rna6343, rna6343 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6343
Unique Name	rna6343
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	975
Alignment location	CM002468.1:296749..298728 -

Link to JBrowse

Properties


Property Name	Value
Product	EGF-like region, conserved site
Orig transcript id	gnl\|cribi\|Naga_100105g15.10573.mrna
Orig protein id	gnl\|cribi\|Naga_100105g15.10573
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:296749..298728 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100105g15	gene6130	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24334.1	cds6328	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6343	rna6343-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:296749..298728-
coding sequence from alignment at CM002468.1:296749..298728-

mRNA sequence

>rna6343 ID=rna6343|Name=rna6343|organism=Nannochloropsis gaditana|type=mRNA|length=975bp
ATGAACGCAATTGCAAACGGAAGGATGCAGTGGTTGTCTCTGTCAATGCT
GGCTTTAGCCACGGTGGGCAGCGCCTTTATCTTCCCCGCCAGCCGCCCAG
GCACAAGACTGGTCGCAGAACCACTCACCAAGTTGAACGTCGTCGTTTCT
GAGACCACGCGTGAGGGGGTGCCCATGCCCGAACCCAACGTGAAGCCGGC
CACGGACAAGCTGTTTGTTTACTTATGGATAGACCACCTTGGAAACCGCG
TTTATCGCGCGACCCGCAACATCGGCGCTTCGCCTCGCCGCATCCAGCTC
TGGAACCCCTTGGCATCCGATGCCGATCAGGCATACCCGGAAACCGGCGA
CTCCACGGCCCCAAGCTTCACCAAATACGAGGTCTTGGGCGACGATAACC
TGGACGCATGGGTAGAGAGCGGTTTTGGAGAGTTCGACGACGTGGAGCCT
TCCCCCGTGGCCTACACCATTGAAGGCGCCGAAGAGGGCGGGGCGCGGGG
GGAGATGGAGGGCGAGGGCCAACGGGAGGAGGCCAAGGAGCTGACCTCGG
AGGAAATCGAGGCCTCCATCAACGCCTACAACGAGTACTACCCACCTGCC
TCCTTTGACGCCCTGGTCACGGCCATGCAGGCAAGCTGGCGCACCATCAT
CCTCTCCCGGGGTAAGCAGGGGGCCAAAGCGATGCGAGAGTTCTATCGGG
ATCTACACAAAGCTCACCCGGAGCTCGAGCAGAAAGTATGGATCATGGAG
ACGCACGCAACGCGCTCCCCTGTCCCGGAGGATCCGGACACGTACAACCA
CTGGATGAGCGACGAGGATATATTGAAAATGGCTCGTGTGGCGACGGACG
GGCACGACGACGTGGTGGAGTTCTCGGGCCTGGAATTTGAAGACTCGATG
GACGGGATCAAGGGGGAGGACTGGGTAACCATTCCACCCCCTTTGTCGTG
GTTCAAGGACGAAGCGAAGAAATGA

protein sequence of rna6343

>rna6343-protein ID=rna6343-protein|Name=rna6343|organism=Nannochloropsis gaditana|type=polypeptide|length=659bp
MAHYDSIIFLVFLSTSNAESSLEEPMRSKYTRKYFLGAGALGRLYLVILP
AVSSFIHAYHSADGSSHVCRMIHLDETRFPVLAPEAEPAKNRTLPSVTLS
DTINLIPLLERDAETGLVSFGPHATLRFDAWISSSSTSEPCTPSSLVLKA
TSGSVKVRIPIPQASGWATDKWLTVDAPLPARHAIYNDYEIWNALSRVEL
DYECNNPGSSAFDTAIRAPTPAETMLSTLNENLMKIQLLRICKAVPGPSV
CTITSTYEYKTECRECNCQICHKEDCGCLPSSTGHCPYGTCDACPCSPLC
RCCYDSACAYKCNCESCCETRSFTSCSTAVTYGVDRLTPPAGTAEEGTHV
ILSASTPFVATPEMACRFGDERTGTVVPATLISARSLMCAVPALLGVQGR
DDREDGDGGDALGRSVEVEATLDGINWTRSNLTYHFCPPHEDLLDACLTA
HGNCGPGWTGRRCDIECPGGAENACHRRGVCTPRSEGVSGMAGEKEEAVC
LCSRGYQGLACDVKIQTAFEGNLPPTTSIQSLQGASSLESGTPDTYSHQT
SARRRGVLLGAGACFLLIVIVGVGVCVKKTDVAEYVFWRLAASRFRRSRT
GQEEEAFLCEGEKVSARVEGGSQVELTPSGSLVPYLPVWPCNSPQEYDEE
GGVDGITIM

