rna6344, rna6344 (mRNA) Nannochloropsis gaditana

Overview
Namerna6344
Unique Namerna6344
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1980
Alignment locationCM002468.1:299163..300110 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100105g14.10575.mrna
Orig protein idgnl|cribi|Naga_100105g14.10575
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:299163..300110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100105g14gene6131Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna6344rna6344-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24336.1cds6329Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna6344 ID=rna6344|Name=rna6344|organism=Nannochloropsis gaditana|type=mRNA|length=1980bp
ATGGCCCATTATGACTCAATTATTTTTCTCGTATTCCTTTCCACGTCCAA
TGCAGAGTCCTCCCTTGAGGAGCCGATGCGATCGAAATACACACGAAAAT
ATTTTTTAGGCGCTGGAGCACTTGGTCGGCTATATTTGGTGATTTTACCC
GCCGTGAGTTCTTTCATCCATGCCTATCACTCTGCGGACGGCAGCAGCCA
TGTCTGTCGGATGATACACCTCGACGAAACACGATTCCCGGTTCTTGCAC
CAGAAGCGGAACCAGCTAAGAATCGTACTTTGCCGAGTGTCACGTTATCG
GACACCATAAATTTAATCCCCTTGTTGGAGCGAGATGCAGAGACAGGTCT
TGTCTCTTTCGGGCCACACGCTACCCTTCGTTTTGACGCGTGGATCTCCT
CCTCGTCAACAAGCGAGCCGTGCACACCTTCAAGTCTTGTTCTCAAAGCC
ACGTCAGGCAGTGTCAAGGTGAGGATACCTATTCCTCAGGCTAGTGGCTG
GGCTACCGACAAATGGCTGACTGTCGACGCGCCATTACCCGCCCGACACG
CGATCTACAATGACTATGAAATATGGAATGCGCTGTCTCGCGTAGAACTC
GACTACGAGTGTAATAATCCTGGGTCGAGTGCATTTGATACCGCGATAAG
GGCTCCAACTCCCGCTGAAACGATGCTTTCTACCCTGAATGAAAACCTGA
TGAAGATCCAGCTTCTTCGGATCTGCAAAGCCGTGCCCGGACCCTCTGTG
TGTACCATTACGTCGACATATGAGTACAAGACCGAATGTCGGGAATGCAA
TTGCCAAATTTGCCACAAAGAGGACTGTGGATGCCTGCCTTCGTCCACCG
GACATTGCCCGTACGGGACGTGCGATGCGTGCCCTTGCAGTCCCCTGTGT
CGATGCTGTTACGACTCTGCCTGCGCTTACAAGTGCAATTGCGAATCTTG
CTGCGAGACCCGCTCCTTCACTTCGTGCTCCACCGCCGTCACGTACGGAG
TGGACCGGCTGACGCCCCCGGCGGGCACGGCAGAAGAGGGCACGCATGTC
ATTCTGAGCGCTAGCACCCCCTTCGTAGCAACGCCGGAGATGGCTTGCAG
GTTCGGAGACGAAAGGACAGGGACGGTAGTGCCTGCCACCCTCATCTCGG
CCCGTTCCCTGATGTGCGCCGTACCTGCGTTGCTTGGCGTGCAAGGACGT
GACGACAGAGAGGACGGTGACGGCGGGGATGCTCTGGGAAGGAGCGTGGA
GGTGGAGGCGACTCTGGATGGCATTAATTGGACACGTTCAAACCTGACGT
ATCATTTTTGTCCCCCCCACGAGGACCTGCTGGACGCGTGCTTGACTGCT
CATGGGAACTGTGGACCGGGATGGACGGGGCGCCGGTGCGACATCGAATG
CCCTGGAGGCGCCGAGAACGCTTGCCATCGTCGAGGGGTGTGTACGCCAC
GTAGTGAGGGGGTGTCGGGCATGGCAGGGGAAAAGGAAGAGGCGGTGTGT
CTGTGTTCTCGAGGCTATCAGGGACTCGCTTGCGATGTAAAAATCCAAAC
GGCCTTCGAAGGCAATCTGCCCCCCACGACGTCCATCCAGTCTCTTCAAG
GAGCCTCGTCTCTGGAGTCAGGCACACCTGACACTTATAGCCACCAGACA
TCTGCAAGGCGTCGAGGAGTCCTTTTGGGTGCAGGGGCGTGCTTCCTTCT
CATTGTTATTGTGGGCGTGGGCGTGTGCGTGAAAAAGACGGACGTGGCTG
AATATGTTTTTTGGAGGCTTGCTGCTTCACGGTTCCGCCGGTCGCGCACA
GGGCAGGAGGAAGAAGCTTTTTTATGTGAGGGAGAGAAGGTAAGTGCAAG
GGTTGAGGGAGGTAGTCAGGTGGAACTCACACCGTCAGGGTCGTTGGTGC
CATATCTGCCTGTCTGGCCGTGCAACTCGCCCCAAGAATATGACGAGGAG
GGCGGGGTGGATGGAATTACAATTATGTAA
back to top

protein sequence of rna6344

>rna6344-protein ID=rna6344-protein|Name=rna6344|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MWPFSVNSKLCGVTRRCLIIGIASVLLPVIVIASLVGVYYPKAPEIRATT
TEINSLKINGMESVSVDADVDLEIVNKNKNYPIAFDPVELDFYFPSSPES
RVGTGVLEGGVIPGGETTTRKLHAVFDAPWSMLGASFLRNMNQGATTLLV
KGHVLGFSTILKSDFRLSSELECILSYTWDDQKTHKDCHSTKKVSLARSK
back to top

mRNA from alignment at CM002468.1:299163..300110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna6344 ID=rna6344|Name=rna6344|organism=Nannochloropsis gaditana|type=mRNA|length=948bp|location=Sequence derived from alignment at CM002468.1:299163..300110- (Nannochloropsis gaditana)
ATGTGGCCTTTCTCTGTCAACAGCAAATTGTGCGGAGTCACCCGTCGGTG
CCTCATCATTGGTATCGCTTCCGTGCTATTGCCTGTCATTGTAATCGCAT
CTCTAGTAGGCGTCTACTATCCTAAGGGTGAGTTTAAGTGAAGGGTTCGA
AGGAAAAAAGGGGATGAGTGCAGGGGAGGACTCAGGCTACGACATGGCGG
TATAAAAAAACGCTTGCTTGGCGTGCTCGATGCTCATCTGTTATCGTTTT
TCCCAAATTGTACAATAGTACACGAAGCAACTCTCTCATGTCTGATGGAT
CTTCAATCAACCTCACAGCCCCAGAGATCCGAGCAACAACAACTGAGATT
AATTCTCTCAAGATAAATGGCATGGAATCAGTCTCAGTAGATGCCGACGT
TGATCTCGAAATTGTGAACAAAAATAAAAATTATCCGATTGCCTTTGATC
CTGTTGAATTAGATTTCTATTTTCCATCGAGTCCTGAATCTCGGGTGGGT
ACAGGAGTGCTGGAGGGTGGCGTGATCCCTGGAGGCGAGACGACCACGCG
TAAGCTGCATGCAGTCTTCGATGCGCCCTGGAGTATGCTTGGTAAGTATG
ACTCATAACGTAGGCTTCAAGAGATCCCATGGGTGGGCAAGAATAAGATA
TAAGACTGGTATATTTGTTATTACTTAGATAAAAGCATGTCTGCTCAAAT
CATCCCGTTCATATATAATGCTTTTTTTCATGACCTAAACGATAGGGGCC
AGTTTTCTTCGTAACATGAATCAAGGGGCCACCACTTTGTTGGTAAAGGG
GCATGTATTAGGATTCTCCACAATTCTGAAAAGCGATTTCCGTTTGTCAT
CCGAGCTAGAATGTATCCTCAGCTACACATGGGACGATCAAAAAACACAC
AAGGACTGTCATAGCACAAAAAAAGTCAGTCTTGCTAGGTCAAAATAA
back to top

