGNDDDEDNDAGSG-VEDVELDMDRMDVDGDADESDASGEGE 144          
BLAST of EWM24339.1 vs. NCBI_GenBank
Match: gi|695570794|ref|XP_009550978.1| (hypothetical protein HETIRDRAFT_327684 [Heterobasidion irregulare TC 32-1] >gi|575061857|gb|ETW77476.1| hypothetical protein HETIRDRAFT_327684 [Heterobasidion irregulare TC 32-1])

HSP 1 Score: 71.633 bits (174), Expect = 1.277e-10
Identity = 42/114 (36.84%), Postives = 68/114 (59.65%), Query Frame = 0
Query:   51 LAENNAYFSRMVNLVPAELYLPKDDNNNGEANAKYFKNKR-QAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERAAKEKEEKERSKRMREDANEVGEGEVEDSEDENDGDSD 163
            L ++NA F  ++ L+PA+ YL +DD ++   ++KY KNKR + APKQ  KE SK+ ++ K DPAN K++ ++Q ERA+     K+          +  +   +D+ DE DG +D
Sbjct:   12 LEKHNATFESLLRLIPAKFYLVQDDGDDQVRSSKYHKNKRNKQAPKQAIKEASKKARREKLDPANNKSILDIQNERASASARAKKGKA------KQAQKHPADDASDEEDGAAD 119          
BLAST of EWM24339.1 vs. NCBI_GenBank
Match: gi|1043288844|gb|OBZ76061.1| (Ribosomal RNA-processing protein 14 [Grifola frondosa])

HSP 1 Score: 71.2478 bits (173), Expect = 1.677e-10
Identity = 48/131 (36.64%), Postives = 74/131 (56.49%), Query Frame = 0
Query:   45 SFLRRRLAENNAYFSRMVNLVPAELYLPKDDNNNGEANAKYFKNKRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERAAKEKEEKERSKRMREDANEVGEGEVEDSEDENDGDSDGV-LEESEEEGE 174
            + L+  L ++N  F  ++ L+PA  YL +DD ++         +K+Q APKQ  KE SK+ K+ K DPAN KT+ ELQ E   +E   K+R+K           G+ + +  ++D DSDG+ L+ S +EGE
Sbjct:    6 TVLQSSLEKHNETFENLLKLIPARFYLLQDDADS---------SKKQKAPKQAIKEASKKAKRDKLDPANNKTILELQHESLTREDANKKRTK-----------GKRKAAALDSDADSDGIELDISIDEGE 116          
BLAST of EWM24339.1 vs. NCBI_GenBank
Match: gi|599096272|ref|XP_007379557.1| (SURF6-domain-containing protein [Punctularia strigosozonata HHB-11173 SS5] >gi|390605249|gb|EIN14640.1| SURF6-domain-containing protein [Punctularia strigosozonata HHB-11173 SS5])

HSP 1 Score: 69.707 bits (169), Expect = 6.889e-10
Identity = 38/81 (46.91%), Postives = 55/81 (67.90%), Query Frame = 0
Query:   47 LRRRLAENNAYFSRMVNLVPAELYLPKDDNNNGEANAKYFKN-KRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERA 126
            L+  L ++NA F  ++NL+PA+ YL +++    +ANAKY K+ K+  APKQ  KE  K+ K+ K DPAN KT+ ELQ E+A
Sbjct:    8 LKASLEKHNATFESLLNLIPAKFYLVQEETEE-QANAKYQKHSKKTKAPKQAIKEAGKKAKREKLDPANHKTIVELQHEKA 87          
BLAST of EWM24339.1 vs. NCBI_GenBank
Match: gi|751006482|gb|KIK48561.1| (hypothetical protein CY34DRAFT_798065 [Suillus luteus UH-Slu-Lm8-n1])

HSP 1 Score: 69.3218 bits (168), Expect = 8.672e-10
Identity = 47/123 (38.21%), Postives = 74/123 (60.16%), Query Frame = 0
Query:   46 FLRRRLAENNAYFSRMVNLVPAELYLPKDDNNNGEAN--AKYFKN-KRQAAPKQLKKEESKRGKKMKFDPANMKTVTELQTERAAKEKEEKERSKRMREDANEVGEGEVEDSEDENDGDSDGV 165
             LR  +  +N  F  ++NL+PA+ YLPKDD++ G+ N  +KY K+ K + APKQ  KE SK+ ++ K DPAN K+V +LQ E A + +    ++K  R+ A    + + ++ EDE+    D V
Sbjct:    7 VLRASVEAHNDTFEALLNLIPAKYYLPKDDHD-GDDNIPSKYQKHSKNKKAPKQAAKEASKKARRDKLDPANQKSVIDLQNEAALELEGANSKAKGKRKAAVLGSDSDADNDEDEDVMQVDDV 128          
The following BLAST results are available for this feature:
BLAST of EWM24339.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585105733|gb|EWM24339.1|0.000e+0100.00hypothetical protein Naga_100105g13 [Nannochlorops... [more]
gi|553192507|ref|XP_005855585.1|1.378e-11993.25hypothetical protein NGA_0623900 [Nannochloropsis ... [more]
gi|924120610|emb|CUA71868.1|1.036e-1146.15hypothetical protein RSOLAG22IIIB_04814 [Rhizocton... [more]
gi|751062745|gb|KIK97388.1|3.055e-1140.00hypothetical protein PAXRUDRAFT_824971 [Paxillus r... [more]
gi|1176102535|ref|XP_020622024.1|7.647e-1142.05ribosomal RNA-processing protein 14-C-like [Orbice... [more]
gi|1044614590|gb|OCB89150.1|1.239e-1043.57hypothetical protein A7U60_g3633 [Sanghuangporus b... [more]
gi|695570794|ref|XP_009550978.1|1.277e-1036.84hypothetical protein HETIRDRAFT_327684 [Heterobasi... [more]
gi|1043288844|gb|OBZ76061.1|1.677e-1036.64Ribosomal RNA-processing protein 14 [Grifola frond... [more]
gi|599096272|ref|XP_007379557.1|6.889e-1046.91SURF6-domain-containing protein [Punctularia strig... [more]
gi|751006482|gb|KIK48561.1|8.672e-1038.21hypothetical protein CY34DRAFT_798065 [Suillus lut... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6345rna6345Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications