rna6342, rna6342 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6342
Unique Name	rna6342
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1218
Alignment location	CM002468.1:294336..295750 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100105g16.10579.mrna
Orig protein id	gnl\|cribi\|Naga_100105g16.10579
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:294336..295750 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100105g16	gene6129	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6342	rna6342-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24340.1	cds6327	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:294336..295750-
coding sequence from alignment at CM002468.1:294336..295750-

mRNA sequence

>rna6342 ID=rna6342|Name=rna6342|organism=Nannochloropsis gaditana|type=mRNA|length=1218bp
ATGCACCGCGATACCACGAGGAGCACGGAGGTGATGGAGCGACGACGTCA
AAGGTTCCTGTCGAGGATGCCGACGCTTGCCACGTCGGATGTGGCCAAAA
CCCGCGAAAGCGGAGCCATAGAAGGAGGCAGAGGGATGAGAGAGGGAGGA
TCCACCTACACTACTACTATAAATAAGAGGGCCATTGCCCCGATTATGCC
TCCAAAAGGGGGCAGGATGAAAAAACACACCCCTTTCTTTCCGAAGGTCG
AGCGTAGTTGTTCGGACAAAGCCACGATGCTCAAGATTTTCCTCATCGGA
CTCCTCTTAAGTCTCATTCCCTTGCTCCTGAACTATGCGTCTCGCCGTGA
GTACCCCACTCCACCTTCTGGGGGGGCTGCCGTGGTGCTTTCGGGGGCCT
CCACGGGTATAGGGTACGACGCTGCCGTCCATTTGGCCGACGACTTCGTC
GTCTACGCTGGTGTTCGGAAGGAAAAAGACGCCGAAATGCTCCGGTCTGT
GGGCAAGTCTACTCTAGTACCTGTCATTTTGGACGTGACGTCGCAAGATT
CGATTGACGAGGCCTACGTAAAGATCACCGCTGATGCTGCCGAACGAGGC
ATTCCTGTGTGGGGCCTGGTGAACAACGCCGGGATCATGACAGCCTCCAC
GGTGGAGCACCACGATGTGGCTGGGATGCAAAAGATTTACGACGTGAATG
TGTGGGGTGTTTTGCGGTTGACGCAGAAATTCCTCCCCTTGCTTCGAGCG
CAGGCAGGCCGCATCGTGCAAATTTCCTCCATCGCCGGCTTCTTGACCAT
CCCACGTGCCTCCGGGTATTGTTCGAGCAAGCACGCCTTGGAGTCCTTGA
GCGACGGTTTGCGTCTGGAGCTGGCGCATTACAATGTGTCCGTCACGGTC
GTGCAACCCGGTGCGGTCCGGAGCGCTATCTTCGAGAAGAGTCAGTCTGC
CTCCCAAGCCAAATTGGCGGAGGACCCGCGAGAACTGAAAGTCTACGGGC
ACATGATCAAAGAGGGATCGACGGACTCGATCATGGCGAAGGCCGACACC
CCAGACTGCACGACGAAAGCGATTCGTCAGGCCTTGATGGACCGGTATCC
GAAGACACGGGAGGTGGTGGCGAATATCGATGGCTTGCCTGCCATCTTCG
CCCACTACATGAAGCACATGCTGCCAGACAGGGTACTGGACAAAATGCTC
CTGTCCACGTTTGCATGA

protein sequence of rna6342

>rna6342-protein ID=rna6342-protein|Name=rna6342|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
MNAIANGRMQWLSLSMLALATVGSAFIFPASRPGTRLVAEPLTKLNVVVS
ETTREGVPMPEPNVKPATDKLFVYLWIDHLGNRVYRATRNIGASPRRIQL
WNPLASDADQAYPETGDSTAPSFTKYEVLGDDNLDAWVESGFGEFDDVEP
SPVAYTIEGAEEGGARGEMEGEGQREEAKELTSEEIEASINAYNEYYPPA
SFDALVTAMQASWRTIILSRGKQGAKAMREFYRDLHKAHPELEQKVWIME
THATRSPVPEDPDTYNHWMSDEDILKMARVATDGHDDVVEFSGLEFEDSM
DGIKGEDWVTIPPPLSWFKDEAKK

mRNA from alignment at CM002468.1:294336..295750-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6342 ID=rna6342|Name=rna6342|organism=Nannochloropsis gaditana|type=mRNA|length=1415bp|location=Sequence derived from alignment at CM002468.1:294336..295750- (Nannochloropsis gaditana)
ATGAACGCAATTGCAAACGGAAGGATGCAGTGGTTGTCTCTGTCAATGCT
GGCTTTAGCCACGGTGGGCAGCGCCTTTATCTTCCCCGCCAGCCGCCCAG
GCACAAGACTGGTCGCAGGTAATAGCACCGAGAAGCACTTGTTCGATAGC
CTCCGAATCGATGAGATGGGAGGGGTTCTCTTGCTGGCCACCAAAGTCGT
CGCCTTGACCTTGTCCTTCCCTCACTTCCAATTCCTGCCTCGGGTCCCAA
CCTTCCTCGCCCTCGCACAGAACCACTCACCAAGTTGAACGTCGTCGTTT
CTGAGACCACGCGTGAGGGGGTGCCCATGCCCGAACCCAACGTGAAGCCG
GCCACGGACAAGCTGTTTGTTTACTTATGGATAGACCACCTTGGAAACCG
CGTTTATCGCGCGACCCGCAACATCGGCGCTTCGCCTCGCCGCATCCAGC
TCTGGAACCCCTTGGCATCCGATGCCGATCAGGTTGGCTTTTACACCTAT
CTTTCTCTTCAACTCTCATAAGGTTCTCTTTTCTATCCGTCGCTTATCAT
CAGCTGCTTGTCCCTTCCTTCCTCCCTCCCTTCATCCTCCCTCCTCCCCG
CCCTCTCAGGCATACCCGGAAACCGGCGACTCCACGGCCCCAAGCTTCAC
CAAATACGAGGTCTTGGGCGACGATAACCTGGACGCATGGGTAGAGAGCG
GTTTTGGAGAGTTCGACGACGTGGAGCCTTCCCCCGTGGCCTACACCATT
GAAGGCGCCGAAGAGGGCGGGGCGCGGGGGGAGATGGAGGGCGAGGGCCA
ACGGGAGGAGGCCAAGGAGCTGACCTCGGAGGAAATCGAGGCCTCCATCA
ACGCCTACAACGAGTACTACCCACCTGCCTCCTTTGACGCCCTGGTCACG
GCCATGCAGGCAAGCTGGCGCACCATCATCCTCTCCCGGGGTAAGCAGGG
GGCCAAAGCGATGCGAGAGTTCTATCGGGATCTACACAAAGCTCACCCGG
AGCTCGAGCAGAAAGTATGGATCATGGAGACGCACGCAACGCGCTCCCCT
GTCCCGGAGGATCCGGACACGTACAACCACTGGATGAGCGACGAGGATAT
ATTGAAAATGGCTCGTGTGGTGCGTAGGATGGGGGGCAGAAAAAGACATG
GGAGTGTGTGTCTTGAACCCGTTTTGACGGCGTCAATGGATGGTTCCATG
AGATGTCGCTTGTCTGGCGGCAACGATGCTCAAATCAATGCACATCCTGA
CGGCAACTCCCTTCCCTTTATTCCTCTCAGGCGACGGACGGGCACGACGA
CGTGGTGGAGTTCTCGGGCCTGGAATTTGAAGACTCGATGGACGGGATCA
AGGGGGAGGACTGGGTAACCATTCCACCCCCTTTGTCGTGGTTCAAGGAC
GAAGCGAAGAAATGA

Coding sequence (CDS) from alignment at CM002468.1:294336..295750-

>rna6342 ID=rna6342|Name=rna6342|organism=Nannochloropsis gaditana|type=CDS|length=3900bp|location=Sequence derived from alignment at CM002468.1:294336..295750- (Nannochloropsis gaditana)
GCGACGGACGGGCACGACGACGTGGTGGAGTTCTCGGGCCTGGAATTTGA
AGACTCGATGGACGGGATCAAGGGGGAGGACTGGGTAACCATTCCACCCC
CTTTGTCGTGGTTCAAGGACGAAGCGAAGAAATGAGCATACCCGGAAACC
GGCGACTCCACGGCCCCAAGCTTCACCAAATACGAGGTCTTGGGCGACGA
TAACCTGGACGCATGGGTAGAGAGCGGTTTTGGAGAGTTCGACGACGTGG
AGCCTTCCCCCGTGGCCTACACCATTGAAGGCGCCGAAGAGGGCGGGGCG
CGGGGGGAGATGGAGGGCGAGGGCCAACGGGAGGAGGCCAAGGAGCTGAC
CTCGGAGGAAATCGAGGCCTCCATCAACGCCTACAACGAGTACTACCCAC
CTGCCTCCTTTGACGCCCTGGTCACGGCCATGCAGGCAAGCTGGCGCACC
ATCATCCTCTCCCGGGGTAAGCAGGGGGCCAAAGCGATGCGAGAGTTCTA
TCGGGATCTACACAAAGCTCACCCGGAGCTCGAGCAGAAAGTATGGATCA
TGGAGACGCACGCAACGCGCTCCCCTGTCCCGGAGGATCCGGACACGTAC
AACCACTGGATGAGCGACGAGGATATATTGAAAATGGCTCGTGTGAACCA
CTCACCAAGTTGAACGTCGTCGTTTCTGAGACCACGCGTGAGGGGGTGCC
CATGCCCGAACCCAACGTGAAGCCGGCCACGGACAAGCTGTTTGTTTACT
TATGGATAGACCACCTTGGAAACCGCGTTTATCGCGCGACCCGCAACATC
GGCGCTTCGCCTCGCCGCATCCAGCTCTGGAACCCCTTGGCATCCGATGC
CGATCAGATGAACGCAATTGCAAACGGAAGGATGCAGTGGTTGTCTCTGT
CAATGCTGGCTTTAGCCACGGTGGGCAGCGCCTTTATCTTCCCCGCCAGC
CGCCCAGGCACAAGACTGGTCGCAGGCGACGGACGGGCACGACGACGTGG
TGGAGTTCTCGGGCCTGGAATTTGAAGACTCGATGGACGGGATCAAGGGG
GAGGACTGGGTAACCATTCCACCCCCTTTGTCGTGGTTCAAGGACGAAGC
GAAGAAATGAGCATACCCGGAAACCGGCGACTCCACGGCCCCAAGCTTCA
CCAAATACGAGGTCTTGGGCGACGATAACCTGGACGCATGGGTAGAGAGC
GGTTTTGGAGAGTTCGACGACGTGGAGCCTTCCCCCGTGGCCTACACCAT
TGAAGGCGCCGAAGAGGGCGGGGCGCGGGGGGAGATGGAGGGCGAGGGCC
AACGGGAGGAGGCCAAGGAGCTGACCTCGGAGGAAATCGAGGCCTCCATC
AACGCCTACAACGAGTACTACCCACCTGCCTCCTTTGACGCCCTGGTCAC
GGCCATGCAGGCAAGCTGGCGCACCATCATCCTCTCCCGGGGTAAGCAGG
GGGCCAAAGCGATGCGAGAGTTCTATCGGGATCTACACAAAGCTCACCCG
GAGCTCGAGCAGAAAGTATGGATCATGGAGACGCACGCAACGCGCTCCCC
TGTCCCGGAGGATCCGGACACGTACAACCACTGGATGAGCGACGAGGATA
TATTGAAAATGGCTCGTGTGAACCACTCACCAAGTTGAACGTCGTCGTTT
CTGAGACCACGCGTGAGGGGGTGCCCATGCCCGAACCCAACGTGAAGCCG
GCCACGGACAAGCTGTTTGTTTACTTATGGATAGACCACCTTGGAAACCG
CGTTTATCGCGCGACCCGCAACATCGGCGCTTCGCCTCGCCGCATCCAGC
TCTGGAACCCCTTGGCATCCGATGCCGATCAGATGAACGCAATTGCAAAC
