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Properties
| Property Name | Value |
|---|
| Product | phytanoyl- dioxygenase domain-containing protein |
| Orig transcript id | gnl|cribi|Naga_100105g18.10586.mrna |
| Orig protein id | gnl|cribi|Naga_100105g18.10586 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002468.1 | supercontig | CM002468.1:290264..292151 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna6340 ID=rna6340|Name=rna6340|organism=Nannochloropsis gaditana|type=mRNA|length=1078bp
CGGGTCGCTGAAACGTCCCTAAGGCCAGATTTTCGGAGTCTTTCCGCACG
GGGACACAGGGCTACATTACTTGCTAGGGCGTCCGACTTCGCGAGTATAT
CGAACAGGGTCAAGAGTGTGGTGAGATTCGATGAGAGTCAGTGAGATAGT
GTATGCTGGGCTCTACTGTGTGCGACCTCAATGGATCAAAAACGAGAAAG
AAGGATGAGCAAACGCACGAAAAATCTGATTCTGCGAAAATGACGAGCGG
GTCCCCTCTTCCTTTGTGCTACTGTGCGTAGTTACTTAGCATAAAGAAGG
CAGGGGCTGAATGTCTCATTGCTACGTTCCACTTGTAATAGTGGACGCAT
TACCGACGAAATGTGCCAGCCAGATGCCTCTGAATTCTCCTACATTTTCG
ATGACTGATAACATAACAATATCTCCTCCGACGTACCACTTAAGACGATG
GGGTCCTTGACAGACCAAAACACGGCTGGGACGGACGAGCTTCTGCGGCA
ACTCAAAATCAAAGTGGGAGTGGCAAGAAGGCTTATCAAAGAAGCTGCCT
CATACGAGAAGGAAGCAGCCGCTCAGGAACAGAAAATAGCGGGCATGCGG
ACCGAAGGCCGGGACAGCTATGACATCAAAAAGCAAGAAGAGGTACTCCA
AGAGTCTTATATGATGATCCCCGACAGCAAATCCCGCCTGCAAGCAGCCT
TGGAACATTTGGCGGCATTCCTGACACAGAGCCGAGATGTCAAGGAGGTG
CAGGAATCCGATGTCTATGCCGAGGCCAATGAGCTAGCCACCCAACTCGT
TACCGCTGACAGTTCAGGGTGATCAAAGAAAGGTGTATTAAGGGAGACTG
TAAGAAATTAACACAAAGGAAGGGAGGGAGGATTGAAGAAGGATGAATAA
GGATAATCTAGTGAGGACGGAGGAGATGAAGGGCTCAATTGGTCAACGAC
ATAAAAGAAAACGTGCTGACATCCTCTGTAGAGAAAGACAAAGTGGAAGG
GAAGTATGGAGTGCTGCCAGCAGGAACAAGACGGGCGGTTCAAAATGAAA
ACAAATCACACACAGACGTCGCGCATCT back to topprotein sequence of rna6340 >rna6340-protein ID=rna6340-protein|Name=rna6340|organism=Nannochloropsis gaditana|type=polypeptide|length=470bp
MDVVDNAGSFAFEKQIQTLKTRSAATMNVDPPPWLTRPYSTQGPLNKKEL
DHFFQEGYLIKRDVFAPSELQPVMDDIDSQVDALAHKLLQAGRITDVCPS
LGFYRRMAAIEAQCPGASVLLHKNPDLPPSFRALWSDPRLLDIAQQLLGG
PSVPVAGHPVWNLRVKVPQTASSVVPWHQDAAYLDPEAAATLEVASRLSP
PPYLPATPDFSLSSPTPSVLPFSSSQVTAWIPLLDANAANGCLQVMRRAH
QSGRTARHTCCVGGTWYVEMDLDDASSRLGMDCRDESFWDTCEVPLGSVL
FLSNLIPHRSLPNVSAHIRWSIDLRWQDAREPAGFWGIKDMVLMREGGKE
GGTREGYLVDWDGFLAVDRGEAQSQAAARAKRAGEGGQDGGKVEGREIEG
EGESGKDMVLAAAAAASDALTPVISGPWMLRWDLVHHNAHTAGFGGRAGG
RAGGREGGGARGMAQGLTEE back to topmRNA from alignment at CM002468.1:290264..292151+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna6340 ID=rna6340|Name=rna6340|organism=Nannochloropsis gaditana|type=mRNA|length=1888bp|location=Sequence derived from alignment at CM002468.1:290264..292151+ (Nannochloropsis gaditana)
gggagaaagagggctgAAATTAACCTCCTCACTGCCCGCCCCATCTGTGT
GAGTGTTCCTGACGAGTTCAACACCCTCGCTTTGGGATTTCAAACTCCCT
TTGACCACATATTCCATAAAATTTACAGATTTATCGGATAAATCGATGGA
TGTGGTCGACAATGCCGGCTCGTTTGCTTTCGAAAAGCAAATACAAACCC
TGAAAACCCGGAGCGCAGCGACTATGAATGTGGACCCCCCCCCGTGGCTA
ACGAGGCCCTATAGCACGCAAGGTCCTTtgaacaagaaggaggtgagaCA
ATACTAATCTGTTTGATGTATATTTTAGACCGATTCTCGAAGATCGAGCT
GCACGTGTCTCGCAAGACCCTGCGTTGCTTGACCCTAACGTTTGCCAAAA
TAATTTCTATGTATTCCTTACTTTACACTTTGGCCGCCAACACAACGCTA
TATTGTAGCTGGATCATTTTTTCCAGGAGGGATACTTGATAAAACGTGAC
GTCTTCGCGCCTTCGGAGCTGCAACCGGTCATGGACGACATCGACAGCCA
GGTCGACGCTCTTGCCCACAAACTCCTCCAGGCCGGGCGCATCACCGAcg
tctgtccctccctcggcttcTACCGACGCATGGCCGCAATAGAGGCACAA
TGCCCAGGGGCtagcgtcctcctccacaaaaACCCCGACCTGCCGCCGTC
CTTCCGAGCCCTATGGTCCGACCCTCGCCTGCTCGACATCGCTCAACAGC
TGTTGGGGGGCCCCTCCGTGCCTGTAGCCGGTCACCCCGTCTGGAATTTG
CGGGTGAAGGTCCCACAAACCGCCTCCTCTGTTGTGCCCTGGCACCAGGA
CGCGGCCTACCTGGacccggaggcggccgccaccCTGGAGGTAGCTTCTC
gtctgtctcctccgccgtacctccccgccacgcctgacttctccctttcc
tctcccacgccctccgtccttcctttctcttcctcacAGGTCACCGCTTG
GATCCCCCTCTTGGATGCTAACGCCGCCAACGGCTGCTTGCAAGTGATGC
GGCGGGCCCATCAATCGGGACGGACGGCCCGGCATACGTGCTGCGTCGGC
GGTACCTGGTATGTGGAGATGGACCTGGATGACGCCTCCTCACGGCTGGG
GATGGACTGCCGCGACGAATCCTTCTGGGACACCTGCGAGGTCCCCTTGG
GCTCAGTGCTGTTCTTAAGGTACAAGGATCCGTGATCCATATTGCCCGCG
TGTCCTCTGCCGGCgcggcttccctcctctcttcttccttccttccttcc
accctaGTCCAGGCTGCCCTCGCTGATAAACTTTCGATTTGACcctcact
ctccctccctccctcccttcctccctccggcagTAATCTCATCCCGCACC
GGTCCCTCCCCAACGTCTCCGCACACATCCGCTGGAGCATCGACCTTCGT
TGGCAGGATGCCCGGGAGCCCGCTGGCTTCTGGGGCATCAAGGACATGGT
cctgatgagggagggagggaaggagggaggaacgcgCGAGGGCTACCTGG
TGGATTGGGATGGTTTCTTGGCCGTGGATCGAGGGGAGGCGCAGAGTCAG
GCGGCGGCGCGGGCCAagcgggcaggggaaggaggacaggacggagggaa
agtggagggaagggagatcgagggggagggagagagcgggaaggacatgg
ttttggcagcagcagcggcggcatcAGATGCCTTGACGCCTGTCATTTCT
GGCCCGTGGATGTTGCGCTGGGATCTGGTTCACCACAATGCGCATACGGC
GGGGtttggagggcgggcgggagggcgggcgggagggcgggagggaggcg
