rna6338, rna6338 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna6338
Unique Name	rna6338
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3800
Alignment location	CM002468.1:285593..286739 -

Link to JBrowse

Properties


Property Name	Value
Product	transcription factor tfiiib component
Orig transcript id	gnl\|cribi\|Naga_101773g1.5215.mrna
Orig protein id	gnl\|cribi\|Naga_101773g1.5215
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002468.1	supercontig	CM002468.1:285593..286739 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101773g1	gene6125	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24350.1	cds6323	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna6338	rna6338-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002468.1:285593..286739-
coding sequence from alignment at CM002468.1:285593..286739-

mRNA sequence

>rna6338 ID=rna6338|Name=rna6338|organism=Nannochloropsis gaditana|type=mRNA|length=3800bp
GCCACTACGGTCATCGTCTGGTACTTCCTCCCGCTCCGGCCTTTTTCTTT
CACTTTCCACTCTCAGACCAGCAGCCTTTTATCGAATGCCCTGGCCTTTT
CTCTCAGCCATGCCATCGCTGCATTTTGTGTGGCCTCGTCGTCGTCGCCG
CAGGCCCCTTTTCCTGACATGAAATTTGTGGAAATATGTACCTAGTGGTC
GGCCGCCTTACTTGTTCTGTTGGTTTTCATATTCGAGAGTAACCTCCCTC
CACGCTGACGTCGAACGACTCATTTTCTGGGTATAGGGAGCACCGGCGTC
GTGCGGGGTGCGGCTGTGAGGGCACGACAGCTGGGCGTGGCGATTAGGTG
TCGGGGAAAAAAGGGGGGATCATAGTAAGGATTGGGGAGCTCAAGTGCCA
TTCAGTCACAAAGTAGCGAAGAAAGGACGGAAAGCGTCCATATCGGGGCG
AAGTCAAGCACGCAACAAATGTACCATGGCTTCGAGGCCGAGTACGGCGG
GGTTGGCGAGGAGCTGACATATCCTCTGTGCAGGGAAGAAGAAATGGACA
CACACCCCGCGCTGGGTGGTCCCTTAGATGGGGTTTCAACAGCCATGTCC
GCTTTGAGCACTAGCTTCGCAGCGACGGGTCATGGGTCAGGGCCGGCCCA
CGAGGGCCACGCTAGCGGTGCTTTTGCTCCCCCGTCCACGGAACATGCCG
GCGTCATGTGCGCAGCTCCCATGGCCATGGGCACGGCAGACGCTAGCTCA
GTCCATCTACCCTTGGCCCATGTGGGAAGCGGGAGTAGTGGCAACAGCAG
ATACAGTGGGAGTGGCGGCGACAGCGGGAGCGTGGGGACTGGTGGCCTCC
ATCCATCCTTCTCGAGCGGCCTTCATTCCTCCTCCGGGGGGGCAGGCGGG
GGCATGCCGAATGCGGAGTTGGTTCGCGTTCGCGTCGACACTTCTGGAAA
GAAATTGCTGAGGGAAGCTGCCCTGCTGACCCGCCTGGCCGAGATACTGC
TTCCAAAGCAGGAACGAGGGAGCGAAGAGGGGAGGGGCTGGGCGGAGGGG
GATGCGGGGGCGGTCGGTTTGACAGAATGGTTGGCAGGAGAGCTTGGAAA
CGACACGAGGCGTGCTCGCTTTTTACTCGCCATGTCGGGGGAGAGGGATG
GAGAAGAGGAGGCGGTGGAGCGAGGAGGGGATGGAGGGAAGGCGCTCAGT
CGAATACGCGACGCACTCCGAGCCTACGTCGCAGGCGGGTCGCCTGCTGC
ATCCCTTTCCCACACAGCCAGCCACCACCCCCTTGCCTCCTTGGGCCCTT
CCCTCCTCCCGCCGCCCCACTTGGTCATCGTCGTCGACCACCCTCCCACA
GCGCTCGCCTTGACCCGCCGCGCCTTGGAGGCGGGGCTTCGAGTCTCTGT