mRNA from alignment at CM002468.1:296749..298728-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6343 ID=rna6343|Name=rna6343|organism=Nannochloropsis gaditana|type=mRNA|length=1980bp|location=Sequence derived from alignment at CM002468.1:296749..298728- (Nannochloropsis gaditana)
ATGGCCCATTATGACTCAATTATTTTTCTCGTATTCCTTTCCACGTCCAA
TGCAGAGTCCTCCCTTGAGGAGCCGATGCGATCGAAATACACACGAAAAT
ATTTTTTAGGCGCTGGAGCACTTGGTCGGCTATATTTGGTGATTTTACCC
GCCGTGAGTTCTTTCATCCATGCCTATCACTCTGCGGACGGCAGCAGCCA
TGTCTGTCGGATGATACACCTCGACGAAACACGATTCCCGGTTCTTGCAC
CAGAAGCGGAACCAGCTAAGAATCGTACTTTGCCGAGTGTCACGTTATCG
GACACCATAAATTTAATCCCCTTGTTGGAGCGAGATGCAGAGACAGGTCT
TGTCTCTTTCGGGCCACACGCTACCCTTCGTTTTGACGCGTGGATCTCCT
CCTCGTCAACAAGCGAGCCGTGCACACCTTCAAGTCTTGTTCTCAAAGCC
ACGTCAGGCAGTGTCAAGGTGAGGATACCTATTCCTCAGGCTAGTGGCTG
GGCTACCGACAAATGGCTGACTGTCGACGCGCCATTACCCGCCCGACACG
CGATCTACAATGACTATGAAATATGGAATGCGCTGTCTCGCGTAGAACTC
GACTACGAGTGTAATAATCCTGGGTCGAGTGCATTTGATACCGCGATAAG
GGCTCCAACTCCCGCTGAAACGATGCTTTCTACCCTGAATGAAAACCTGA
TGAAGATCCAGCTTCTTCGGATCTGCAAAGCCGTGCCCGGACCCTCTGTG
TGTACCATTACGTCGACATATGAGTACAAGACCGAATGTCGGGAATGCAA
TTGCCAAATTTGCCACAAAGAGGACTGTGGATGCCTGCCTTCGTCCACCG
GACATTGCCCGTACGGGACGTGCGATGCGTGCCCTTGCAGTCCCCTGTGT
CGATGCTGTTACGACTCTGCCTGCGCTTACAAGTGCAATTGCGAATCTTG
CTGCGAGACCCGCTCCTTCACTTCGTGCTCCACCGCCGTCACGTACGGAG
TGGACCGGCTGACGCCCCCGGCGGGCACGGCAGAAGAGGGCACGCATGTC
ATTCTGAGCGCTAGCACCCCCTTCGTAGCAACGCCGGAGATGGCTTGCAG
GTTCGGAGACGAAAGGACAGGGACGGTAGTGCCTGCCACCCTCATCTCGG
CCCGTTCCCTGATGTGCGCCGTACCTGCGTTGCTTGGCGTGCAAGGACGT
GACGACAGAGAGGACGGTGACGGCGGGGATGCTCTGGGAAGGAGCGTGGA
GGTGGAGGCGACTCTGGATGGCATTAATTGGACACGTTCAAACCTGACGT
ATCATTTTTGTCCCCCCCACGAGGACCTGCTGGACGCGTGCTTGACTGCT
CATGGGAACTGTGGACCGGGATGGACGGGGCGCCGGTGCGACATCGAATG
CCCTGGAGGCGCCGAGAACGCTTGCCATCGTCGAGGGGTGTGTACGCCAC
GTAGTGAGGGGGTGTCGGGCATGGCAGGGGAAAAGGAAGAGGCGGTGTGT
CTGTGTTCTCGAGGCTATCAGGGACTCGCTTGCGATGTAAAAATCCAAAC
GGCCTTCGAAGGCAATCTGCCCCCCACGACGTCCATCCAGTCTCTTCAAG
GAGCCTCGTCTCTGGAGTCAGGCACACCTGACACTTATAGCCACCAGACA
TCTGCAAGGCGTCGAGGAGTCCTTTTGGGTGCAGGGGCGTGCTTCCTTCT
CATTGTTATTGTGGGCGTGGGCGTGTGCGTGAAAAAGACGGACGTGGCTG
AATATGTTTTTTGGAGGCTTGCTGCTTCACGGTTCCGCCGGTCGCGCACA
GGGCAGGAGGAAGAAGCTTTTTTATGTGAGGGAGAGAAGGTAAGTGCAAG
GGTTGAGGGAGGTAGTCAGGTGGAACTCACACCGTCAGGGTCGTTGGTGC
CATATCTGCCTGTCTGGCCGTGCAACTCGCCCCAAGAATATGACGAGGAG
GGCGGGGTGGATGGAATTACAATTATGTAA

