EWM24334.1, cds6328 (CDS) Nannochloropsis gaditana

Overview
NameEWM24334.1
Unique Namecds6328
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002468.1:296749..298728 -

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Properties
Property NameValue
Protein idEWM24334.1
ProductEGF-like region, conserved site
Orig transcript idgnl|cribi|Naga_100105g15.10573.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002468.1supercontigCM002468.1:296749..298728 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013032EGF-like_CS
Homology
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BLAST of EWM24334.1 vs. NCBI_GenBank
Match: gi|585105728|gb|EWM24334.1| (EGF-like region, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 1351.27 bits (3496), Expect = 0.000e+0
Identity = 659/659 (100.00%), Postives = 659/659 (100.00%), Query Frame = 0 
Query:    1 MAHYDSIIFLVFLSTSNAESSLEEPMRSKYTRKYFLGAGALGRLYLVILPAVSSFIHAYHSADGSSHVCRMIHLDETRFPVLAPEAEPAKNRTLPSVTLSDTINLIPLLERDAETGLVSFGPHATLRFDAWISSSSTSEPCTPSSLVLKATSGSVKVRIPIPQASGWATDKWLTVDAPLPARHAIYNDYEIWNALSRVELDYECNNPGSSAFDTAIRAPTPAETMLSTLNENLMKIQLLRICKAVPGPSVCTITSTYEYKTECRECNCQICHKEDCGCLPSSTGHCPYGTCDACPCSPLCRCCYDSACAYKCNCESCCETRSFTSCSTAVTYGVDRLTPPAGTAEEGTHVILSASTPFVATPEMACRFGDERTGTVVPATLISARSLMCAVPALLGVQGRDDREDGDGGDALGRSVEVEATLDGINWTRSNLTYHFCPPHEDLLDACLTAHGNCGPGWTGRRCDIECPGGAENACHRRGVCTPRSEGVSGMAGEKEEAVCLCSRGYQGLACDVKIQTAFEGNLPPTTSIQSLQGASSLESGTPDTYSHQTSARRRGVLLGAGACFLLIVIVGVGVCVKKTDVAEYVFWRLAASRFRRSRTGQEEEAFLCEGEKVSARVEGGSQVELTPSGSLVPYLPVWPCNSPQEYDEEGGVDGITIM 659
            MAHYDSIIFLVFLSTSNAESSLEEPMRSKYTRKYFLGAGALGRLYLVILPAVSSFIHAYHSADGSSHVCRMIHLDETRFPVLAPEAEPAKNRTLPSVTLSDTINLIPLLERDAETGLVSFGPHATLRFDAWISSSSTSEPCTPSSLVLKATSGSVKVRIPIPQASGWATDKWLTVDAPLPARHAIYNDYEIWNALSRVELDYECNNPGSSAFDTAIRAPTPAETMLSTLNENLMKIQLLRICKAVPGPSVCTITSTYEYKTECRECNCQICHKEDCGCLPSSTGHCPYGTCDACPCSPLCRCCYDSACAYKCNCESCCETRSFTSCSTAVTYGVDRLTPPAGTAEEGTHVILSASTPFVATPEMACRFGDERTGTVVPATLISARSLMCAVPALLGVQGRDDREDGDGGDALGRSVEVEATLDGINWTRSNLTYHFCPPHEDLLDACLTAHGNCGPGWTGRRCDIECPGGAENACHRRGVCTPRSEGVSGMAGEKEEAVCLCSRGYQGLACDVKIQTAFEGNLPPTTSIQSLQGASSLESGTPDTYSHQTSARRRGVLLGAGACFLLIVIVGVGVCVKKTDVAEYVFWRLAASRFRRSRTGQEEEAFLCEGEKVSARVEGGSQVELTPSGSLVPYLPVWPCNSPQEYDEEGGVDGITIM
Sbjct:    1 MAHYDSIIFLVFLSTSNAESSLEEPMRSKYTRKYFLGAGALGRLYLVILPAVSSFIHAYHSADGSSHVCRMIHLDETRFPVLAPEAEPAKNRTLPSVTLSDTINLIPLLERDAETGLVSFGPHATLRFDAWISSSSTSEPCTPSSLVLKATSGSVKVRIPIPQASGWATDKWLTVDAPLPARHAIYNDYEIWNALSRVELDYECNNPGSSAFDTAIRAPTPAETMLSTLNENLMKIQLLRICKAVPGPSVCTITSTYEYKTECRECNCQICHKEDCGCLPSSTGHCPYGTCDACPCSPLCRCCYDSACAYKCNCESCCETRSFTSCSTAVTYGVDRLTPPAGTAEEGTHVILSASTPFVATPEMACRFGDERTGTVVPATLISARSLMCAVPALLGVQGRDDREDGDGGDALGRSVEVEATLDGINWTRSNLTYHFCPPHEDLLDACLTAHGNCGPGWTGRRCDIECPGGAENACHRRGVCTPRSEGVSGMAGEKEEAVCLCSRGYQGLACDVKIQTAFEGNLPPTTSIQSLQGASSLESGTPDTYSHQTSARRRGVLLGAGACFLLIVIVGVGVCVKKTDVAEYVFWRLAASRFRRSRTGQEEEAFLCEGEKVSARVEGGSQVELTPSGSLVPYLPVWPCNSPQEYDEEGGVDGITIM 659
The following BLAST results are available for this feature:
BLAST of EWM24334.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585105728|gb|EWM24334.1|0.000e+0100.00EGF-like region, conserved site [Nannochloropsis g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna6343rna6343Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications