EWM30039.1, cds634 (CDS) Nannochloropsis gaditana

Overview
NameEWM30039.1
Unique Namecds634
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002456.1:48181..50121 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30039.1
Producthnh endonuclease
Orig transcript idgnl|cribi|Naga_100179g7.5427.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002456.1supercontigCM002456.1:48181..50121 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0004519endonuclease activity
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR002711HNH
Homology
BLAST of EWM30039.1 vs. NCBI_GenBank
Match: gi|585112667|gb|EWM30039.1| (hnh endonuclease [Nannochloropsis gaditana])

HSP 1 Score: 1315.83 bits (3404), Expect = 0.000e+0
Identity = 646/646 (100.00%), Postives = 646/646 (100.00%), Query Frame = 0
Query:    1 MEDCEDEDLIDLTGTGEGNFCVTARAQKQLRLRNTAVRNGTGTDCAAKALTQNHVPKLVSIDGDFSKAPCIFAVAAPCSRTEGPFQGERVPVNRLHEDAGTASTNVTECSLNQGERESGGEEKEDYDEKKGARLGDAVWIGDATPKAFSLSPVDLTSPPYDTRASKRRKSEHGRISDVDISPASWTRRSAGCDGAQDTYLGESTLPVTSGGKMCVEDPRPGEGGVSETIKRGTTNRRARELSVDGGETRVEHSGAGKALGCGDDIDYLGPPSPISISSSSSTSSPSSPPFPPSRQPLPAALRLHPDSPSIHAENGEENPEELATRPAAELRAHLRALGVPATGRTKAQLAIRLHACLRARRLANFPSHSTDRYSDRRGKVNKADLARGDHGRALCRLCQQECPKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTLCVACHQTATAELRRRRQGEIAGGRNAGSKERLNSQAGSERREEDKEAEEDGEKETEDLEDEDAKDEGEGGAQKTGKGDCVEIKQQK 646
            MEDCEDEDLIDLTGTGEGNFCVTARAQKQLRLRNTAVRNGTGTDCAAKALTQNHVPKLVSIDGDFSKAPCIFAVAAPCSRTEGPFQGERVPVNRLHEDAGTASTNVTECSLNQGERESGGEEKEDYDEKKGARLGDAVWIGDATPKAFSLSPVDLTSPPYDTRASKRRKSEHGRISDVDISPASWTRRSAGCDGAQDTYLGESTLPVTSGGKMCVEDPRPGEGGVSETIKRGTTNRRARELSVDGGETRVEHSGAGKALGCGDDIDYLGPPSPISISSSSSTSSPSSPPFPPSRQPLPAALRLHPDSPSIHAENGEENPEELATRPAAELRAHLRALGVPATGRTKAQLAIRLHACLRARRLANFPSHSTDRYSDRRGKVNKADLARGDHGRALCRLCQQECPKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTLCVACHQTATAELRRRRQGEIAGGRNAGSKERLNSQAGSERREEDKEAEEDGEKETEDLEDEDAKDEGEGGAQKTGKGDCVEIKQQK
Sbjct:    1 MEDCEDEDLIDLTGTGEGNFCVTARAQKQLRLRNTAVRNGTGTDCAAKALTQNHVPKLVSIDGDFSKAPCIFAVAAPCSRTEGPFQGERVPVNRLHEDAGTASTNVTECSLNQGERESGGEEKEDYDEKKGARLGDAVWIGDATPKAFSLSPVDLTSPPYDTRASKRRKSEHGRISDVDISPASWTRRSAGCDGAQDTYLGESTLPVTSGGKMCVEDPRPGEGGVSETIKRGTTNRRARELSVDGGETRVEHSGAGKALGCGDDIDYLGPPSPISISSSSSTSSPSSPPFPPSRQPLPAALRLHPDSPSIHAENGEENPEELATRPAAELRAHLRALGVPATGRTKAQLAIRLHACLRARRLANFPSHSTDRYSDRRGKVNKADLARGDHGRALCRLCQQECPKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTLCVACHQTATAELRRRRQGEIAGGRNAGSKERLNSQAGSERREEDKEAEEDGEKETEDLEDEDAKDEGEGGAQKTGKGDCVEIKQQK 646          
BLAST of EWM30039.1 vs. NCBI_GenBank
Match: gi|553189592|ref|XP_005855034.1| (hnh endonuclease, partial [Nannochloropsis gaditana CCMP526] >gi|422294032|gb|EKU21332.1| hnh endonuclease, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 537.339 bits (1383), Expect = 0.000e+0
Identity = 260/261 (99.62%), Postives = 260/261 (99.62%), Query Frame = 0
Query:  300 ALRLHPDSPSIHAENGEENPEELATRPAAELRAHLRALGVPATGRTKAQLAIRLHACLRARRLANFPSHSTDRYSDRRGKVNKADLARGDHGRALCRLCQQECPKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTL 560
            ALRLHPDSPSIHAENGEENPEELATRPAAELRAHLRALGVPATGRTKAQLAIRLHACLRARRLANFPSHSTDRYSDRRGKVNKADLARGDHGRALCRLCQQECPKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALC IDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTL
Sbjct:    1 ALRLHPDSPSIHAENGEENPEELATRPAAELRAHLRALGVPATGRTKAQLAIRLHACLRARRLANFPSHSTDRYSDRRGKVNKADLARGDHGRALCRLCQQECPKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCTIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTL 261          
BLAST of EWM30039.1 vs. NCBI_GenBank
Match: gi|299117036|emb|CBN73807.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 152.91 bits (385), Expect = 1.442e-37
Identity = 89/204 (43.63%), Postives = 109/204 (53.43%), Query Frame = 0
Query:  369 STDRYSDRRGKVNKADLARGDHGRALCRLCQQECPKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTLCVACHQTATAEL 572
            +  R++   G V++A + RG+ G  LCR C +E P    TFCS ACVHEHR+RT GSYVRKCLLVRD G+CA C +DA  LY   R     A W  +G   +   +AV  E V GT  EGK+  +G+                             RRP      G FWHADHI+PVV GGG   L+N+RTLCV CH  AT  L
Sbjct:  133 AQQRWNPEAGWVDRATMERGERGYPLCRFCNEEVPSARRTFCSDACVHEHRIRTQGSYVRKCLLVRDGGQCAECGVDAAGLYKRAR-----AAWICEGSVVVKR-EAVALEMV-GTPFEGKMPTKGMT----------------------------RRP----TQGKFWHADHIVPVVRGGGQCSLKNYRTLCVPCHAAATKRL 297          
BLAST of EWM30039.1 vs. NCBI_GenBank
Match: gi|1124362858|ref|WP_074652879.1| (HNH endonuclease [Terriglobus roseus] >gi|1089034896|emb|SEB61230.1| HNH endonuclease [Terriglobus roseus])

HSP 1 Score: 104.76 bits (260), Expect = 1.635e-22
Identity = 73/206 (35.44%), Postives = 96/206 (46.60%), Query Frame = 0
Query:  378 GKVNKADLARGDHGRALCRLCQQECPKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTLCVACHQTATAELRRR-RQGEIAG 582
            G V++ D  RG +GR LCR C  E PK+  TFCS  CVHE +LR+  SY+R+ +  RDKGRC  C ID  +                                           +R LK+ +    + + + W      G +TR R             W ADHI+PVVEGGG   L N RTLC+ CH+TATA LR R R+ ++A 
Sbjct:   10 GWVDRKDHPRGPNGRGLCRWCNLEVPKRRFTFCSDFCVHEWKLRSQPSYLREHVYKRDKGRCCGCGIDTMS------------------------------------------ALRSLKRSRGPRREELMRHW------GFKTRIRKS----------LWDADHIVPVVEGGGECDLANIRTLCLRCHRTATAALRERLRKAKVAA 157          
BLAST of EWM30039.1 vs. NCBI_GenBank
Match: gi|504597641|ref|WP_014784743.1| (HNH endonuclease [Terriglobus roseus] >gi|390411670|gb|AFL87174.1| HNH endonuclease [Terriglobus roseus DSM 18391])

HSP 1 Score: 103.99 bits (258), Expect = 3.072e-22
Identity = 73/206 (35.44%), Postives = 95/206 (46.12%), Query Frame = 0
Query:  378 GKVNKADLARGDHGRALCRLCQQECPKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTLCVACHQTATAELRRR-RQGEIAG 582
            G V++ D  RG +GR LCR C  E PK+  TFCS  CVHE +LR+  +Y+R  +  RDKGRC  C ID  A    ++R+                                    RG K+ +  +             +G +TR R             W ADHI+PVVEGGG   L N RTLCV CH+T TA LR R R+ ++A 
Sbjct:   10 GWVDRKDHPRGPNGRGLCRWCNLEVPKRRFTFCSDFCVHEWKLRSQPAYLRDHVYKRDKGRCCGCGIDTMAALRALKRS------------------------------------RGAKREELMLH------------WGFKTRMRKS----------LWDADHIVPVVEGGGECDLANIRTLCVRCHRTVTAALRERIRKAKVAA 157          
BLAST of EWM30039.1 vs. NCBI_GenBank
Match: gi|551213969|ref|WP_022841911.1| (HNH endonuclease [Acidobacteriaceae bacterium TAA166])

HSP 1 Score: 103.605 bits (257), Expect = 5.548e-22
Identity = 74/205 (36.10%), Postives = 93/205 (45.37%), Query Frame = 0
Query:  378 GKVNKADLARGDHGRALCRLCQQEC-PKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTLCVACHQTATAELRRR-RQGEI 580
            G   +ADL  G +G  LCR CQ E   K+  TFCS  CVH+ RLRT   Y+R  +  RD+GRCA+C ID  A Y  ++R                                G  +  GL+                  +YG +T    R           W ADHILPV EGGG   L+N RTLC+ CH+ AT++LR R RQ EI
Sbjct:   10 GSARRADLPTGPNGLPLCRWCQLEILAKRRRTFCSDYCVHQWRLRTDPGYLRDQVFARDRGRCAVCRIDTVAAYAALKRA------------------------------RGPARAAGLR------------------LYGMKTIASRRS---------LWDADHILPVAEGGGQCDLDNLRTLCLLCHREATSQLRSRLRQIEI 157          
BLAST of EWM30039.1 vs. NCBI_GenBank
Match: gi|1180594021|ref|WP_084080171.1| (HNH endonuclease [Edaphobacter aggregans])

HSP 1 Score: 99.7525 bits (247), Expect = 1.317e-20
Identity = 70/209 (33.49%), Postives = 94/209 (44.98%), Query Frame = 0
Query:  378 GKVNKADLARGDHGRALCRLCQQEC-PKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTLCVACHQTATAELRRRRQGEIAGGRN 585
            G+ ++ +L  G +G  LCR C  E   K+  TFCS  CVH+ RLRT   Y+R  +  RD+GRCA+C ID  A Y  ++R                                G  +  GL+                  +YG +T    R           W ADHILPV EGGG   L+N RTLC+ CH+ ATA+LR R + + + GR 
Sbjct:   10 GRASRHELPTGPNGLPLCRWCDLEILAKRRRTFCSDYCVHQWRLRTDPGYLRDQVFARDRGRCAVCHIDTVAAYAALKRA------------------------------RGPARAAGLR------------------LYGMKTVTSRRS---------LWDADHILPVAEGGGQCDLDNIRTLCLLCHREATAQLRARMKRQNSPGRT 161          
BLAST of EWM30039.1 vs. NCBI_GenBank
Match: gi|503344516|ref|WP_013579177.1| (HNH endonuclease [Granulicella tundricola] >gi|321162146|gb|ADW67851.1| HNH endonuclease [Granulicella tundricola MP5ACTX9])

HSP 1 Score: 98.2117 bits (243), Expect = 4.058e-20
Identity = 67/199 (33.67%), Postives = 87/199 (43.72%), Query Frame = 0
Query:  378 GKVNKADLARGDHGRALCRLCQQEC-PKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTLCVACHQTATAELRRR 575
            G++    L  G  G+ LCR C+ E   K+  TFCS  CVH+HRLRT   Y+R  +  RD G CALC  D  A+Y  ++R         +G   L G+                                        ++YG +T    R           W ADHILPV EGGG   L+N RTLC+ CH+  TA+LR R
Sbjct:   26 GRIKPKALPIGPLGKPLCRWCELEILAKRRRTFCSDYCVHQHRLRTDPGYLRDQVFARDHGLCALCQADTPAIYAALKR--------ARGASRLAGL----------------------------------------SLYGMKTITSRRS---------LWDADHILPVAEGGGQCDLDNLRTLCLPCHREVTAQLRLR 167          
BLAST of EWM30039.1 vs. NCBI_GenBank
Match: gi|504030253|ref|WP_014264247.1| (HNH endonuclease [Granulicella mallensis] >gi|358751975|gb|AEU35365.1| HNH endonuclease [Granulicella mallensis MP5ACTX8])