GGAAGGATGCAGTGGTTGTCTCTGTCAATGCTGGCTTTAGCCACGGTGGG
CAGCGCCTTTATCTTCCCCGCCAGCCGCCCAGGCACAAGACTGGTCGCAG
GCGACGGACGGGCACGACGACGTGGTGGAGTTCTCGGGCCTGGAATTTGA
AGACTCGATGGACGGGATCAAGGGGGAGGACTGGGTAACCATTCCACCCC
CTTTGTCGTGGTTCAAGGACGAAGCGAAGAAATGAGCATACCCGGAAACC
GGCGACTCCACGGCCCCAAGCTTCACCAAATACGAGGTCTTGGGCGACGA
TAACCTGGACGCATGGGTAGAGAGCGGTTTTGGAGAGTTCGACGACGTGG
AGCCTTCCCCCGTGGCCTACACCATTGAAGGCGCCGAAGAGGGCGGGGCG
CGGGGGGAGATGGAGGGCGAGGGCCAACGGGAGGAGGCCAAGGAGCTGAC
CTCGGAGGAAATCGAGGCCTCCATCAACGCCTACAACGAGTACTACCCAC
CTGCCTCCTTTGACGCCCTGGTCACGGCCATGCAGGCAAGCTGGCGCACC
ATCATCCTCTCCCGGGGTAAGCAGGGGGCCAAAGCGATGCGAGAGTTCTA
TCGGGATCTACACAAAGCTCACCCGGAGCTCGAGCAGAAAGTATGGATCA
TGGAGACGCACGCAACGCGCTCCCCTGTCCCGGAGGATCCGGACACGTAC
AACCACTGGATGAGCGACGAGGATATATTGAAAATGGCTCGTGTGAACCA
CTCACCAAGTTGAACGTCGTCGTTTCTGAGACCACGCGTGAGGGGGTGCC
CATGCCCGAACCCAACGTGAAGCCGGCCACGGACAAGCTGTTTGTTTACT
TATGGATAGACCACCTTGGAAACCGCGTTTATCGCGCGACCCGCAACATC
GGCGCTTCGCCTCGCCGCATCCAGCTCTGGAACCCCTTGGCATCCGATGC
CGATCAGATGAACGCAATTGCAAACGGAAGGATGCAGTGGTTGTCTCTGT
CAATGCTGGCTTTAGCCACGGTGGGCAGCGCCTTTATCTTCCCCGCCAGC
CGCCCAGGCACAAGACTGGTCGCAGGCGACGGACGGGCACGACGACGTGG
TGGAGTTCTCGGGCCTGGAATTTGAAGACTCGATGGACGGGATCAAGGGG
GAGGACTGGGTAACCATTCCACCCCCTTTGTCGTGGTTCAAGGACGAAGC
GAAGAAATGAGCATACCCGGAAACCGGCGACTCCACGGCCCCAAGCTTCA
CCAAATACGAGGTCTTGGGCGACGATAACCTGGACGCATGGGTAGAGAGC
GGTTTTGGAGAGTTCGACGACGTGGAGCCTTCCCCCGTGGCCTACACCAT
TGAAGGCGCCGAAGAGGGCGGGGCGCGGGGGGAGATGGAGGGCGAGGGCC
AACGGGAGGAGGCCAAGGAGCTGACCTCGGAGGAAATCGAGGCCTCCATC
AACGCCTACAACGAGTACTACCCACCTGCCTCCTTTGACGCCCTGGTCAC
GGCCATGCAGGCAAGCTGGCGCACCATCATCCTCTCCCGGGGTAAGCAGG
GGGCCAAAGCGATGCGAGAGTTCTATCGGGATCTACACAAAGCTCACCCG
GAGCTCGAGCAGAAAGTATGGATCATGGAGACGCACGCAACGCGCTCCCC
TGTCCCGGAGGATCCGGACACGTACAACCACTGGATGAGCGACGAGGATA
TATTGAAAATGGCTCGTGTGAACCACTCACCAAGTTGAACGTCGTCGTTT
CTGAGACCACGCGTGAGGGGGTGCCCATGCCCGAACCCAACGTGAAGCCG
GCCACGGACAAGCTGTTTGTTTACTTATGGATAGACCACCTTGGAAACCG
CGTTTATCGCGCGACCCGCAACATCGGCGCTTCGCCTCGCCGCATCCAGC
TCTGGAACCCCTTGGCATCCGATGCCGATCAGATGAACGCAATTGCAAAC
GGAAGGATGCAGTGGTTGTCTCTGTCAATGCTGGCTTTAGCCACGGTGGG
CAGCGCCTTTATCTTCCCCGCCAGCCGCCCAGGCACAAGACTGGTCGCAG

Synonyms

Publications