gggcccgTGGCATGGCACAAGGCCTGACGGAGGAgtag back to topCoding sequence (CDS) from alignment at CM002468.1:290264..292151+ >rna6340 ID=rna6340|Name=rna6340|organism=Nannochloropsis gaditana|type=CDS|length=4239bp|location=Sequence derived from alignment at CM002468.1:290264..292151+ (Nannochloropsis gaditana)
ATGGATGTGGTCGACAATGCCGGCTCGTTTGCTTTCGAAAAGCAAATACA
AACCCTGAAAACCCGGAGCGCAGCGACTATGAATGTGGACCCCCCCCCGT
GGCTAACGAGGCCCTATAGCACGCAAGGTCCTTtgaacaagaaggagCTG
GATCATTTTTTCCAGGAGGGATACTTGATAAAACGTGACGTCTTCGCGCC
TTCGGAGCTGCAACCGGTCATGGACGACATCGACAGCCAGGTCGACGCTC
TTGCCCACAAACTCCTCCAGGCCGGGCGCATCACCGAcgtctgtccctcc
ctcggcttcTACCGACGCATGGCCGCAATAGAGGCACAATGCCCAGGGGC
tagcgtcctcctccacaaaaACCCCGACCTGCCGCCGTCCTTCCGAGCCC
TATGGTCCGACCCTCGCCTGCTCGACATCGCTCAACAGCTGTTGGGGGGC
CCCTCCGTGCCTGTAGCCGGTCACCCCGTCTGGAATTTGCGGGTGAAGGT
CCCACAAACCGCCTCCTCTGTTGTGCCCTGGCACCAGGACGCGGCCTACC
TGGacccggaggcggccgccaccCTGGAGGTAGCTTCTCgtctgtctcct
ccgccgtacctccccgccacgcctgacttctccctttcctctcccacgcc
ctccgtccttcctttctcttcctcacAGGTCACCGCTTGGATCCCCCTCT
TGGATGCTAACGCCGCCAACGGCTGCTTGCAAGTGATGCGGCGGGCCCAT
CAATCGGGACGGACGGCCCGGCATACGTGCTGCGTCGGCGGTACCTGGTA
TGTGGAGATGGACCTGGATGACGCCTCCTCACGGCTGGGGATGGACTGCC
GCGACGAATCCTTCTGGGACACCTGCGAGGTCCCCTTGGGCTCAGTGCTG
TTCTTAAGTAATCTCATCCCGCACCGGTCCCTCCCCAACGTCTCCGCACA
CATCCGCTGGAGCATCGACCTTCGTTGGCAGGATGCCCGGGAGCCCGCTG
GCTTCTGGGGCATCAAGGACATGGTcctgatgagggagggagggaaggag
ggaggaacgcgCGAGGGCTACCTGGTGGATTGGGATGGTTTCTTGGCCGT
GGATCGAGGGGAGGCGCAGAGTCAGGCGGCGGCGCGGGCCAagcgggcag
gggaaggaggacaggacggagggaaagtggagggaagggagatcgagggg
gagggagagagcgggaaggacatggttttggcagcagcagcggcggcatc
AGATGCCTTGACGCCTGTCATTTCTGGCCCGTGGATGTTGCGCTGGGATC
TGGTTCACCACAATGCGCATACGGCGGGGtttggagggcgggcgggaggg
cgggcgggagggcgggagggaggcggggcccgTGGCATGGCACAAGGCCT
GACGGAGGAgtagATGGATGTGGTCGACAATGCCGGCTCGTTTGCTTTCG
AAAAGCAAATACAAACCCTGAAAACCCGGAGCGCAGCGACTATGAATGTG
GACCCCCCCCCGTGGCTAACGAGGCCCTATAGCACGCAAGGTCCTTtgaa
caagaaggagCTGGATCATTTTTTCCAGGAGGGATACTTGATAAAACGTG
ACGTCTTCGCGCCTTCGGAGCTGCAACCGGTCATGGACGACATCGACAGC
CAGGTCGACGCTCTTGCCCACAAACTCCTCCAGGCCGGGCGCATCACCGA
cgtctgtccctccctcggcttcTACCGACGCATGGCCGCAATAGAGGCAC
AATGCCCAGGGGCtagcgtcctcctccacaaaaACCCCGACCTGCCGCCG
TCCTTCCGAGCCCTATGGTCCGACCCTCGCCTGCTCGACATCGCTCAACA
GCTGTTGGGGGGCCCCTCCGTGCCTGTAGCCGGTCACCCCGTCTGGAATT
TGCGGGTGAAGGTCCCACAAACCGCCTCCTCTGTTGTGCCCTGGCACCAG
GACGCGGCCTACCTGGacccggaggcggccgccaccCTGGAGGTAGCTTC
TCgtctgtctcctccgccgtacctccccgccacgcctgacttctcccttt