HSP 1 Score: 92.0485 bits (227), Expect = 4.867e-18
Identity = 64/199 (32.16%), Postives = 85/199 (42.71%), Query Frame = 0
Query:  378 GKVNKADLARGDHGRALCRLCQQEC-PKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTLCVACHQTATAELRRR 575
            G+  +A L+ G +G  LCR CQ E   ++  TFCS  CVH+ RLR+   Y+R  +  RD+G C  C  D  A Y  ++R+                               GK +V  L              W   TV   ++                W ADHI PV EGGG   L+N RTLC+ CH+ ATA+LR R
Sbjct:   13 GRAQRATLSLGPNGLPLCRWCQMEILARRRRTFCSEYCVHQWRLRSDPGYLRDQVFARDRGICTDCGTDTVAAYAALKRS------------------------------RGKARVEAL------------AVWGLKTVQARRS---------------LWDADHIRPVAEGGGQCDLDNLRTLCLPCHREATADLRLR 154          
BLAST of EWM30039.1 vs. NCBI_GenBank
Match: gi|1098154044|emb|SFS20966.1| (HNH endonuclease [Granulicella pectinivorans])

HSP 1 Score: 89.3521 bits (220), Expect = 2.995e-17
Identity = 63/194 (32.47%), Postives = 83/194 (42.78%), Query Frame = 0
Query:  378 GKVNKADLARGDHGRALCRLCQQEC-PKKANTFCSPACVHEHRLRTSGSYVRKCLLVRDKGRCALCAIDAHALYLHVRRTCWAAGWGGKGEKALGGIQAVVDEKVAGTILEGKVKVRGLKQGKCQVGDGVGKAWVTSTVYGAQTRPRPRRPRRPFNSGLFWHADHILPVVEGGGLRGLENFRTLCVACHQTATA 570
            G+ ++A L  G +G  LCR C+ E   K+  TFCS  CVH+ RLRT   Y+R  +  RDKG CALC  D  A+Y  ++R         +G             ++AG  L G   +   +                                        W ADHILPV EGGG   L+N RTLC+ CH+  TA
Sbjct:    4 GRAHRASLPVGPNGLPLCRWCELEILAKRRRTFCSEYCVHQWRLRTDPGYLRDQVFARDKGVCALCQADTLAIYNALKR--------ARGA-----------NRIAGLSLYGLASIDARRS--------------------------------------LWDADHILPVAEGGGQCDLDNLRTLCLPCHREVTA 140          
The following BLAST results are available for this feature:
BLAST of EWM30039.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112667|gb|EWM30039.1|0.000e+0100.00hnh endonuclease [Nannochloropsis gaditana][more]
gi|553189592|ref|XP_005855034.1|0.000e+099.62hnh endonuclease, partial [Nannochloropsis gaditan... [more]
gi|299117036|emb|CBN73807.1|1.442e-3743.63conserved unknown protein [Ectocarpus siliculosus][more]
gi|1124362858|ref|WP_074652879.1|1.635e-2235.44HNH endonuclease [Terriglobus roseus] >gi|10890348... [more]
gi|504597641|ref|WP_014784743.1|3.072e-2235.44HNH endonuclease [Terriglobus roseus] >gi|39041167... [more]
gi|551213969|ref|WP_022841911.1|5.548e-2236.10HNH endonuclease [Acidobacteriaceae bacterium TAA1... [more]
gi|1180594021|ref|WP_084080171.1|1.317e-2033.49HNH endonuclease [Edaphobacter aggregans][more]
gi|503344516|ref|WP_013579177.1|4.058e-2033.67HNH endonuclease [Granulicella tundricola] >gi|321... [more]
gi|504030253|ref|WP_014264247.1|4.867e-1832.16HNH endonuclease [Granulicella mallensis] >gi|3587... [more]
gi|1098154044|emb|SFS20966.1|2.995e-1732.47HNH endonuclease [Granulicella pectinivorans][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna634rna634Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications