rna634, rna634 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna634
Unique Name	rna634
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1392
Alignment location	CM002456.1:47934..50240 -

Link to JBrowse

Properties


Property Name	Value
Product	hnh endonuclease
Orig transcript id	gnl\|cribi\|Naga_100179g7.5427.mrna
Orig protein id	gnl\|cribi\|Naga_100179g7.5427
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002456.1	supercontig	CM002456.1:47934..50240 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100179g7	gene609	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30039.1	cds634	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna634	rna634-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002456.1:47934..50240-
coding sequence from alignment at CM002456.1:47934..50240-

mRNA sequence

>rna634 ID=rna634|Name=rna634|organism=Nannochloropsis gaditana|type=mRNA|length=1392bp
ATGGCATACATAAGCAACATCGATTTGAACGTCATGTTTTTATCCGCTGC
AGTACGCGTGGCGTTATTGGCCCTCCTTGGGTTTTCGACGCAGACAGACT
CGGCCACTATCCCCGGGGCTAGCACTGTTAAAACGACGACGCACGCGTGG
AGCACGCCAGGGGGGCACCATTATCAGGGAGTGCTCTCGTCTAATGCCGT
CTCGAGCGAGCTATGCGATCCATCCGTGGAGAGCGTCTCGGGATATTTCA
ACATCACAGGCACCAGGGAAGCCGCCTACTTTTACTGGCTCTTCGAGAGC
CGGGCCGACCCCCGCTCGGACCCGCTGATCGTGTGGCTGACGGGGGGACC
GGGCTGCTCCTCCATCCTCGCCCTCTTTGTGGAAAATGGACCGTGTTATG
TGAACGAATGGGGCAACGGAACGGTTTTGAACCCGGACAGTTGGAACAGC
AATGCCAACATTCTTTGGATCGATCAGCCCGTCGGAGTCGGCTTCAGCTA
TGGGGAAAGGGCTGACTACGTGGACGGAGAGGAGGGGGTAGGGGAAGACC
TGTACCAGTTCCTTCAAGCCTTTTTTAAGGCGAATGAGAAGTATCAAGAG
CTGGCTTTCTTCATTTTTGGGGAGAGCTACGGGGGGCATTACGCACCGGC
AGCCGGGCATCGTGTTTGGGAAGGCAACCAGGATCTGGTTCAGGGCGACG
TCTATATCAACTTGCAGGGTATCGGCATCGGAAACGGGCTGACTGATCCC
GAGATCCAGTATGCTTATTACCCACAGATGAGCTACAACAACTCATACGG
CATTCAGGCTGTAGACGAGGAAACATTTAACGACATGCAGGACGCCGTGC
CCACTTGCCTCCACCTCATTCACCGGTGCCAGCATAATGGAGGAGAGGAC
TTTGCCTGCTCTGTCGCCCAAGTCTACTGCAACGCAGCGATCGAGAGCAA
GTACGTCGAAACTGGTTTGAATGTGTATGACATTCGAATCCCTTGTGAAG
TGCCGGGGCTGTGCTACGATTTCAGTCGCGTCGAGACTTTCCTCCAGAAC
CCTGAGGTTCTCTGTGCCCTGGGCGTTTCTCCCAAAGCCGGAGAATGGCA
GAGCTGCAATATGGAGGTAAACAAGGATTTCCGCGCTGATTTCATGAAGA
ACATGCAAGACAAGCTCGTGCCCCTCGTGGATAGTGGAGTGGCCGTTCTT
ATCTATGCTGGCGACGCTGACTTCATCTGCAACTGGTATGGCAACGAAGC
ATGGACGCGAGCCTTGGAATGGACAGGGCAAGATGAATTCCTCGTAGCAG
AAGACATGCCGTGGAAGCTTAGCGATGGTGTGGAGGCGGGGATGGTGCGC
ACGGCCAAGGGCTTTACTTTCCTGCGGGTGTACGGCGCGTAA

protein sequence of rna634

>rna634-protein ID=rna634-protein|Name=rna634|organism=Nannochloropsis gaditana|type=polypeptide|length=646bp
MEDCEDEDLIDLTGTGEGNFCVTARAQKQLRLRNTAVRNGTGTDCAAKAL
TQNHVPKLVSIDGDFSKAPCIFAVAAPCSRTEGPFQGERVPVNRLHEDAG
TASTNVTECSLNQGERESGGEEKEDYDEKKGARLGDAVWIGDATPKAFSL
SPVDLTSPPYDTRASKRRKSEHGRISDVDISPASWTRRSAGCDGAQDTYL
GESTLPVTSGGKMCVEDPRPGEGGVSETIKRGTTNRRARELSVDGGETRV
EHSGAGKALGCGDDIDYLGPPSPISISSSSSTSSPSSPPFPPSRQPLPAA
LRLHPDSPSIHAENGEENPEELATRPAAELRAHLRALGVPATGRTKAQLA
IRLHACLRARRLANFPSHSTDRYSDRRGKVNKADLARGDHGRALCRLCQQ
ECPKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALY
LHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKC
QVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGG
LRGLENFRTLCVACHQTATAELRRRRQGEIAGGRNAGSKERLNSQAGSER
REEDKEAEEDGEKETEDLEDEDAKDEGEGGAQKTGKGDCVEIKQQK

mRNA from alignment at CM002456.1:47934..50240-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna634 ID=rna634|Name=rna634|organism=Nannochloropsis gaditana|type=mRNA|length=2307bp|location=Sequence derived from alignment at CM002456.1:47934..50240- (Nannochloropsis gaditana)
GATCCTGCATGTCGCCAAAACGCTGTTGGACTGCTTCATGTGTCGCTGGA
TTAACCCATCTTACCAGCCCGTATCGCTATCCCACTACAATACATCCTGA
CACAAAAGTGGTATGAGGAATGGAGGACTGCGAGGATGAAGACTTGATCG
ATCTTACTGGAACTGGTGAAGGCAATTTCTGCGTTACCGCAAGGGCTCAG
AAGCAGTTACGACTCAGAAACACAGCAGTGCGAAATGGGACTGGAACTGA
TTGCGCCGCGAAGGCTCTTACTCAAAACCATGTCCCAAAATTGGTATCGA
TAGACGGTGATTTCTCAAAAGCACCATGCATCTTTGCGGTCGCCGCACCA
TGTTCACGAACAGAGGGACCTTTCCAAGGCGAGCGAGTTCCTGTCAACAG
ACTGCACGAAGATGCAGGGACAGCATCGACCAATGTAACGGAATGCTCCC
TGAATCAGGGAGAACGCGAGAGTGGGGGTGAAGAAAAGGAAGATTACGAT
GAGAAAAAGGGGGCCCGATTAGGTGACGCAGTGTGGATTGGAGACGCAAC
TCCCAAAGCCTTTTCACTCAGTCCGGTCGACTTGACCTCTCCACCGTACG
ACACAAGGGCCAGCAAGCGGCGCAAGAGTGAGCATGGCAGGATCAGTGAC
GTTGATATATCACCCGCTTCTTGGACGAGAAGAAGTGCTGGCTGTGATGG
TGCCCAAGATACATATCTTGGGGAAAGCACCTTGCCTGTGACGTCAGGCG
GGAAGATGTGCGTAGAGGACCCGAGGCCGGGGGAAGGCGGGGTCTCAGAG
ACCATAAAGCGTGGGACAACCAACAGGAGAGCTCGAGAACTCAGTGTCGA
TGGAGGGGAAACGCGTGTCGAACATTCGGGAGCAGGGAAGGCATTAGGGT
GTGGGGACGACATTGACTATTTGGGCCCTCCTTCTCCAATATCGATCTCC
TCCTCGTCTTCCACCTCCAGCCCCTCCTCCCCCCCCTTTCCCCCCTCACG
GCAACCCCTCCCAGCTGCGCTTCGACTGCACCCAGATTCGCCGTCCATCC
ACGCGGAAAACGGGGAGGAAAACCCAGAGGAGCTGGCCACCCGCCCCGCT
GCCGAGCTCCGGGCCCATCTCCGTGCCCTGGGTGTGCCTGCCACGGGCCG
AACCAAAGCTCAACTCGCTATCCGCCTCCATGCCTGTCTGCGTGCGCGGC
GGCTGGCAAACTTCCCTTCGCACAGCACGGATCGCTACAGCGACCGACGG
GGAAAAGTCAACAAAGCGGACCTGGCCCGAGGTGACCACGGACGGGCCCT
CTGCCGCCTCTGCCAGCAAGAATGCCCCAAGAAGGCCAATACGTTCTGCT
CGCCCGCCTGCGTGCATGAACACCGGCTTCGCACGAGCGGCTCCTACGTG
AGGAAATGTCTGCTGGTACGTGACAAGGGACGGTGCGCCCTGTGTGCGAT
CGACGCGCATGCCCTCTACTTGCATGTGCGGCGGACCTGCTGGGCAGCTG
GGTGGGGAGGAAAGGGGGAAAAGGCTTTGGGAGGGATTCAGGCGGTGGTG
GACGAAAAAGTGGCGGGCACGATATTGGAGGGCAAGGTGAAAGTCCGAGG
GCTGAAACAAGGCAAGTGTCAGGTCGGCGATGGCGTCGGCAAAGCTTGGG
TCACGTCCACCGTCTACGGGGCCCAAACGAGGCCACGCCCCCGGCGACCT
CGCCGTCCTTTCAATAGCGGGCTTTTCTGGCACGCCGACCACATCCTTCC
AGTCGTGGAAGGAGGGGGCTTGCGAGGCTTGGAGAATTTTAGGACCCTGT
GCGTGGCTTGTCACCAGACGGCCACAGCGGAGCTGCGACGCAGGCGGCAA
GGAGAGATAGCTGGAGGGAGAAATGCAGGGTCGAAGGAGCGCCTGAATAG
CCAGGCGGGGAGTGAAAGGAGGGAAGAGGACAAAGAGGCGGAGGAGGACG
GAGAGAAGGAAACGGAGGATTTGGAGGATGAGGATGCGAAAGATGAAGGA
GAAGGAGGAGCTCAGAAAACAGGCAAAGGTGATTGTGTAGAGATCAAACA
ACAAAAATAAAGGAATACGAAGGCTTGGCTGATAGAGTGGGAGATCAAAA
TGAAGCGTAGAGTACAAATAGAGGTTGGGAAGGGATAGCTTTGGTTGTAA
AAATGTAAAACGTGTATCTAACTCCCAAAACTGTGGAAAAAATCCCTGAT
CTGGTTGTCAGCATTTCGCTATCTTTTCAGTACCTGGTGTTGGCACGGGG
GCACTGTGTTTTCACTGTCATTGTCGATATTTGTCGGTACACTACTGTCG
CCTCAAG

Coding sequence (CDS) from alignment at CM002456.1:47934..50240-

>rna634 ID=rna634|Name=rna634|organism=Nannochloropsis gaditana|type=CDS|length=1941bp|location=Sequence derived from alignment at CM002456.1:47934..50240- (Nannochloropsis gaditana)
ATGGAGGACTGCGAGGATGAAGACTTGATCGATCTTACTGGAACTGGTGA
AGGCAATTTCTGCGTTACCGCAAGGGCTCAGAAGCAGTTACGACTCAGAA
ACACAGCAGTGCGAAATGGGACTGGAACTGATTGCGCCGCGAAGGCTCTT
ACTCAAAACCATGTCCCAAAATTGGTATCGATAGACGGTGATTTCTCAAA
AGCACCATGCATCTTTGCGGTCGCCGCACCATGTTCACGAACAGAGGGAC
CTTTCCAAGGCGAGCGAGTTCCTGTCAACAGACTGCACGAAGATGCAGGG
ACAGCATCGACCAATGTAACGGAATGCTCCCTGAATCAGGGAGAACGCGA
GAGTGGGGGTGAAGAAAAGGAAGATTACGATGAGAAAAAGGGGGCCCGAT
TAGGTGACGCAGTGTGGATTGGAGACGCAACTCCCAAAGCCTTTTCACTC
AGTCCGGTCGACTTGACCTCTCCACCGTACGACACAAGGGCCAGCAAGCG
GCGCAAGAGTGAGCATGGCAGGATCAGTGACGTTGATATATCACCCGCTT
CTTGGACGAGAAGAAGTGCTGGCTGTGATGGTGCCCAAGATACATATCTT
GGGGAAAGCACCTTGCCTGTGACGTCAGGCGGGAAGATGTGCGTAGAGGA
CCCGAGGCCGGGGGAAGGCGGGGTCTCAGAGACCATAAAGCGTGGGACAA
CCAACAGGAGAGCTCGAGAACTCAGTGTCGATGGAGGGGAAACGCGTGTC
GAACATTCGGGAGCAGGGAAGGCATTAGGGTGTGGGGACGACATTGACTA
TTTGGGCCCTCCTTCTCCAATATCGATCTCCTCCTCGTCTTCCACCTCCA
GCCCCTCCTCCCCCCCCTTTCCCCCCTCACGGCAACCCCTCCCAGCTGCG
CTTCGACTGCACCCAGATTCGCCGTCCATCCACGCGGAAAACGGGGAGGA
AAACCCAGAGGAGCTGGCCACCCGCCCCGCTGCCGAGCTCCGGGCCCATC
TCCGTGCCCTGGGTGTGCCTGCCACGGGCCGAACCAAAGCTCAACTCGCT
ATCCGCCTCCATGCCTGTCTGCGTGCGCGGCGGCTGGCAAACTTCCCTTC
GCACAGCACGGATCGCTACAGCGACCGACGGGGAAAAGTCAACAAAGCGG
ACCTGGCCCGAGGTGACCACGGACGGGCCCTCTGCCGCCTCTGCCAGCAA
GAATGCCCCAAGAAGGCCAATACGTTCTGCTCGCCCGCCTGCGTGCATGA
ACACCGGCTTCGCACGAGCGGCTCCTACGTGAGGAAATGTCTGCTGGTAC
GTGACAAGGGACGGTGCGCCCTGTGTGCGATCGACGCGCATGCCCTCTAC
TTGCATGTGCGGCGGACCTGCTGGGCAGCTGGGTGGGGAGGAAAGGGGGA
AAAGGCTTTGGGAGGGATTCAGGCGGTGGTGGACGAAAAAGTGGCGGGCA
CGATATTGGAGGGCAAGGTGAAAGTCCGAGGGCTGAAACAAGGCAAGTGT
CAGGTCGGCGATGGCGTCGGCAAAGCTTGGGTCACGTCCACCGTCTACGG
GGCCCAAACGAGGCCACGCCCCCGGCGACCTCGCCGTCCTTTCAATAGCG
GGCTTTTCTGGCACGCCGACCACATCCTTCCAGTCGTGGAAGGAGGGGGC
TTGCGAGGCTTGGAGAATTTTAGGACCCTGTGCGTGGCTTGTCACCAGAC
GGCCACAGCGGAGCTGCGACGCAGGCGGCAAGGAGAGATAGCTGGAGGGA
GAAATGCAGGGTCGAAGGAGCGCCTGAATAGCCAGGCGGGGAGTGAAAGG
AGGGAAGAGGACAAAGAGGCGGAGGAGGACGGAGAGAAGGAAACGGAGGA
TTTGGAGGATGAGGATGCGAAAGATGAAGGAGAAGGAGGAGCTCAGAAAA
CAGGCAAAGGTGATTGTGTAGAGATCAAACAACAAAAATAA

Synonyms

Publications