GGCCCGCAATGCCCTCCACGTGCTGAGCGAGGTGATCGAGCGCGGGGAAA
CCTATTTTCACGGCTTGGTTCTGGAGGTCGACTCGCCCATTATGAGCGGG
CTGGAGGCCGCCATGAAGTTCCGAGGGCTCCCCTCCCCCCTGGTGGTGCT
GGGAGAGGGGGAGAGAGGTGCGGAGCAAGGAGGGCCCGCGGCCCAGACAG
CTGGGGCGGGGCAAGGAAGGGAGGGAAGGCGAAGAGGACTAGAAGGTAGG
GGAGGGAGCATGCTCTCGGCGACAGCGAAGCTGATGATGGTGATGGTGGT
GAATGGCAGCCGACACGCGAACTACTCGGGCTTCGAGGCGCACGCCCTGT
CGGCGGGGGTGGATTATGTGGCACAGGAGTTCGAAGAGCTCTCCTTCGAG
AATTTGAAGAAGCAGTTGGAACGGAGGTGCGATGTTGGGATGAGGGAGGC
CGCAGGGAGGGCTCTCGAGGATGTGGCACAGGGCGGGGAAGGGAGGGCGG
GGGGCGAGGAGGGAGGGAGGAGGGGTAGAGGAAAGGCTGGCAAGCCGAGC
AGCGGGCTCAGGCAGGGTCTCCCCTTGGCCCGATTGCCGTCGTTCACATG
GACGGGCGCCCTGCCTTTATCGAGGGGGGAGTCAGCCTCGCTCTCTCGAT
CCAGCAGTGAGACGATCAGGTCAGGCAGACCCGCCTGGAGCGCCGGGGAG
ACGTCTGCGATGGATTCAACCATCATGGGGCTCAGCCCTTGGGAGGACCT
CTCTGTTCCCCGCGGAGGTAGCCTCTTGCCCATGGCCCACTCCCATACGG
CGGCTGCCCACGTGGCCCTGGCTGCTGGGGCCGACGGGGGAGGGGGGGAA
GGAGGGCCCGACGGAGGGGGGGGCGGATATGGGCCGGGACAGGCGAGTGG
GGGCGGGGAGGTGGCGGCTCGGGAGCTCCGGCGGAAGGACAAGCGCGTGC
GACGTGCCTGTATGTATTGCCACGGGAAGAAACTGTCGTGTTCCTTCCAC
AGGCCTTGCGACCGTTGCTACGCCTTGAAACAGAACTGCGTGGAATACGT
GCCAAAACAGCGGACTTTAGACTCCACGGGGAACGTCTACTGCCCGCCCG
CCCCAGGTCCTGCCGCCAGGGCGAAGAGCGAGGATGGGTGGGGCGCGGAA
CAAGACGGGGTCTTCGGGAAGGAGAGGAAGGAGTCTTTACCCTCTCGGAC
CAGTAGTCCCTCCCTCTCTACCTCTGGCAGCACCTACGGGGTCGCCCCGC
CCCCGGCCTCTGCCAGCGCGGCGAAAAATGTGGGAGGCCCCCTCTTGTCC
ATGTCCTCGCATTCTTGGTCGCATGTGGGGGATAACAGCGGGGTAGGAGG
CGGGAGGAGTGGTGTCAGCGAGGCCGGGACTCGGGCGAACAGCAGCGGGA
ACCAGAGCAGCGGGTCGAAACGGAGGCGCAAGGGGGTCGAAGGGGGCCGT
TTCCAGCGGGAAGAAAGCGTCGCGGGCGGCAGGAGGGGAAAGCAGGGCCA
GGACGAAACGGGAAGTGGGACCGGCCTGGGAGCAAACGAGGCTGAGGAAG
CAAGGGGGCGCACAGACCTGGTCATCTCCCCCCCCTCCTCCGCTTCCTCC
GCCCCGTCCTGCCCGAACCCCCACCTCCTCTCCCTCTCCCCCCCCAGTGG
CCTCATTCCAGCCGCCACCATGTTCCCTGCCTGTCCACCGCGCACCGCAG
CGGCGGCGGTGGGGGCGGCGGCGGCGGGAGCGGCGGCGGCGGGAGCGGCT
GGAGGATCTTGGAAATCGGAGGCATCGGACAAGAGCCACCCTTCTTCCTC
GTCCTCCACATTCAGATCCCCTCACCAAGCTTCCACTGAGGGTCCCGGAG
ACGAAGAGCGGATTGCCACCGTTTCCTACACCCCGCCCGCTGCTTACTAC
ACTCCCTCCGCCGGCCACTCGGGGCGTCAGGCAGCGAGTGATCCCCCGCG
AGGACGAGGGCGGGGCGGAGGAAGGGATAGAGGGCGCGGGTGGCGGAGTG
TCAGTCACCCGGAGACCCAGGGTAGCATCAGCACGAGCGGAAATGGCAGC
TGTTTATACCCTCACGACCAGCAGCAGCAGCATATGGCAAACATGCAGCA
CTACCACACGGAGGGTCTAGGGCCACTGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGTACTCCCA
CCAAGACGCACAGGGACCGCAGCAACCGGTGCACCCCCCCCCCGGCACCA
ACACCACAAGTACTATGCCCCACATCCCACTGCACACAGGCCGCTTGACC
GACCGGCCGAGCACGCCTCGTACCTCCACCAATACGCCTCTCCCCCGTAC

protein sequence of rna6338

>rna6338-protein ID=rna6338-protein|Name=rna6338|organism=Nannochloropsis gaditana|type=polypeptide|length=301bp
MSGGKDEAVGASHAPATAGEEGTVAGRGRTAAVGRTSGISTRQGGREKAR
DAGPARSGREAEEAGRGKGEGGRGRGGGKGEEGRGRGGGKKGGRGDTHVG
ADAVSPFPLPAASSSSKAGSGSSGAGATAPPPSGPSTAPSEAVGRQGEGA
GGEGPAAAVVVAVGPRVELVDGQIVINQKSLEVVARPEDGGEGAMEEVTE
DPQQAATYNSFTSRTRATRWTDAETRLFYQALRQCGTDFTTMASLLFAGR
RDRAQLKNKFKKEEKQHGVLVYKYLDSTQPLPVLEAGVHDGRGEGSGEGD
D

mRNA from alignment at CM002468.1:285593..286739-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna6338 ID=rna6338|Name=rna6338|organism=Nannochloropsis gaditana|type=mRNA|length=1147bp|location=Sequence derived from alignment at CM002468.1:285593..286739- (Nannochloropsis gaditana)
ATGTCAGGGGGTAAAGACGAGGCGGTGGGCGCGTCACACGCCCCGGCAAC
TGCGGGAGAAGAAGGGACGGTGGCGGGGAGAGGGAGGACAGCGGCAGTAG
GAAGGACGTCTGGTATTAGTACCCGACAAGGAGGGCGAGAAAAGGCACGG
GACGCGGGGCCCGCAAGATCGGGTCGGGAGGCAGAAGAGGCAGGGCGGGG
GAAGGGAGAGGGAGGGAGGGGGAGAGGGGGGGGGAAGGGAGAGGAAGGGA
GGGGGAGAGGGGGGGGGAAGAAGGGGGGGCGGGGCGATACGCACGTCGGG
GCCGACGCCGTGAGTCCCTTCCCTTTGCCCGCGGCTTCCTCCTCGTCCAA
GGCGGGCTCTGGAAGCTCAGGAGCCGGCGCCACCGCCCCCCCTCCCTCAG
GACCGAGTACTGCCCCCTCGGAGGCCGTGGGCAGGCAAGGAGAAGGAGCG
GGCGGAGAGGGTCCGGCTGCTGCAGTGGTGGTGGCGGTGGGCCCTCGGGT
CGAGCTCGTGGACGGGCAGATCGTCATTAACCAGAAATCCCTGGAGGTGG
TGGCTCGGCCGGAGGACGGGGGGGAGGGCGCGATGGAGGAAGTGACCGAA
GACCCCCAGCAGGCGGCCACCTACAACAGTTTCACGAGTCGGACCCGGGC
TACGCGGTGGACGGACGCGGAGACCCGCCTTTTCTATCAGGCCTTGCGCC
AGTGCGGGACCGACTTTACCACCATGGCTTCGCTCCTTTTCGCAGGGCGG
CGGGACCGTGCGCAGCTCAAGAACAAGTTCAAGAAGGAGGAAAAGCAACA
CGGGGTCCTCGTCTACAAGTACCTGGACAGCACCCAGCCGTTGCCGGTAT
TGGAGGCAGGGGTGCATGACGGGCGAGGGGAGGGATCGGGGGAGGGGGAT
GATTGAGGAGACAAGAATGAGAAGGCGCCCGCCAACGCAGGCGGTGGGGC
CGCGGATGGTTCTTTTGGGTATGGGAATCCCAGCTTCTAAATGATGCACT
GCGCGCCATAAATACCTCTCCAAGGGCATGGCCCACTTCTTTCCTATTCG
TATAAGAAACAACTATGTGTGTACAGCATATGCAATGGACCTTTCCCTCC
CCCTTCTGCCTCCTACATCCCAAGACGCTTGTCCATACGTCTGAGCG

Coding sequence (CDS) from alignment at CM002468.1:285593..286739-

>rna6338 ID=rna6338|Name=rna6338|organism=Nannochloropsis gaditana|type=CDS|length=906bp|location=Sequence derived from alignment at CM002468.1:285593..286739- (Nannochloropsis gaditana)
ATGTCAGGGGGTAAAGACGAGGCGGTGGGCGCGTCACACGCCCCGGCAAC
TGCGGGAGAAGAAGGGACGGTGGCGGGGAGAGGGAGGACAGCGGCAGTAG
GAAGGACGTCTGGTATTAGTACCCGACAAGGAGGGCGAGAAAAGGCACGG
GACGCGGGGCCCGCAAGATCGGGTCGGGAGGCAGAAGAGGCAGGGCGGGG
GAAGGGAGAGGGAGGGAGGGGGAGAGGGGGGGGGAAGGGAGAGGAAGGGA
GGGGGAGAGGGGGGGGGAAGAAGGGGGGGCGGGGCGATACGCACGTCGGG
GCCGACGCCGTGAGTCCCTTCCCTTTGCCCGCGGCTTCCTCCTCGTCCAA
GGCGGGCTCTGGAAGCTCAGGAGCCGGCGCCACCGCCCCCCCTCCCTCAG
GACCGAGTACTGCCCCCTCGGAGGCCGTGGGCAGGCAAGGAGAAGGAGCG
GGCGGAGAGGGTCCGGCTGCTGCAGTGGTGGTGGCGGTGGGCCCTCGGGT
CGAGCTCGTGGACGGGCAGATCGTCATTAACCAGAAATCCCTGGAGGTGG
TGGCTCGGCCGGAGGACGGGGGGGAGGGCGCGATGGAGGAAGTGACCGAA
GACCCCCAGCAGGCGGCCACCTACAACAGTTTCACGAGTCGGACCCGGGC
TACGCGGTGGACGGACGCGGAGACCCGCCTTTTCTATCAGGCCTTGCGCC
AGTGCGGGACCGACTTTACCACCATGGCTTCGCTCCTTTTCGCAGGGCGG
CGGGACCGTGCGCAGCTCAAGAACAAGTTCAAGAAGGAGGAAAAGCAACA
CGGGGTCCTCGTCTACAAGTACCTGGACAGCACCCAGCCGTTGCCGGTAT
TGGAGGCAGGGGTGCATGACGGGCGAGGGGAGGGATCGGGGGAGGGGGAT
GATTGA

Synonyms

Publications