Coding sequence (CDS) from alignment at CM002468.1:299163..300110-

>rna6344 ID=rna6344|Name=rna6344|organism=Nannochloropsis gaditana|type=CDS|length=1809bp|location=Sequence derived from alignment at CM002468.1:299163..300110- (Nannochloropsis gaditana)
GGGCCAGTTTTCTTCGTAACATGAATCAAGGGGCCACCACTTTGTTGGTA
AAGGGGCATGTATTAGGATTCTCCACAATTCTGAAAAGCGATTTCCGTTT
GTCATCCGAGCTAGAATGTATCCTCAGCTACACATGGGACGATCAAAAAA
CACACAAGGACTGTCATAGCACAAAAAAAGTCAGTCTTGCTAGGTCAAAA
TAACCCCAGAGATCCGAGCAACAACAACTGAGATTAATTCTCTCAAGATA
AATGGCATGGAATCAGTCTCAGTAGATGCCGACGTTGATCTCGAAATTGT
GAACAAAAATAAAAATTATCCGATTGCCTTTGATCCTGTTGAATTAGATT
TCTATTTTCCATCGAGTCCTGAATCTCGGGTGGGTACAGGAGTGCTGGAG
GGTGGCGTGATCCCTGGAGGCGAGACGACCACGCGTAAGCTGCATGCAGT
CTTCGATGCGCCCTGGAGTATGCTTGATGTGGCCTTTCTCTGTCAACAGC
AAATTGTGCGGAGTCACCCGTCGGTGCCTCATCATTGGTATCGCTTCCGT
GCTATTGCCTGTCATTGTAATCGCATCTCTAGTAGGCGTCTACTATCCTA
AGGGGGCCAGTTTTCTTCGTAACATGAATCAAGGGGCCACCACTTTGTTG
GTAAAGGGGCATGTATTAGGATTCTCCACAATTCTGAAAAGCGATTTCCG
TTTGTCATCCGAGCTAGAATGTATCCTCAGCTACACATGGGACGATCAAA
AAACACACAAGGACTGTCATAGCACAAAAAAAGTCAGTCTTGCTAGGTCA
AAATAACCCCAGAGATCCGAGCAACAACAACTGAGATTAATTCTCTCAAG
ATAAATGGCATGGAATCAGTCTCAGTAGATGCCGACGTTGATCTCGAAAT
TGTGAACAAAAATAAAAATTATCCGATTGCCTTTGATCCTGTTGAATTAG
ATTTCTATTTTCCATCGAGTCCTGAATCTCGGGTGGGTACAGGAGTGCTG
GAGGGTGGCGTGATCCCTGGAGGCGAGACGACCACGCGTAAGCTGCATGC
AGTCTTCGATGCGCCCTGGAGTATGCTTGATGTGGCCTTTCTCTGTCAAC
AGCAAATTGTGCGGAGTCACCCGTCGGTGCCTCATCATTGGTATCGCTTC
CGTGCTATTGCCTGTCATTGTAATCGCATCTCTAGTAGGCGTCTACTATC
CTAAGGGGGCCAGTTTTCTTCGTAACATGAATCAAGGGGCCACCACTTTG
TTGGTAAAGGGGCATGTATTAGGATTCTCCACAATTCTGAAAAGCGATTT
CCGTTTGTCATCCGAGCTAGAATGTATCCTCAGCTACACATGGGACGATC
AAAAAACACACAAGGACTGTCATAGCACAAAAAAAGTCAGTCTTGCTAGG
TCAAAATAACCCCAGAGATCCGAGCAACAACAACTGAGATTAATTCTCTC
AAGATAAATGGCATGGAATCAGTCTCAGTAGATGCCGACGTTGATCTCGA
AATTGTGAACAAAAATAAAAATTATCCGATTGCCTTTGATCCTGTTGAAT
TAGATTTCTATTTTCCATCGAGTCCTGAATCTCGGGTGGGTACAGGAGTG
CTGGAGGGTGGCGTGATCCCTGGAGGCGAGACGACCACGCGTAAGCTGCA
TGCAGTCTTCGATGCGCCCTGGAGTATGCTTGATGTGGCCTTTCTCTGTC
AACAGCAAATTGTGCGGAGTCACCCGTCGGTGCCTCATCATTGGTATCGC
TTCCGTGCTATTGCCTGTCATTGTAATCGCATCTCTAGTAGGCGTCTACT
ATCCTAAGG
back to top
Synonyms
Publications