Coding sequence (CDS) from alignment at CM002468.1:296749..298728-

>rna6343 ID=rna6343|Name=rna6343|organism=Nannochloropsis gaditana|type=CDS|length=1980bp|location=Sequence derived from alignment at CM002468.1:296749..298728- (Nannochloropsis gaditana)
ATGGCCCATTATGACTCAATTATTTTTCTCGTATTCCTTTCCACGTCCAA
TGCAGAGTCCTCCCTTGAGGAGCCGATGCGATCGAAATACACACGAAAAT
ATTTTTTAGGCGCTGGAGCACTTGGTCGGCTATATTTGGTGATTTTACCC
GCCGTGAGTTCTTTCATCCATGCCTATCACTCTGCGGACGGCAGCAGCCA
TGTCTGTCGGATGATACACCTCGACGAAACACGATTCCCGGTTCTTGCAC
CAGAAGCGGAACCAGCTAAGAATCGTACTTTGCCGAGTGTCACGTTATCG
GACACCATAAATTTAATCCCCTTGTTGGAGCGAGATGCAGAGACAGGTCT
TGTCTCTTTCGGGCCACACGCTACCCTTCGTTTTGACGCGTGGATCTCCT
CCTCGTCAACAAGCGAGCCGTGCACACCTTCAAGTCTTGTTCTCAAAGCC
ACGTCAGGCAGTGTCAAGGTGAGGATACCTATTCCTCAGGCTAGTGGCTG
GGCTACCGACAAATGGCTGACTGTCGACGCGCCATTACCCGCCCGACACG
CGATCTACAATGACTATGAAATATGGAATGCGCTGTCTCGCGTAGAACTC
GACTACGAGTGTAATAATCCTGGGTCGAGTGCATTTGATACCGCGATAAG
GGCTCCAACTCCCGCTGAAACGATGCTTTCTACCCTGAATGAAAACCTGA
TGAAGATCCAGCTTCTTCGGATCTGCAAAGCCGTGCCCGGACCCTCTGTG
TGTACCATTACGTCGACATATGAGTACAAGACCGAATGTCGGGAATGCAA
TTGCCAAATTTGCCACAAAGAGGACTGTGGATGCCTGCCTTCGTCCACCG
GACATTGCCCGTACGGGACGTGCGATGCGTGCCCTTGCAGTCCCCTGTGT
CGATGCTGTTACGACTCTGCCTGCGCTTACAAGTGCAATTGCGAATCTTG
CTGCGAGACCCGCTCCTTCACTTCGTGCTCCACCGCCGTCACGTACGGAG
TGGACCGGCTGACGCCCCCGGCGGGCACGGCAGAAGAGGGCACGCATGTC
ATTCTGAGCGCTAGCACCCCCTTCGTAGCAACGCCGGAGATGGCTTGCAG
GTTCGGAGACGAAAGGACAGGGACGGTAGTGCCTGCCACCCTCATCTCGG
CCCGTTCCCTGATGTGCGCCGTACCTGCGTTGCTTGGCGTGCAAGGACGT
GACGACAGAGAGGACGGTGACGGCGGGGATGCTCTGGGAAGGAGCGTGGA
GGTGGAGGCGACTCTGGATGGCATTAATTGGACACGTTCAAACCTGACGT
ATCATTTTTGTCCCCCCCACGAGGACCTGCTGGACGCGTGCTTGACTGCT
CATGGGAACTGTGGACCGGGATGGACGGGGCGCCGGTGCGACATCGAATG
CCCTGGAGGCGCCGAGAACGCTTGCCATCGTCGAGGGGTGTGTACGCCAC
GTAGTGAGGGGGTGTCGGGCATGGCAGGGGAAAAGGAAGAGGCGGTGTGT
CTGTGTTCTCGAGGCTATCAGGGACTCGCTTGCGATGTAAAAATCCAAAC
GGCCTTCGAAGGCAATCTGCCCCCCACGACGTCCATCCAGTCTCTTCAAG
GAGCCTCGTCTCTGGAGTCAGGCACACCTGACACTTATAGCCACCAGACA
TCTGCAAGGCGTCGAGGAGTCCTTTTGGGTGCAGGGGCGTGCTTCCTTCT
CATTGTTATTGTGGGCGTGGGCGTGTGCGTGAAAAAGACGGACGTGGCTG
AATATGTTTTTTGGAGGCTTGCTGCTTCACGGTTCCGCCGGTCGCGCACA
GGGCAGGAGGAAGAAGCTTTTTTATGTGAGGGAGAGAAGGTAAGTGCAAG
GGTTGAGGGAGGTAGTCAGGTGGAACTCACACCGTCAGGGTCGTTGGTGC
CATATCTGCCTGTCTGGCCGTGCAACTCGCCCCAAGAATATGACGAGGAG
GGCGGGGTGGATGGAATTACAATTATGTAA

Synonyms

Publications