cctctcccacgccctccgtccttcctttctcttcctcacAGGTCACCGCT
TGGATCCCCCTCTTGGATGCTAACGCCGCCAACGGCTGCTTGCAAGTGAT
GCGGCGGGCCCATCAATCGGGACGGACGGCCCGGCATACGTGCTGCGTCG
GCGGTACCTGGTATGTGGAGATGGACCTGGATGACGCCTCCTCACGGCTG
GGGATGGACTGCCGCGACGAATCCTTCTGGGACACCTGCGAGGTCCCCTT
GGGCTCAGTGCTGTTCTTAAGTAATCTCATCCCGCACCGGTCCCTCCCCA
ACGTCTCCGCACACATCCGCTGGAGCATCGACCTTCGTTGGCAGGATGCC
CGGGAGCCCGCTGGCTTCTGGGGCATCAAGGACATGGTcctgatgaggga
gggagggaaggagggaggaacgcgCGAGGGCTACCTGGTGGATTGGGATG
GTTTCTTGGCCGTGGATCGAGGGGAGGCGCAGAGTCAGGCGGCGGCGCGG
GCCAagcgggcaggggaaggaggacaggacggagggaaagtggagggaag
ggagatcgagggggagggagagagcgggaaggacatggttttggcagcag
cagcggcggcatcAGATGCCTTGACGCCTGTCATTTCTGGCCCGTGGATG
TTGCGCTGGGATCTGGTTCACCACAATGCGCATACGGCGGGGtttggagg
gcgggcgggagggcgggcgggagggcgggagggaggcggggcccgTGGCA
TGGCACAAGGCCTGACGGAGGAgtagATGGATGTGGTCGACAATGCCGGC
TCGTTTGCTTTCGAAAAGCAAATACAAACCCTGAAAACCCGGAGCGCAGC
GACTATGAATGTGGACCCCCCCCCGTGGCTAACGAGGCCCTATAGCACGC
AAGGTCCTTtgaacaagaaggagCTGGATCATTTTTTCCAGGAGGGATAC
TTGATAAAACGTGACGTCTTCGCGCCTTCGGAGCTGCAACCGGTCATGGA
CGACATCGACAGCCAGGTCGACGCTCTTGCCCACAAACTCCTCCAGGCCG
GGCGCATCACCGAcgtctgtccctccctcggcttcTACCGACGCATGGCC
GCAATAGAGGCACAATGCCCAGGGGCtagcgtcctcctccacaaaaACCC
CGACCTGCCGCCGTCCTTCCGAGCCCTATGGTCCGACCCTCGCCTGCTCG
ACATCGCTCAACAGCTGTTGGGGGGCCCCTCCGTGCCTGTAGCCGGTCAC
CCCGTCTGGAATTTGCGGGTGAAGGTCCCACAAACCGCCTCCTCTGTTGT
GCCCTGGCACCAGGACGCGGCCTACCTGGacccggaggcggccgccaccC
TGGAGGTAGCTTCTCgtctgtctcctccgccgtacctccccgccacgcct
gacttctccctttcctctcccacgccctccgtccttcctttctcttcctc
acAGGTCACCGCTTGGATCCCCCTCTTGGATGCTAACGCCGCCAACGGCT
GCTTGCAAGTGATGCGGCGGGCCCATCAATCGGGACGGACGGCCCGGCAT
ACGTGCTGCGTCGGCGGTACCTGGTATGTGGAGATGGACCTGGATGACGC
CTCCTCACGGCTGGGGATGGACTGCCGCGACGAATCCTTCTGGGACACCT
GCGAGGTCCCCTTGGGCTCAGTGCTGTTCTTAAGTAATCTCATCCCGCAC
CGGTCCCTCCCCAACGTCTCCGCACACATCCGCTGGAGCATCGACCTTCG
TTGGCAGGATGCCCGGGAGCCCGCTGGCTTCTGGGGCATCAAGGACATGG
TcctgatgagggagggagggaaggagggaggaacgcgCGAGGGCTACCTG
GTGGATTGGGATGGTTTCTTGGCCGTGGATCGAGGGGAGGCGCAGAGTCA
GGCGGCGGCGCGGGCCAagcgggcaggggaaggaggacaggacggaggga
aagtggagggaagggagatcgagggggagggagagagcgggaaggacatg
gttttggcagcagcagcggcggcatcAGATGCCTTGACGCCTGTCATTTC
TGGCCCGTGGATGTTGCGCTGGGATCTGGTTCACCACAATGCGCATACGG
CGGGGtttggagggcgggcgggagggcgggcgggagggcgggagggaggc
ggggcccgTGGCATGGCACAAGGCCTGACGGAGGAgtag back to top
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